Rorug05G0128300

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003297
Physical Location & Seq
Reverse (-)
11430508 .. 11431118
611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0128300.1

Sequence Viewer

Length: 492 bp
ATGCTCATTCACCCTAGGGGTGAAGAATTGTTCTTCAGGAAATATGGTCTAGCAGCTGACAATGTTGTCGATGCTAGGATAGTTGATGTTAATGGAAAAGTTCTGGACAGGAAATCCATGGGAGAAGATTTGTTTTGGAGGCTCAAGCTTTGGAGTCATTCTTGCATGGAAACTTACACTGGTTCTAGTTCCCCCATCTGTGTTGCAGATAAAGCTGGCACCACTGGCGGCAAAACTATCTCATTTTCTTTTGATGCATTGTTCCTTGGACCAGTTGAGAAACTTCTTCCTTTGATGCAAGACAATTTCCCAGACTTAAGTTTAAACTGCAGTGATTGCACTGAAATGAGCTGGATCAAATCTGTTATGCACTATGCTGGCTTCTCAAGAAGTGAACCTCTGGAAGTTTTGCTTAACCGGGCTCAATCGTCTAGGTACTTCTCAGTGGCGGAACCAGGATTTGATCTTAGGGGGGGTCCAGACATAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

163

Amino Acids

18.17

Weight (kDa)

5.35

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 218
AciI CCGC 2 cut(s) 228, 449
AclWI GGATC 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 19
AfaI GTAC 1 cut(s) 437
AflII CTTAAG 1 cut(s) 316
AjnI CCWGG 1 cut(s) 454
AluBI AGCT 4 cut(s) 56, 148, 215, 351
AluI AGCT 4 cut(s) 56, 148, 215, 351
AlwI GGATC 1 cut(s) 362
ApeKI GCWGC 1 cut(s) 53
AspA2I CCTAGG 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 269, 476
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 2 cut(s) 269, 476
AvrII CCTAGG 1 cut(s) 14
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 456
BcnI CCSGG 1 cut(s) 419
BfaI CTAG 5 cut(s) 15, 50, 75, 186, 432
BfmI CTRYAG 1 cut(s) 328
BfrI CTTAAG 1 cut(s) 316
BisI GCNGC 2 cut(s) 54, 229
BlnI CCTAGG 1 cut(s) 14
BlsI GCNGC 2 cut(s) 55, 230
Bme1390I CCNGG 2 cut(s) 419, 456
Bme18I GGWCC 2 cut(s) 269, 476
BmgT120I GGNCC 2 cut(s) 269, 476
BmiI GGNNCC 3 cut(s) 220, 453, 477
BmrFI CCNGG 2 cut(s) 419, 456
BmsI GCATC 3 cut(s) 61, 244, 285
BpuEI CTTGAG 2 cut(s) 128, 370
BpuMI CCSGG 1 cut(s) 419
BsaJI CCNNGG 3 cut(s) 14, 117, 265
Bse1I ACTGG 3 cut(s) 184, 229, 272
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 3 cut(s) 14, 117, 265
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 3 cut(s) 184, 229, 272
BseXI GCAGC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 2 cut(s) 354, 463
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 228, 449
BspCNI CTCAG 1 cut(s) 455
BspLI GGNNCC 3 cut(s) 220, 453, 477
BspMAI CTGCAG 1 cut(s) 332
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 218
BspTI CTTAAG 1 cut(s) 316
BsrI ACTGG 3 cut(s) 184, 229, 272
BssECI CCNNGG 3 cut(s) 14, 117, 265
BssMI GATC 2 cut(s) 354, 463
BssT1I CCWWGG 3 cut(s) 14, 117, 265
Bst2UI CCWGG 1 cut(s) 456
BstAFI CTTAAG 1 cut(s) 316
BstAPI GCANNNNNTGC 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 217, 379
BstDEI CTNAG 2 cut(s) 442, 467
BstDSI CCRYGG 1 cut(s) 117
BstKTI GATC 2 cut(s) 357, 466
BstMBI GATC 2 cut(s) 354, 463
BstMWI GCNNNNNNNGC 3 cut(s) 212, 225, 336
BstNI CCWGG 1 cut(s) 456
BstSCI CCNGG 2 cut(s) 417, 454
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 5 cut(s) 177, 222, 337, 339, 450
Cac8I GCNNGC 2 cut(s) 217, 379
Cfr13I GGNCC 2 cut(s) 269, 476
Csp6I GTAC 1 cut(s) 436
CviAII CATG 2 cut(s) 118, 166
CviJI RGCY 7 cut(s) 56, 142, 148, 215, 351, 381, 422
CviKI_1 RGCY 7 cut(s) 56, 142, 148, 215, 351, 381, 422
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 2 cut(s) 442, 467
DpnI GATC 2 cut(s) 356, 465
DpnII GATC 2 cut(s) 354, 463
DraI TTTAAA 1 cut(s) 324
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 464
Eco130I CCWWGG 3 cut(s) 14, 117, 265
Eco24I GRGCYC 1 cut(s) 424
Eco47I GGWCC 2 cut(s) 269, 476
Eco57I CTGAAG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 454
EcoT14I CCWWGG 3 cut(s) 14, 117, 265
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 3 cut(s) 14, 117, 265
FaeI CATG 2 cut(s) 121, 169
FaiI YATR 6 cut(s) 45, 119, 167, 368, 375, 485
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 2 cut(s) 117, 165
Fnu4HI GCNGC 2 cut(s) 54, 229
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 2 cut(s) 54, 229
FspBI CTAG 5 cut(s) 15, 50, 75, 186, 432
GluI GCNGC 2 cut(s) 54, 229
HapII CCGG 1 cut(s) 418
Hin1II CATG 2 cut(s) 121, 169
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 1 cut(s) 154
HpaII CCGG 1 cut(s) 418
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 395
Hpy188III TCNNGA 5 cut(s) 37, 104, 387, 401, 479
Hpy8I GTNNAC 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 7 cut(s) 165, 206, 257, 298, 330, 339, 370
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 225, 336
HpyF3I CTNAG 2 cut(s) 442, 467
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 2 cut(s) 121, 169
Kzo9I GATC 2 cut(s) 354, 463
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 3 cut(s) 61, 244, 285
MaeI CTAG 5 cut(s) 15, 50, 75, 186, 432
MaeII ACGT 1 cut(s) 488
MalI GATC 2 cut(s) 356, 465
MboI GATC 2 cut(s) 354, 463
MboII GAAGA 4 cut(s) 25, 35, 137, 278
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 2 cut(s) 26, 304
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 2 cut(s) 132, 408
Mph1103I ATGCAT 1 cut(s) 259
MseI TTAA 4 cut(s) 90, 317, 323, 414
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 316
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 2 cut(s) 419, 456
MssI GTTTAAAC 1 cut(s) 324
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 3 cut(s) 212, 225, 336
NciI CCSGG 1 cut(s) 419
NcoI CCATGG 1 cut(s) 117
NdeII GATC 2 cut(s) 354, 463
NlaIII CATG 2 cut(s) 121, 169
NlaIV GGNNCC 3 cut(s) 220, 453, 477
NsiI ATGCAT 1 cut(s) 259
PkrI GCNGC 2 cut(s) 55, 230
PleI GAGTC 1 cut(s) 162
PmeI GTTTAAAC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 454
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 3 cut(s) 220, 453, 477
PspPI GGNCC 2 cut(s) 269, 476
PstI CTGCAG 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 4 cut(s) 90, 317, 323, 414
SatI GCNGC 2 cut(s) 54, 229
Sau3AI GATC 2 cut(s) 354, 463
Sau96I GGNCC 2 cut(s) 269, 476
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 419, 456
SduI GDGCHC 1 cut(s) 424
SetI ASST 7 cut(s) 58, 150, 217, 353, 400, 437, 491
SfaNI GCATC 3 cut(s) 61, 244, 285
SfcI CTRYAG 1 cut(s) 328
SinI GGWCC 2 cut(s) 269, 476
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 3 cut(s) 143, 316, 385
SmoI CTYRAG 3 cut(s) 143, 316, 385
Sse9I AATT 2 cut(s) 26, 304
SsiI CCGC 2 cut(s) 228, 449
SspMI CTAG 5 cut(s) 15, 50, 75, 186, 432
StyD4I CCNGG 2 cut(s) 417, 454
StyI CCWWGG 3 cut(s) 14, 117, 265
TaiI ACGT 1 cut(s) 491
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 26, 304
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 4 cut(s) 90, 317, 323, 414
Tru9I TTAA 4 cut(s) 90, 317, 323, 414
TscAI CASTG 5 cut(s) 184, 229, 337, 346, 450
TseI GCWGC 1 cut(s) 53
TspRI CASTG 5 cut(s) 184, 229, 337, 346, 450
Vha464I CTTAAG 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 269, 476
XmaJI CCTAGG 1 cut(s) 14
XspI CTAG 5 cut(s) 15, 50, 75, 186, 432
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.