Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003297

Physical Location & Seq

Genomic Coordinates Reverse (-)

37014516 .. 37016039

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1257800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGTACAGGGCGGATGACGACTATGATTATCTGTTCAAGGTGGTGTTGATTGGCGACTCCGGCGTCGGAAAATCCAACCTTTTGTCGAGATTCACGCGCAACGAGTTCAGCCTCGAGTCGAAGTCGACGATCGGCGTCGAGTTCGCCACTCGGAGTATCCACGTTGATGAGAAGATCGTCAAGGCCCAGATTTGGGATACCGCTGGCCAAGAAAGGTACCGTGCAATTACAAGTGCATACTACCGAGGAGCTGTTGGCGCTTTGCTTGTCTATGATGTCACCCGGCATGTGACATTTGAGAATGTTGAGAGATGGTTGAAGGAGCTACGGGATCACACAGACTCCAACATTGTGATAATGCTCGTGGGTAACAAAGCTGACCTGCGTCACCTGCGTGCTGTTTCTGTTGAGGATGCTAAGGCTTTTGCTGAGAGAGAAAACACCTTCTTTATGGAGACATCAGCACTCGAGTCTATGAACGTTGAAAATGCTTTCACTGAAGTCCTAACACAGATATACCATGTAGTCTGCCGGAAAGCACTAGAGGTCGGAGATGATCCTGCAGCATTGCCCAAGGGACAGACCATAAATGTCGGAAACAAGGATGACGTTTCTGCTGTTAAGAAAGATAGTTGCTGTTTCTGCCTAATCGTGAGAGCGATAGGTCAAGCTGAAGGGCGTCGTCTTCTCATTTTGCTGCCCCTGGAGTTTCAAGATTTGTACCTGTCAACACAAGGAATTTGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

251

Amino Acids

28.13

Weight (kDa)

5.47

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 167	3.9e-12	ADP-ribosylation factor family
Ras	PF00071	14 - 174	6.1e-64	Ras family
Roc	PF08477	14 - 128	3e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	14 - 120	1.2e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28550 AT2G33870 AT3G15060 AT4G18430 AT5G60860
fragaria_vesca	FvH4_3g08320 FvH4_3g19070
malus_domestica	MD03G1237100.v1.1 MD05G1307500.v1.1 MD10G1286600.v1.1 MD11G1257700.v1.1 MD11G1257800.v1.1
prunus_persica	Prupe.4G055200_v2.0.a1 Prupe.4G172300_v2.0.a1
pyrus_communis	pycom05g28420 pycom11g22750
rosa_chinensis	RchiOBHm_Chr5g0009681 RchiOBHm_Chr5g0031861
rosa_laevigata	RLG00000031679 RLG00000033354
rosa_multiflora	Rmu_sc0006311.1_g000001 Rmu_sc0011639.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048410 Rroxscaffold_1G00066530
rosa_rugosa	Rorug04G0444700 Rorug05G0128300
rosa_samantha	Rh5AG076300 Rh5AG222400 Rh5BG071500 Rh5BG222700 Rh5CG084000 Rh5CG245900 Rh5DG072000 Rh5DG227600
rosa_wichuraiana	Rw5G007030 Rw5G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	402
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	2 cut(s)	393, 402
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	128
AccII	CGCG	1 cut(s)	100
AciI	CCGC	2 cut(s)	14, 204
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	2 cut(s)	342, 554
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	741
AcuI	CTGAAG	2 cut(s)	522, 696
AcyI	GRCGYC	3 cut(s)	66, 138, 682
AfaI	GTAC	3 cut(s)	8, 221, 725
AfiI	CCNNNNNNNGG	2 cut(s)	195, 196
AgsI	TTSAA	4 cut(s)	40, 322, 488, 716
AjnI	CCWGG	1 cut(s)	705
AleI	CACNNNNGTG	1 cut(s)	396
AluBI	AGCT	4 cut(s)	254, 328, 380, 674
AluI	AGCT	4 cut(s)	254, 328, 380, 674
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	342, 554
Ama87I	CYCGRG	2 cut(s)	116, 470
AoxI	GGCC	2 cut(s)	186, 208
ApeKI	GCWGC	2 cut(s)	566, 700
ApoI	RAATTY	1 cut(s)	741
Asp718I	GGTACC	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	102, 263
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	274, 383
AvaI	CYCGRG	2 cut(s)	116, 470
BalI	TGGCCA	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	680
BbvI	GCAGC	2 cut(s)	578, 687
BccI	CCATC	1 cut(s)	309
BciT130I	CCWGG	1 cut(s)	707
BciVI	GTATCC	2 cut(s)	170, 193
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	264
BfuAI	ACCTGC	2 cut(s)	393, 402
BfuI	GTATCC	2 cut(s)	170, 193
BisI	GCNGC	2 cut(s)	567, 701
BlsI	GCNGC	2 cut(s)	568, 702
Bme1390I	CCNGG	2 cut(s)	286, 707
BmeT110I	CYCGRG	2 cut(s)	116, 470
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	286, 707
BmsI	GCATC	1 cut(s)	406
BoxI	GACNNNNGTC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	1 cut(s)	728
Bpu10I	CCTNAGC	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	286
BsaHI	GRCGYC	3 cut(s)	66, 138, 682
BsaJI	CCNNGG	3 cut(s)	247, 576, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 196
Bse3DI	GCAATG	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	707
BseDI	CCNNGG	3 cut(s)	247, 576, 705
BseGI	GGATG	3 cut(s)	22, 421, 613
BseLI	CCNNNNNNNGG	2 cut(s)	195, 196
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	578, 687
Bsh1236I	CGCG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	188, 210
BshNI	GGYRCC	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	135
BsiHKCI	CYCGRG	2 cut(s)	116, 470
BsiSI	CCGG	3 cut(s)	63, 286, 535
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	2 cut(s)	195, 196
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	2 cut(s)	188, 210
BsoBI	CYCGRG	2 cut(s)	116, 470
Bsp143I	GATC	4 cut(s)	132, 177, 334, 559
BspACI	CCGC	2 cut(s)	14, 204
BspANI	GGCC	2 cut(s)	188, 210
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	2 cut(s)	393, 402
BspPI	GGATC	2 cut(s)	342, 554
BspT107I	GGYRCC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	569
BssECI	CCNNGG	3 cut(s)	247, 576, 705
BssMI	GATC	4 cut(s)	132, 177, 334, 559
BssNI	GRCGYC	3 cut(s)	66, 138, 682
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	707
Bst4CI	ACNGT	1 cut(s)	224
BstACI	GRCGYC	3 cut(s)	66, 138, 682
BstC8I	GCNNGC	2 cut(s)	208, 399
BstDEI	CTNAG	2 cut(s)	420, 432
BstF5I	GGATG	3 cut(s)	22, 421, 613
BstFNI	CGCG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	102, 263
BstKTI	GATC	4 cut(s)	135, 180, 337, 562
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	4 cut(s)	132, 177, 334, 559
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 63, 260, 394, 645
BstNI	CCWGG	1 cut(s)	707
BstNSI	RCATGY	1 cut(s)	293
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	284, 705
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	578, 687
BstV2I	GAAGAC	1 cut(s)	680
BsuI	GTATCC	2 cut(s)	170, 193
BsuRI	GGCC	2 cut(s)	188, 210
BtsCI	GGATG	3 cut(s)	22, 421, 613
BtsIMutI	CAGTG	1 cut(s)	498
BveI	ACCTGC	2 cut(s)	393, 402
Cac8I	GCNNGC	2 cut(s)	208, 399
CfoI	GCGC	2 cut(s)	102, 263
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	4 cut(s)	55, 127, 377, 671
Csp6I	GTAC	3 cut(s)	7, 220, 724
CviAII	CATG	2 cut(s)	290, 524
CviJI	RGCY	8 cut(s)	114, 188, 210, 254, 328, 380, 425, 674
CviKI_1	RGCY	8 cut(s)	114, 188, 210, 254, 328, 380, 425, 674
CviQI	GTAC	3 cut(s)	7, 220, 724
DdeI	CTNAG	2 cut(s)	420, 432
DpnI	GATC	4 cut(s)	134, 179, 336, 561
DpnII	GATC	4 cut(s)	132, 177, 334, 559
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	576
Eco57I	CTGAAG	2 cut(s)	522, 696
Eco88I	CYCGRG	2 cut(s)	116, 470
EcoRII	CCWGG	1 cut(s)	705
EcoT14I	CCWWGG	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	2 cut(s)	293, 527
FaiI	YATR	9 cut(s)	27, 241, 276, 291, 455, 479, 520, 525, 590
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	2 cut(s)	289, 523
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	567, 701
FokI	GGATG	3 cut(s)	29, 428, 620
Fsp4HI	GCNGC	2 cut(s)	567, 701
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	2 cut(s)	101, 262
GluI	GCNGC	2 cut(s)	567, 701
GsuI	CTGGAG	1 cut(s)	728
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	188, 210
HapII	CCGG	3 cut(s)	63, 286, 535
HgaI	GACGC	4 cut(s)	55, 127, 377, 671
HhaI	GCGC	2 cut(s)	102, 263
Hin1I	GRCGYC	3 cut(s)	66, 138, 682
Hin1II	CATG	2 cut(s)	293, 527
Hin6I	GCGC	2 cut(s)	100, 261
HinP1I	GCGC	2 cut(s)	100, 261
HincII	GTYRAC	2 cut(s)	129, 732
HindII	GTYRAC	2 cut(s)	129, 732
HinfI	GANTC	5 cut(s)	59, 93, 119, 344, 473
HpaII	CCGG	3 cut(s)	63, 286, 535
HphI	GGTGA	2 cut(s)	274, 383
Hpy166II	GTNNAC	2 cut(s)	129, 732
Hpy188I	TCNGA	4 cut(s)	71, 156, 554, 599
Hpy188III	TCNNGA	3 cut(s)	90, 655, 716
Hpy8I	GTNNAC	2 cut(s)	129, 732
Hpy99I	CGWCG	4 cut(s)	71, 133, 143, 687
HpyAV	CCTTC	3 cut(s)	316, 457, 671
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	3 cut(s)	165, 483, 612
HpyCH4V	TGCA	3 cut(s)	227, 239, 566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 63, 260, 394, 645
HpyF3I	CTNAG	2 cut(s)	420, 432
HpySE526I	ACGT	3 cut(s)	165, 483, 612
Hsp92I	GRCGYC	3 cut(s)	66, 138, 682
Hsp92II	CATG	2 cut(s)	293, 527
HspAI	GCGC	2 cut(s)	100, 261
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	132, 177, 334, 559
LmnI	GCTCC	2 cut(s)	251, 325
Lsp1109I	GCAGC	2 cut(s)	578, 687
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	3 cut(s)	165, 483, 612
MaeIII	GTNAC	4 cut(s)	280, 292, 371, 389
MalI	GATC	4 cut(s)	134, 179, 336, 561
MboI	GATC	4 cut(s)	132, 177, 334, 559
MboII	GAAGA	2 cut(s)	187, 680
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	2 cut(s)	228, 741
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	4 cut(s)	53, 128, 338, 482
MmeI	TCCRAC	5 cut(s)	49, 102, 372, 532, 577
MnlI	CCTC	4 cut(s)	125, 242, 406, 541
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	2 cut(s)	624, 751
MslI	CAYNNNNRTG	2 cut(s)	168, 396
Msp20I	TGGCCA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	3 cut(s)	63, 286, 535
MspR9I	CCNGG	2 cut(s)	286, 707
MvaI	CCWGG	1 cut(s)	707
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	5 cut(s)	11, 63, 260, 394, 645
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	4 cut(s)	132, 177, 334, 559
NlaIII	CATG	2 cut(s)	293, 527
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	3 cut(s)	280, 292, 389
NspI	RCATGY	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	396
PaeR7I	CTCGAG	2 cut(s)	116, 470
PaqCI	CACCTGC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	568, 702
Ple19I	CGATCG	1 cut(s)	135
PleI	GAGTC	4 cut(s)	53, 127, 338, 481
PpsI	GAGTC	4 cut(s)	53, 127, 338, 481
PshAI	GACNNNNGTC	1 cut(s)	387
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	705
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	187
PspXI	VCTCGAGB	2 cut(s)	116, 470
PstI	CTGCAG	1 cut(s)	568
PvuI	CGATCG	1 cut(s)	135
RsaI	GTAC	3 cut(s)	8, 221, 725
RsaNI	GTAC	3 cut(s)	7, 220, 724
RseI	CAYNNNNRTG	2 cut(s)	168, 396
SalI	GTCGAC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	624, 751
SatI	GCNGC	2 cut(s)	567, 701
Sau3AI	GATC	4 cut(s)	132, 177, 334, 559
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	4 cut(s)	53, 128, 338, 482
ScrFI	CCNGG	2 cut(s)	286, 707
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	564
Sfr274I	CTCGAG	2 cut(s)	116, 470
SlaI	CTCGAG	2 cut(s)	116, 470
SmiMI	CAYNNNNRTG	2 cut(s)	168, 396
SmlI	CTYRAG	2 cut(s)	116, 470
SmoI	CTYRAG	2 cut(s)	116, 470
Sse9I	AATT	2 cut(s)	228, 741
SsiI	CCGC	2 cut(s)	14, 204
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	2 cut(s)	284, 705
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	3 cut(s)	168, 486, 615
TaqI	TCGA	6 cut(s)	89, 117, 122, 128, 141, 471
TasI	AATT	2 cut(s)	228, 741
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	624, 751
Tru9I	TTAA	2 cut(s)	624, 751
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	3 cut(s)	280, 292, 389
TseI	GCWGC	2 cut(s)	566, 700
Tsp45I	GTSAC	3 cut(s)	280, 292, 389
TspDTI	ATGAA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	505
XapI	RAATTY	1 cut(s)	741
XceI	RCATGY	1 cut(s)	293
XhoI	CTCGAG	2 cut(s)	116, 470
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.