Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003297

Physical Location & Seq

Genomic Coordinates Reverse (-)

14337198 .. 14338385

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAACATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGAGATTCCGGTGTAGGAAAATCAAATCTGCTATCCCGATTCACCAGAAACGACTTTAGCCACGACTCACGCTCGACCATCGGTGTTGAATTTGCCACACGTAGCATCCAGGTCGACGACAAGATTGTCAAAGCTCAGATATGGGACACTGCCGGCCAAGAAAGGTATCGAGCCATCACGAGCGCTTATTACCGAGGAGCCGTTGGTGCATTACTAGTCTACGACGTGACACGGCACGTGACATTCGAGAACGTTGAAAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACTGTGATTATGCTCGTAGGTAACAAAGCTGATTTGAATCACCTTCGAGCCATCTCTACGGAAGAAGTGAAAGATTTTGCAGAGAGAGAGAACACTTTCTTTATGGAGACTTCGGCACTCGAAGCTATAAATGTAGAAAACGCTTTCACAGAGGTTCTTACACAGATTTACAGAGTTGTAAGCAAGAAGGCTCTTGATGCTGGAGATGATCCAACCACTGCCTTGCCTAAAGGACAAATGATTAACGTCGGAAGTAGAGATGATGTTTCAGCCGTCAAGAAATCTGGTTGCTGCGCGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

218

Amino Acids

24.34

Weight (kDa)

5.31

Isoelectric Point (pI)

19.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 149	9.1e-13	ADP-ribosylation factor family
Ras	PF00071	15 - 175	2.2e-62	Ras family
Roc	PF08477	15 - 129	2.1e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 124	6.1e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28550 AT2G33870 AT3G15060 AT4G18430 AT5G60860
fragaria_vesca	FvH4_3g08320 FvH4_3g19070
malus_domestica	MD03G1237100.v1.1 MD05G1307500.v1.1 MD10G1286600.v1.1 MD11G1257700.v1.1 MD11G1257800.v1.1
prunus_persica	Prupe.4G055200_v2.0.a1 Prupe.4G172300_v2.0.a1
pyrus_communis	pycom05g28420 pycom11g22750
rosa_chinensis	RchiOBHm_Chr5g0009681 RchiOBHm_Chr5g0031861
rosa_laevigata	RLG00000031679 RLG00000033354
rosa_multiflora	Rmu_sc0006311.1_g000001 Rmu_sc0011639.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048410 Rroxscaffold_1G00066530
rosa_rugosa	Rorug04G0444700 Rorug05G0128300
rosa_samantha	Rh5AG076300 Rh5AG222400 Rh5BG071500 Rh5BG222700 Rh5CG084000 Rh5CG245900 Rh5DG072000 Rh5DG227600
rosa_wichuraiana	Rw5G007030 Rw5G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccI	GTMKAC	2 cut(s)	171, 276
AccII	CGCG	1 cut(s)	650
AclI	AACGTT	1 cut(s)	309
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	39
AcvI	CACGTG	1 cut(s)	295
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	43, 146, 314, 391
AhlI	ACTAGT	1 cut(s)	271
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	5 cut(s)	17, 191, 331, 383, 479
AluI	AGCT	5 cut(s)	17, 191, 331, 383, 479
Alw26I	GTCTC	2 cut(s)	330, 455
AlwI	GGATC	1 cut(s)	557
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	645
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	2 cut(s)	242, 650
AsuHPI	GGTGA	2 cut(s)	91, 386
BauI	CACGAG	1 cut(s)	235
BbrPI	CACGTG	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	4 cut(s)	143, 239, 312, 413
BceAI	ACGGC	3 cut(s)	242, 305, 611
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	330, 455
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	1 cut(s)	646
BlsI	GCNGC	1 cut(s)	647
Bme1390I	CCNGG	1 cut(s)	167
BmgBI	CACGTC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	171, 541
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	576
BsaAI	YACGTR	2 cut(s)	158, 295
BsaBI	GATNNNNATC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	209
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	632
Bsh1236I	CGCG	1 cut(s)	650
BshFI	GGCC	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	66, 210
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	330, 455
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	562
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	650
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	562
BssSI	CACGAG	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	44
BstBAI	YACGTR	2 cut(s)	158, 295
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	192, 332
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	650
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	242, 650
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	2 cut(s)	330, 455
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 328, 476, 551
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	1 cut(s)	632
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	2 cut(s)	204, 570
BtsIMutI	CAGTG	3 cut(s)	204, 354, 570
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	2 cut(s)	242, 650
Cfr10I	RCCGGY	1 cut(s)	209
CseI	GACGC	1 cut(s)	356
DdeI	CTNAG	2 cut(s)	192, 332
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	330
Eco47III	AGCGCT	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	39
Eco72I	CACGTG	1 cut(s)	295
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	165
FaiI	YATR	7 cut(s)	10, 12, 199, 365, 458, 482, 655
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	215
FblI	GTMKAC	2 cut(s)	171, 276
Fnu4HI	GCNGC	1 cut(s)	646
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	646
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	2 cut(s)	241, 649
GluI	GCNGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	66, 210
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	2 cut(s)	242, 650
Hin6I	GCGC	2 cut(s)	240, 648
HinP1I	GCGC	2 cut(s)	240, 648
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	62, 96, 122, 391
HpaII	CCGG	2 cut(s)	66, 210
HphI	GGTGA	2 cut(s)	91, 386
Hpy166II	GTNNAC	2 cut(s)	172, 277
Hpy188I	TCNGA	2 cut(s)	195, 605
Hpy188III	TCNNGA	5 cut(s)	93, 235, 304, 548, 631
Hpy8I	GTNNAC	2 cut(s)	172, 277
Hpy99I	CGWCG	3 cut(s)	176, 284, 605
HpyAV	CCTTC	2 cut(s)	407, 535
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	5 cut(s)	157, 282, 294, 309, 600
HpyCH4V	TGCA	2 cut(s)	266, 434
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 328, 476, 551
HpyF3I	CTNAG	2 cut(s)	192, 332
HpySE526I	ACGT	5 cut(s)	157, 282, 294, 309, 600
HspAI	GCGC	2 cut(s)	240, 648
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	562
LmnI	GCTCC	2 cut(s)	254, 328
LpnPI	CCDG	7 cut(s)	79, 115, 152, 179, 223, 540, 624
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	2 cut(s)	171, 541
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	5 cut(s)	157, 282, 294, 309, 600
MaeIII	GTNAC	3 cut(s)	283, 295, 374
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	3 cut(s)	31, 32, 428
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	583, 590
MnlI	CCTC	3 cut(s)	47, 245, 499
MroNI	GCCGGC	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	2 cut(s)	53, 597
MspI	CCGG	2 cut(s)	66, 210
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	4 cut(s)	263, 328, 476, 551
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	1 cut(s)	562
NgoMIV	GCCGGC	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	283, 295
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	3 cut(s)	62, 96, 391
PkrI	GCNGC	1 cut(s)	647
PleI	GAGTC	1 cut(s)	116
PmaCI	CACGTG	1 cut(s)	295
PmlI	CACGTG	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	2 cut(s)	158, 295
Psp1406I	AACGTT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	165
PspCI	CACGTG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	256
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	53, 597
SatI	GCNGC	1 cut(s)	646
Sau3AI	GATC	1 cut(s)	562
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	167
SfaNI	GCATC	2 cut(s)	171, 541
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	5 cut(s)	160, 285, 297, 312, 603
TaqI	TCGA	6 cut(s)	131, 171, 226, 303, 400, 474
TasI	AATT	1 cut(s)	146
TfiI	GAWTC	3 cut(s)	62, 96, 391
Tru1I	TTAA	2 cut(s)	53, 597
Tru9I	TTAA	2 cut(s)	53, 597
TscAI	CASTG	3 cut(s)	211, 361, 577
TseFI	GTSAC	2 cut(s)	283, 295
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	2 cut(s)	283, 295
TspGWI	ACGGA	2 cut(s)	359, 428
TspRI	CASTG	3 cut(s)	211, 361, 577
XagI	CCTNNNNNAGG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	146
XmiI	GTMKAC	2 cut(s)	171, 276
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.