Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003297

Physical Location & Seq

Genomic Coordinates Forward (+)

24484498 .. 24485705

Gene Structure 1208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCGCATATAGAGCCGACGACGAGTACGATTACCTCTTCAAAGTTGTGTTAATTGGAGACTCCGGCGTTGGAAAATCCAACCTCCTTTCTCGATTCACGCGCAACGAGTTCAGTCTCGAATCTAAATCCACGATCGGTGTAGAATTCGCCACTCGTAGCATCCATGTCGATGATAAGATCGTCAAAGCTCAGATTTGGGATACCGCTGGCCAAGAAAGATATCGAGCAATCACAAGTGCATATTACAGAGGAGCTGTAGGAGCGTTGCTTGTGTACGATGTCACAAGACATGTGACGTTTGAGAACGTTGAAAGATGGTTAAAGGAGCTTCGAGATCATACAGATGCCAATATCGTCATCATGTTCGTTGGGAACAAAGCGGATCTCCGTCACCTACGAGCTGTTTCGACTGAAGACGCTAAGGCTTTCGCTGAGAGAGAGAACACTTTCTTCATGGAGACATCAGCTCTCGAATCGATGAACGTCGAGAATGCTTTCACTGAAGTACTTTCTCAGATTTACCGTGTGGTTAGCCGGAAAGCGTTGGATATAGGAGACGACCCGGCTGCTCTTCCCAAAGGACAGACCATCAATGTCGGATCGAAAGACGATGTCTCTGCGGTGAAAAAGGTTGGTTGCTGCTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

24.28

Weight (kDa)

5.65

Isoelectric Point (pI)

23.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 168	4.1e-12	ADP-ribosylation factor family
Ras	PF00071	15 - 175	1.3e-63	Ras family
Roc	PF08477	15 - 129	6.9e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 121	1.1e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28550 AT2G33870 AT3G15060 AT4G18430 AT5G60860
fragaria_vesca	FvH4_3g08320 FvH4_3g19070
malus_domestica	MD03G1237100.v1.1 MD05G1307500.v1.1 MD10G1286600.v1.1 MD11G1257700.v1.1 MD11G1257800.v1.1
prunus_persica	Prupe.4G055200_v2.0.a1 Prupe.4G172300_v2.0.a1
pyrus_communis	pycom05g28420 pycom11g22750
rosa_chinensis	RchiOBHm_Chr5g0009681 RchiOBHm_Chr5g0031861
rosa_laevigata	RLG00000031679 RLG00000033354
rosa_multiflora	Rmu_sc0006311.1_g000001 Rmu_sc0011639.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048410 Rroxscaffold_1G00066530
rosa_rugosa	Rorug04G0444700 Rorug05G0128300
rosa_samantha	Rh5AG076300 Rh5AG222400 Rh5BG071500 Rh5BG222700 Rh5CG084000 Rh5CG245900 Rh5DG072000 Rh5DG227600
rosa_wichuraiana	Rw5G007030 Rw5G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AciI	CCGC	4 cut(s)	6, 207, 383, 623
AclI	AACGTT	1 cut(s)	309
AclWI	GGATC	2 cut(s)	393, 610
AcoI	YGGCCR	2 cut(s)	3, 211
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	2 cut(s)	435, 525
AfaI	GTAC	3 cut(s)	29, 278, 510
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	43, 314
AluBI	AGCT	5 cut(s)	191, 257, 331, 404, 470
AluI	AGCT	5 cut(s)	191, 257, 331, 404, 470
Alw26I	GTCTC	5 cut(s)	54, 122, 455, 552, 622
AlwI	GGATC	2 cut(s)	393, 610
AoxI	GGCC	2 cut(s)	3, 211
ApeKI	GCWGC	2 cut(s)	569, 642
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	2 cut(s)	449, 497
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	2 cut(s)	386, 637
BalI	TGGCCA	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	556, 629
BccI	CCATC	2 cut(s)	312, 599
BcgI	CGANNNNNNTGC	6 cut(s)	151, 185, 551, 585, 602, 636
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	566
BcoDI	GTCTC	5 cut(s)	54, 122, 455, 552, 622
BfmI	CTRYAG	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	6, 570, 643
BlsI	GCNGC	3 cut(s)	7, 571, 644
BmcAI	AGTACT	1 cut(s)	510
Bme1390I	CCNGG	1 cut(s)	566
BmrFI	CCNGG	1 cut(s)	566
BmsI	GCATC	2 cut(s)	171, 337
BpiI	GAAGAC	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	566
Bsa29I	ATCGAT	1 cut(s)	479
BseCI	ATCGAT	1 cut(s)	479
BseGI	GGATG	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	206, 426, 530
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	556, 629
Bsh1236I	CGCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	5, 213
BshVI	ATCGAT	1 cut(s)	479
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	66, 538, 566
BsmAI	GTCTC	5 cut(s)	54, 122, 455, 552, 622
BsmBI	CGTCTC	1 cut(s)	552
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	5, 213
Bsp143I	GATC	5 cut(s)	135, 180, 337, 385, 602
BspACI	CCGC	4 cut(s)	6, 207, 383, 623
BspANI	GGCC	2 cut(s)	5, 213
BspCNI	CTCAG	3 cut(s)	205, 427, 529
BspDI	ATCGAT	1 cut(s)	479
BspFNI	CGCG	1 cut(s)	103
BspPI	GGATC	2 cut(s)	393, 610
BspQI	GCTCTTC	1 cut(s)	579
BssMI	GATC	5 cut(s)	135, 180, 337, 385, 602
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	2 cut(s)	44, 579
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	4 cut(s)	192, 423, 435, 516
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	5 cut(s)	138, 183, 340, 388, 605
BstMAI	GTCTC	5 cut(s)	54, 122, 455, 552, 622
BstMBI	GATC	5 cut(s)	135, 180, 337, 385, 602
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 263
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	564
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	556, 629
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	479
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	5, 213
BsuTUI	ATCGAT	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	105
ClaI	ATCGAT	1 cut(s)	479
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	3 cut(s)	28, 277, 509
CviAII	CATG	4 cut(s)	167, 293, 364, 457
CviQI	GTAC	3 cut(s)	28, 277, 509
DdeI	CTNAG	4 cut(s)	192, 423, 435, 516
DpnI	GATC	5 cut(s)	137, 182, 339, 387, 604
DpnII	GATC	5 cut(s)	135, 180, 337, 385, 602
EaeI	YGGCCR	2 cut(s)	3, 211
Eam1104I	CTCTTC	2 cut(s)	44, 579
EarI	CTCTTC	2 cut(s)	44, 579
Eco32I	GATATC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	435, 525
EcoRI	GAATTC	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	4 cut(s)	170, 296, 367, 460
FaiI	YATR	9 cut(s)	10, 12, 168, 244, 294, 342, 365, 458, 554
FatI	CATG	4 cut(s)	166, 292, 363, 456
Fnu4HI	GCNGC	3 cut(s)	6, 570, 643
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	6, 570, 643
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	3 cut(s)	6, 570, 643
HaeIII	GGCC	2 cut(s)	5, 213
HapII	CCGG	3 cut(s)	66, 538, 566
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	170, 296, 367, 460
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	4 cut(s)	62, 96, 122, 476
HpaII	CCGG	3 cut(s)	66, 538, 566
HphI	GGTGA	2 cut(s)	386, 637
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	3 cut(s)	195, 519, 602
Hpy188III	TCNNGA	5 cut(s)	93, 119, 335, 473, 490
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	3 cut(s)	23, 26, 491
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	3 cut(s)	299, 309, 486
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 263
HpyF3I	CTNAG	4 cut(s)	192, 423, 435, 516
HpySE526I	ACGT	3 cut(s)	299, 309, 486
Hsp92II	CATG	4 cut(s)	170, 296, 367, 460
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	135, 180, 337, 385, 602
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	3 cut(s)	254, 263, 328
LpnPI	CCDG	4 cut(s)	79, 195, 551, 579
Lsp1109I	GCAGC	2 cut(s)	556, 629
LweI	GCATC	2 cut(s)	171, 337
MaeII	ACGT	3 cut(s)	299, 309, 486
MaeIII	GTNAC	3 cut(s)	283, 295, 392
MalI	GATC	5 cut(s)	137, 182, 339, 387, 604
MboI	GATC	5 cut(s)	135, 180, 337, 385, 602
MboII	GAAGA	4 cut(s)	31, 428, 445, 566
MflI	RGATCY	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	3 cut(s)	54, 146, 649
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	4 cut(s)	52, 105, 528, 580
MnlI	CCTC	3 cut(s)	47, 95, 245
Mox20I	TGGCCA	1 cut(s)	213
MroXI	GAANNNNTTC	2 cut(s)	449, 497
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	2 cut(s)	53, 323
MslI	CAYNNNNRTG	2 cut(s)	171, 345
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	3 cut(s)	66, 538, 566
MspR9I	CCNGG	1 cut(s)	566
Mva1269I	GAATGC	1 cut(s)	499
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	14, 263
NciI	CCSGG	1 cut(s)	566
NdeII	GATC	5 cut(s)	135, 180, 337, 385, 602
NlaIII	CATG	4 cut(s)	170, 296, 367, 460
NmuCI	GTSAC	3 cut(s)	283, 295, 392
NspI	RCATGY	1 cut(s)	296
PciI	ACATGT	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	499
PdmI	GAANNNNTTC	2 cut(s)	449, 497
PfeI	GAWTC	3 cut(s)	96, 122, 476
PflFI	GACNNNGTC	1 cut(s)	614
PkrI	GCNGC	3 cut(s)	7, 571, 644
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PscI	ACATGT	1 cut(s)	292
Psp1406I	AACGTT	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	385
PsyI	GACNNNGTC	1 cut(s)	614
PvuI	CGATCG	1 cut(s)	138
RsaI	GTAC	3 cut(s)	29, 278, 510
RsaNI	GTAC	3 cut(s)	28, 277, 509
RseI	CAYNNNNRTG	2 cut(s)	171, 345
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	53, 323
SatI	GCNGC	3 cut(s)	6, 570, 643
Sau3AI	GATC	5 cut(s)	135, 180, 337, 385, 602
ScaI	AGTACT	1 cut(s)	510
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	566
SfaNI	GCATC	2 cut(s)	171, 337
SfcI	CTRYAG	1 cut(s)	258
SmiMI	CAYNNNNRTG	2 cut(s)	171, 345
Sse9I	AATT	3 cut(s)	54, 146, 649
SsiI	CCGC	4 cut(s)	6, 207, 383, 623
StyD4I	CCNGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	3 cut(s)	302, 312, 489
TasI	AATT	3 cut(s)	54, 146, 649
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	96, 122, 476
Tru1I	TTAA	2 cut(s)	53, 323
Tru9I	TTAA	2 cut(s)	53, 323
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	3 cut(s)	283, 295, 392
TseI	GCWGC	2 cut(s)	569, 642
Tsp45I	GTSAC	3 cut(s)	283, 295, 392
TspDTI	ATGAA	2 cut(s)	445, 497
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	508
Tth111I	GACNNNGTC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	296
XmnI	GAANNNNTTC	2 cut(s)	449, 497
ZrmI	AGTACT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.