Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003297

Physical Location & Seq

Genomic Coordinates Forward (+)

5069104 .. 5070540

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGGCGTATAGAGCTGACGATGATTACGATTTCCTCTACAAGGTGGTATTAATCGGTGATTCCGGCGTCGGTAAATCCAATCTGCTTTCTCGATTCACGCGCAACGAGTTCAGCCTCGAGTCTAAATCCACCATCGGTGTCGAATTCGCCACCCGAAGCATTCATGTCGATGAAAAAATCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAGAGATACCGAGCAATCACAAGCGCATACTATCGAGGAGCTGTTGGGGCTTTGCTTGTTTATGATGTTACACGGCATGTGACATTTGAGAACGTTGAGAGATGGTTGAAGGAGCTTAGAGACCACACAGAGGCCAACATTGTGATCATGCTTGTTGGGAATAAAGCGGATCTACGTCACCTAAGAGCTGTTTCAACTGAAGATGCTAAAGCCTTTGCAGAGAGAGAGAACACATTCTTTATGGAGACATCTGCACTTGAAGCTTTGAACGTTGAGAATGCTTTCACTGAAGTGCTTTCTCAAATATACCGTGTTGCAAGCAAGAAGGCGTTGGATATTGGTGATGATCACACTACTCTTCCTAAAGGACAAAGTATTAATGTTGGGTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGATGCTGCTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

24.28

Weight (kDa)

5.61

Isoelectric Point (pI)

25.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 143	2.1e-12	ADP-ribosylation factor family
Ras	PF00071	15 - 175	5.9e-64	Ras family
Roc	PF08477	15 - 129	2.4e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 121	6.2e-07	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28550 AT2G33870 AT3G15060 AT4G18430 AT5G60860
fragaria_vesca	FvH4_3g08320 FvH4_3g19070
malus_domestica	MD03G1237100.v1.1 MD05G1307500.v1.1 MD10G1286600.v1.1 MD11G1257700.v1.1 MD11G1257800.v1.1
prunus_persica	Prupe.4G055200_v2.0.a1 Prupe.4G172300_v2.0.a1
pyrus_communis	pycom05g28420 pycom11g22750
rosa_chinensis	RchiOBHm_Chr5g0009681 RchiOBHm_Chr5g0031861
rosa_laevigata	RLG00000031679 RLG00000033354
rosa_multiflora	Rmu_sc0006311.1_g000001 Rmu_sc0011639.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048410 Rroxscaffold_1G00066530
rosa_rugosa	Rorug04G0444700 Rorug05G0128300
rosa_samantha	Rh5AG076300 Rh5AG222400 Rh5BG071500 Rh5BG222700 Rh5CG084000 Rh5CG245900 Rh5DG072000 Rh5DG227600
rosa_wichuraiana	Rw5G007030 Rw5G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AciI	CCGC	3 cut(s)	5, 207, 383
AclI	AACGTT	2 cut(s)	309, 486
AclWI	GGATC	1 cut(s)	393
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	2 cut(s)	435, 525
AcyI	GRCGYC	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	43, 346
AgsI	TTSAA	4 cut(s)	325, 411, 476, 484
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	5 cut(s)	17, 257, 331, 404, 479
AluI	AGCT	5 cut(s)	17, 257, 331, 404, 479
Alw26I	GTCTC	2 cut(s)	330, 455
AlwI	GGATC	1 cut(s)	393
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	211, 348
ApeKI	GCWGC	1 cut(s)	642
ApoI	RAATTY	1 cut(s)	146
AseI	ATTAAT	2 cut(s)	53, 594
Asp700I	GAANNNNTTC	2 cut(s)	449, 497
AspLEI	GCGC	2 cut(s)	105, 242
AsuHPI	GGTGA	3 cut(s)	71, 386, 569
AvaI	CYCGRG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	2 cut(s)	143, 312
BceAI	ACGGC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BclI	TGATCA	2 cut(s)	360, 562
BcoDI	GTCTC	2 cut(s)	330, 455
BisI	GCNGC	2 cut(s)	6, 643
BlsI	GCNGC	2 cut(s)	7, 644
BmeT110I	CYCGRG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	409, 629
BpuEI	CTTGAG	1 cut(s)	631
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 346
Bse118I	RCCGGY	1 cut(s)	209
BseGI	GGATG	2 cut(s)	616, 644
BseLI	CCNNNNNNNGG	2 cut(s)	43, 346
BseMII	CTCAG	2 cut(s)	206, 612
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	629
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	213, 350
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	66, 210
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	43, 346
BsmAI	GTCTC	2 cut(s)	330, 455
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	2 cut(s)	162, 499
BsnI	GGCC	2 cut(s)	213, 350
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	360, 385, 562
BspACI	CCGC	3 cut(s)	5, 207, 383
BspANI	GGCC	2 cut(s)	213, 350
BspCNI	CTCAG	2 cut(s)	205, 613
BspFNI	CGCG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	393
BspTNI	GGTCTC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	3 cut(s)	360, 385, 562
BssNI	GRCGYC	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	211, 535
BstDEI	CTNAG	5 cut(s)	192, 332, 398, 606, 621
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	616, 644
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	105, 242
BstKTI	GATC	3 cut(s)	363, 388, 565
BstMAI	GTCTC	2 cut(s)	330, 455
BstMBI	GATC	3 cut(s)	360, 385, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 263, 476
BstNSI	RCATGY	1 cut(s)	296
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	213, 350
BtsCI	GGATG	2 cut(s)	616, 644
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	211, 535
CfoI	GCGC	2 cut(s)	105, 242
Cfr10I	RCCGGY	1 cut(s)	209
CseI	GACGC	1 cut(s)	58
CviAII	CATG	3 cut(s)	167, 293, 364
DdeI	CTNAG	5 cut(s)	192, 332, 398, 606, 621
DpnI	GATC	3 cut(s)	362, 387, 564
DpnII	GATC	3 cut(s)	360, 385, 562
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	435, 525
Eco88I	CYCGRG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	146
FaeI	CATG	3 cut(s)	170, 296, 367
FaiI	YATR	8 cut(s)	12, 168, 244, 279, 294, 365, 458, 523
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	166, 292, 363
FbaI	TGATCA	2 cut(s)	360, 562
Fnu4HI	GCNGC	2 cut(s)	6, 643
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	2 cut(s)	6, 643
GlaI	GCGC	2 cut(s)	104, 241
GluI	GCNGC	2 cut(s)	6, 643
HaeIII	GGCC	2 cut(s)	213, 350
HapII	CCGG	2 cut(s)	66, 210
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	105, 242
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	170, 296, 367
Hin6I	GCGC	2 cut(s)	103, 240
HinP1I	GCGC	2 cut(s)	103, 240
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	3 cut(s)	62, 96, 122
HpaII	CCGG	2 cut(s)	66, 210
HphI	GGTGA	3 cut(s)	71, 386, 569
Hpy188I	TCNGA	2 cut(s)	195, 622
Hpy188III	TCNNGA	1 cut(s)	93
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	319, 535, 625
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	3 cut(s)	309, 391, 486
HpyCH4V	TGCA	3 cut(s)	434, 470, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 263, 476
HpyF3I	CTNAG	5 cut(s)	192, 332, 398, 606, 621
HpySE526I	ACGT	3 cut(s)	309, 391, 486
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	170, 296, 367
HspAI	GCGC	2 cut(s)	103, 240
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	360, 562
Kzo9I	GATC	3 cut(s)	360, 385, 562
LmnI	GCTCC	2 cut(s)	254, 328
LpnPI	CCDG	2 cut(s)	79, 223
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	2 cut(s)	409, 629
MaeII	ACGT	3 cut(s)	309, 391, 486
MaeIII	GTNAC	3 cut(s)	283, 295, 392
MalI	GATC	3 cut(s)	362, 387, 564
MboI	GATC	3 cut(s)	360, 385, 562
MboII	GAAGA	2 cut(s)	428, 566
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	528, 616
MnlI	CCTC	5 cut(s)	47, 128, 245, 340, 616
MroNI	GCCGGC	1 cut(s)	209
MroXI	GAANNNNTTC	2 cut(s)	449, 497
MseI	TTAA	3 cut(s)	53, 594, 627
MslI	CAYNNNNRTG	2 cut(s)	171, 506
MspI	CCGG	2 cut(s)	66, 210
Mva1269I	GAATGC	2 cut(s)	162, 499
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	14, 263, 476
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	3 cut(s)	360, 385, 562
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	170, 296, 367
NmuCI	GTSAC	2 cut(s)	295, 392
NspI	RCATGY	1 cut(s)	296
OliI	CACNNNNGTG	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	2 cut(s)	162, 499
PdiI	GCCGGC	1 cut(s)	211
PdmI	GAANNNNTTC	2 cut(s)	449, 497
PfeI	GAWTC	2 cut(s)	62, 96
PkrI	GCNGC	2 cut(s)	7, 644
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PshBI	ATTAAT	2 cut(s)	53, 594
Psp1406I	AACGTT	2 cut(s)	309, 486
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	385
RseI	CAYNNNNRTG	2 cut(s)	171, 506
SaqAI	TTAA	3 cut(s)	53, 594, 627
SatI	GCNGC	2 cut(s)	6, 643
Sau3AI	GATC	3 cut(s)	360, 385, 562
SchI	GAGTC	1 cut(s)	131
SfaNI	GCATC	2 cut(s)	409, 629
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	171, 506
SmlI	CTYRAG	2 cut(s)	119, 646
SmoI	CTYRAG	2 cut(s)	119, 646
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	3 cut(s)	5, 207, 383
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	3 cut(s)	312, 394, 489
TaqI	TCGA	5 cut(s)	94, 120, 144, 171, 250
TasI	AATT	1 cut(s)	146
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	62, 96
Tru1I	TTAA	3 cut(s)	53, 594, 627
Tru9I	TTAA	3 cut(s)	53, 594, 627
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	2 cut(s)	295, 392
TseI	GCWGC	1 cut(s)	642
Tsp45I	GTSAC	2 cut(s)	295, 392
TspDTI	ATGAA	2 cut(s)	155, 189
TspRI	CASTG	1 cut(s)	508
VspI	ATTAAT	2 cut(s)	53, 594
XagI	CCTNNNNNAGG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	2 cut(s)	449, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.