Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003297

Physical Location & Seq

Genomic Coordinates Reverse (-)

2650953 .. 2653115

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G055200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGGGCGTACAGAGCAGACGACGATTATGATTACTTGTTCAAGGTGGTTTTGATCGGTGACTCGGGGGTCGGAAAATCGAACCTTTTGTCCAGGTTCACGAGGAACGAGTTCAGCCTTGAATCAAAGTCCACCATTGGCGTCGAGTTCGCTACCAGAAGCATTCGGGTCGATGATAAGGTCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAAAGGTATCGTGCAATCACAAGTGCGTACTATCGAGGTGCCGTTGGTGCTTTACTAGTCTATGATGTTACTCGTCATGTTACATTTGAGAATGTGGAAAGATGGCTGAAGGAGCTAAGGGATCATACAGATGCCAACATTGTGATCATGCTAGTCGGAAACAAGGGAGATCTGCGTCACCTGCGAGCCGTTTCCACCGAGGATGCTAAGGCTTTTGCTGAACGAGAGAACACATTTTTCATGGAAACGTCTGCCCTCGAGTCGATGAATGTCGACAATGCTTTCACAGAAGTGCTGACCCAGATCTATCGGGTTGTGAGCAGGAAGGCCCTTGACATTGGGGATGATCCAGCAGCCTTGCCCAAAGGACAGACGATCAACGTTGGGGGCAAGGATGATGTATCAGCTGTGAAGAAAGTAGGATGCTGCTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

218

Amino Acids

24.13

Weight (kDa)

5.71

Isoelectric Point (pI)

20.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28550 AT2G33870 AT3G15060 AT4G18430 AT5G60860
fragaria_vesca	FvH4_3g08320 FvH4_3g19070
malus_domestica	MD03G1237100.v1.1 MD05G1307500.v1.1 MD10G1286600.v1.1 MD11G1257700.v1.1 MD11G1257800.v1.1
prunus_persica	Prupe.4G055200_v2.0.a1 Prupe.4G172300_v2.0.a1
pyrus_communis	pycom05g28420 pycom11g22750
rosa_chinensis	RchiOBHm_Chr5g0009681 RchiOBHm_Chr5g0031861
rosa_laevigata	RLG00000031679 RLG00000033354
rosa_multiflora	Rmu_sc0006311.1_g000001 Rmu_sc0011639.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048410 Rroxscaffold_1G00066530
rosa_rugosa	Rorug04G0444700 Rorug05G0128300
rosa_samantha	Rh5AG076300 Rh5AG222400 Rh5BG071500 Rh5BG222700 Rh5CG084000 Rh5CG245900 Rh5DG072000 Rh5DG227600
rosa_wichuraiana	Rw5G007030 Rw5G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	405
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	405
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	489
AciI	CCGC	1 cut(s)	207
AclI	AACGTT	1 cut(s)	597
AclWI	GGATC	2 cut(s)	345, 557
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	2 cut(s)	11, 245
AgsI	TTSAA	2 cut(s)	43, 122
AhlI	ACTAGT	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	92
AleI	CACNNNNGTG	1 cut(s)	506
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	3 cut(s)	331, 623, 650
AluI	AGCT	3 cut(s)	331, 623, 650
AlwI	GGATC	2 cut(s)	345, 557
Ama87I	CYCGRG	2 cut(s)	64, 473
AoxI	GGCC	2 cut(s)	211, 543
ApeKI	GCWGC	2 cut(s)	569, 642
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	71, 386
AvaI	CYCGRG	2 cut(s)	64, 473
BanI	GGYRCC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	581, 629
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	2 cut(s)	242, 389
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	94
BclI	TGATCA	1 cut(s)	360
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	2 cut(s)	272, 368
BfuAI	ACCTGC	1 cut(s)	405
BglII	AGATCT	2 cut(s)	385, 519
BisI	GCNGC	2 cut(s)	570, 643
BlpI	GCTNAGC	1 cut(s)	646
BlsI	GCNGC	2 cut(s)	571, 644
Bme1390I	CCNGG	1 cut(s)	94
BmeT110I	CYCGRG	2 cut(s)	64, 473
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	3 cut(s)	337, 409, 629
Bpu10I	CCTNAGC	2 cut(s)	332, 423
Bpu1102I	GCTNAGC	1 cut(s)	646
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	414
Bse118I	RCCGGY	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	4 cut(s)	424, 565, 616, 644
BseMII	CTCAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	581, 629
BshFI	GGCC	2 cut(s)	213, 545
BshNI	GGYRCC	1 cut(s)	254
BsiHKCI	CYCGRG	2 cut(s)	64, 473
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	213, 545
BsoBI	CYCGRG	2 cut(s)	64, 473
Bsp143I	GATC	7 cut(s)	54, 337, 360, 385, 519, 562, 591
Bsp1720I	GCTNAGC	1 cut(s)	646
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	213, 545
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	345, 557
BspT107I	GGYRCC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	7 cut(s)	54, 337, 360, 385, 519, 562, 591
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	211, 402
BstDEI	CTNAG	4 cut(s)	192, 332, 423, 646
BstF5I	GGATG	4 cut(s)	424, 565, 616, 644
BstKTI	GATC	7 cut(s)	57, 340, 363, 388, 522, 565, 594
BstMBI	GATC	7 cut(s)	54, 337, 360, 385, 519, 562, 591
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 263, 328, 397
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	581, 629
BstX2I	RGATCY	2 cut(s)	385, 519
BstYI	RGATCY	2 cut(s)	385, 519
BsuRI	GGCC	2 cut(s)	213, 545
BtsCI	GGATG	4 cut(s)	424, 565, 616, 644
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	211, 402
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	2 cut(s)	130, 380
Csp6I	GTAC	2 cut(s)	10, 244
CviAII	CATG	3 cut(s)	293, 364, 457
CviQI	GTAC	2 cut(s)	10, 244
DdeI	CTNAG	4 cut(s)	192, 332, 423, 646
DpnI	GATC	7 cut(s)	56, 339, 362, 387, 521, 564, 593
DpnII	GATC	7 cut(s)	54, 337, 360, 385, 519, 562, 591
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	2 cut(s)	64, 473
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	92
FaeI	CATG	3 cut(s)	296, 367, 460
FaiI	YATR	6 cut(s)	30, 279, 294, 342, 365, 458
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	292, 363, 456
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	2 cut(s)	570, 643
FokI	GGATG	3 cut(s)	431, 572, 623
Fsp4HI	GCNGC	2 cut(s)	570, 643
FspBI	CTAG	2 cut(s)	272, 368
GluI	GCNGC	2 cut(s)	570, 643
HaeIII	GGCC	2 cut(s)	213, 545
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	2 cut(s)	130, 380
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	296, 367, 460
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	62, 122, 476
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	71, 386
Hpy166II	GTNNAC	3 cut(s)	99, 132, 490
Hpy188I	TCNGA	3 cut(s)	74, 195, 374
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	3 cut(s)	99, 132, 490
Hpy99I	CGWCG	2 cut(s)	26, 146
HpyAV	CCTTC	2 cut(s)	319, 535
HpyCH4IV	ACGT	2 cut(s)	464, 597
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 263, 328, 397
HpyF3I	CTNAG	4 cut(s)	192, 332, 423, 646
HpySE526I	ACGT	2 cut(s)	464, 597
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	296, 367, 460
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	7 cut(s)	54, 337, 360, 385, 519, 562, 591
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	79, 106, 169, 223, 410, 523, 530, 579
Lsp1109I	GCAGC	2 cut(s)	581, 629
LweI	GCATC	3 cut(s)	337, 409, 629
MaeI	CTAG	2 cut(s)	272, 368
MaeII	ACGT	2 cut(s)	464, 597
MaeIII	GTNAC	4 cut(s)	59, 283, 295, 392
MalI	GATC	7 cut(s)	56, 339, 362, 387, 521, 564, 593
MboI	GATC	7 cut(s)	54, 337, 360, 385, 519, 562, 591
MboII	GAAGA	1 cut(s)	640
MflI	RGATCY	2 cut(s)	385, 519
MlyI	GAGTC	2 cut(s)	56, 485
MmeI	TCCRAC	2 cut(s)	52, 352
MnlI	CCTC	4 cut(s)	96, 245, 409, 482
MroNI	GCCGGC	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	1 cut(s)	652
MslI	CAYNNNNRTG	2 cut(s)	345, 506
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	14, 263, 328, 397
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	7 cut(s)	54, 337, 360, 385, 519, 562, 591
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	296, 367, 460
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	59, 392
OliI	CACNNNNGTG	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	473
PaqCI	CACCTGC	1 cut(s)	405
PctI	GAATGC	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	571, 644
PleI	GAGTC	2 cut(s)	56, 484
PpsI	GAGTC	2 cut(s)	56, 484
Psp1406I	AACGTT	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	544
PspXI	VCTCGAGB	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	385, 519
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	11, 245
RsaNI	GTAC	2 cut(s)	10, 244
RseI	CAYNNNNRTG	2 cut(s)	345, 506
SalI	GTCGAC	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	2 cut(s)	570, 643
Sau3AI	GATC	7 cut(s)	54, 337, 360, 385, 519, 562, 591
Sau96I	GGNCC	1 cut(s)	544
SchI	GAGTC	2 cut(s)	56, 485
ScrFI	CCNGG	1 cut(s)	94
SfaNI	GCATC	3 cut(s)	337, 409, 629
Sfr274I	CTCGAG	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	345, 506
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	271
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	2 cut(s)	272, 368
StyD4I	CCNGG	1 cut(s)	92
TaiI	ACGT	2 cut(s)	467, 600
TaqI	TCGA	7 cut(s)	80, 144, 171, 250, 474, 479, 489
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TseFI	GTSAC	2 cut(s)	59, 392
TseI	GCWGC	2 cut(s)	569, 642
Tsp45I	GTSAC	2 cut(s)	59, 392
TspDTI	ATGAA	2 cut(s)	445, 497
XhoI	CTCGAG	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	2 cut(s)	272, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.