AT1G29220

transcriptional regulator family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008773
Physical Location & Seq
Reverse (-)
10210520 .. 10212722
2203 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29220.1

Sequence Viewer

Length: 1056 bp
ATGGCTCCGAAGAAGTCTGAAGGAATCGCTTTGCTTTCCGTTTACAGTGATGAAGATGACGAAGAGATGGAAGACGCCGAGGAAGAGGAAGAAGAGGATGAGAAGCAGAGAAATCAGGAAGAGAGTGAAAAAATAATTGAAGAAGATCAGGTAGAAGAAGCGAATTATATGGATGAAGAAGAGAAAGGAAGAGGAGGAGAAGATTCTAGAACGCCGAGGCTATTAGATGGTGTTGGAGCTTCTTCTAGTGCTCATGGGACTCCTCGTTCACTTGATAACGATGAATCATCGAGACCTGATTGGAGTAATCGAATGATTGGTGAGTCTGGAGTTGCGGATGGTGAGAGAGGTGATGATGCTTCAGGGGAAAGTAGTGATACGTTATTGGATCAGTTTCTTCCGCCAAGACCGAGAGAGAGGTGCTCTGAGGAGCTGCAAAGGAAAATAGATAAGTTTCTGAGCTTGAAAAAGATGGGGAAGAGTTTCAATTCAGAAGTGAGGAATAGGAAGGAATACAGGAATCCTGACTTCCTATTGCATGCTGTATCTTACCAAGACATTGACCAGATTGGTTCGTGTTTCAGTAAAGATGTATTTGATCCCAGTGGATATGACCCAAGTGACTTCTGTGATGCAATAGAAATCGACATGAAGAATGAGAGGGAAAGGAAGGAACAAGAAAGCAAGAAGAACCAGAAGCTTGACTTTGTTTCTGCTGGTACTCAACCTGGGGCGGTTTTCGCTGCTCAAAAGCCTAACATCCCCATTCCAGGTATTCCAGCTTTAGCTACTAGTGGATTGCCTTCCATACCAACCGAAATTGCTGCTCGTGATGGTAGACCGAACAAGAAATCCAAATGGGATAAGGTTGATGGGGACGTAAAGAATCCTCCTCTAGCAGCTGGAACTCAGGATTCTATATCCTCAATCCGGTCTAATGCAGCTCTTGTATCTGCTACAAGTGCTGGTTCTGGATACTCAGCTTTTGCGCAACAACGGAGACGAGAGGTGGAAGGAAGAAGATCTTCCGAGAGGAAATTGGAGAGAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCNGP

Protein Analysis

351

Amino Acids

39.0

Weight (kDa)

4.7

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCNGP PF07818 133 - 226 1e-28 HCNGP-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 990
AccI GTMKAC 1 cut(s) 838
AciI CCGC 3 cut(s) 335, 401, 734
AclWI GGATC 2 cut(s) 396, 593
AcuI CTGAAG 2 cut(s) 39, 345
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 721
AfiI CCNNNNNNNGG 2 cut(s) 770, 930
AgsI TTSAA 3 cut(s) 140, 466, 487
AhlI ACTAGT 1 cut(s) 791
AjnI CCWGG 2 cut(s) 727, 769
AloI GAACNNNNNNTCC 4 cut(s) 250, 282, 836, 868
AluBI AGCT 9 cut(s) 239, 433, 462, 700, 782, 788, 902, 944, 983
AluI AGCT 9 cut(s) 239, 433, 462, 700, 782, 788, 902, 944, 983
Alw21I GWGCWC 2 cut(s) 253, 425
Alw26I GTCTC 2 cut(s) 286, 994
AlwI GGATC 2 cut(s) 396, 593
ApeKI GCWGC 5 cut(s) 433, 743, 824, 899, 941
Asp700I GAANNNNTTC 2 cut(s) 482, 1024
AspLEI GCGC 1 cut(s) 991
AsuHPI GGTGA 3 cut(s) 332, 353, 362
BauI CACGAG 1 cut(s) 828
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 2 cut(s) 253, 425
BbvI GCAGC 5 cut(s) 420, 730, 811, 911, 953
BccI CCATC 6 cut(s) 61, 221, 332, 466, 827, 866
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 2 cut(s) 729, 771
BciVI GTATCC 1 cut(s) 968
BcoDI GTCTC 2 cut(s) 286, 994
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 4 cut(s) 207, 246, 792, 896
BfuI GTATCC 1 cut(s) 968
BglII AGATCT 1 cut(s) 1022
BisI GCNGC 5 cut(s) 434, 744, 825, 900, 942
BlsI GCNGC 5 cut(s) 435, 745, 826, 901, 943
Bme1390I CCNGG 2 cut(s) 729, 771
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 729, 771
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 2 cut(s) 346, 622
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 286
BsaJI CCNNGG 3 cut(s) 78, 215, 728
BsaWI WCCGGW 1 cut(s) 930
Bsc4I CCNNNNNNNGG 2 cut(s) 770, 930
Bse1I ACTGG 1 cut(s) 603
BseBI CCWGG 2 cut(s) 729, 771
BseDI CCNNGG 3 cut(s) 78, 215, 728
BseGI GGATG 4 cut(s) 103, 178, 343, 759
BseLI CCNNNNNNNGG 2 cut(s) 770, 930
BseMII CTCAG 4 cut(s) 417, 449, 923, 993
BseNI ACTGG 1 cut(s) 603
BseRI GAGGAG 5 cut(s) 207, 210, 252, 443, 882
BseXI GCAGC 5 cut(s) 420, 730, 811, 911, 953
BsiHKAI GWGCWC 2 cut(s) 253, 425
BsiSI CCGG 1 cut(s) 931
BslFI GGGAC 2 cut(s) 271, 890
BslI CCNNNNNNNGG 2 cut(s) 770, 930
BsmAI GTCTC 2 cut(s) 286, 994
BsmBI CGTCTC 1 cut(s) 994
BsmFI GGGAC 2 cut(s) 271, 890
Bso31I GGTCTC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 253, 425
Bsp143I GATC 4 cut(s) 145, 388, 598, 1022
BspACI CCGC 3 cut(s) 335, 401, 734
BspCNI CTCAG 4 cut(s) 418, 450, 922, 992
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 396, 593
BspTNI GGTCTC 1 cut(s) 286
BsrI ACTGG 1 cut(s) 603
BssECI CCNNGG 3 cut(s) 78, 215, 728
BssMI GATC 4 cut(s) 145, 388, 598, 1022
BssNI GRCGYC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 828
Bst2BI CACGAG 1 cut(s) 828
Bst2UI CCWGG 2 cut(s) 729, 771
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 7 cut(s) 57, 78, 87, 114, 174, 184, 473
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 4 cut(s) 426, 458, 909, 979
BstF5I GGATG 4 cut(s) 103, 178, 343, 759
BstHHI GCGC 1 cut(s) 991
BstKTI GATC 4 cut(s) 148, 391, 601, 1025
BstMAI GTCTC 2 cut(s) 286, 994
BstMBI GATC 4 cut(s) 145, 388, 598, 1022
BstMWI GCNNNNNNNGC 2 cut(s) 740, 962
BstNI CCWGG 2 cut(s) 729, 771
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 727, 769
BstV1I GCAGC 5 cut(s) 420, 730, 811, 911, 953
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 1022
BstYI RGATCY 1 cut(s) 1022
BsuI GTATCC 1 cut(s) 968
BtsCI GGATG 4 cut(s) 103, 178, 343, 759
BtsIMutI CAGTG 2 cut(s) 52, 610
Cac8I GCNNGC 1 cut(s) 540
CfoI GCGC 1 cut(s) 991
CseI GACGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 720
CviAII CATG 3 cut(s) 254, 539, 649
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 4 cut(s) 426, 458, 909, 979
DpnI GATC 4 cut(s) 147, 390, 600, 1024
DpnII GATC 4 cut(s) 145, 388, 598, 1022
Eam1104I CTCTTC 7 cut(s) 57, 78, 87, 114, 174, 184, 473
EarI CTCTTC 7 cut(s) 57, 78, 87, 114, 174, 184, 473
EciI GGCGGA 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 39, 345
EcoRII CCWGG 2 cut(s) 727, 769
Esp3I CGTCTC 1 cut(s) 994
FaeI CATG 3 cut(s) 257, 542, 652
FaiI YATR 8 cut(s) 168, 170, 255, 540, 612, 650, 809, 920
FalI AAGNNNNNCTT 4 cut(s) 689, 721, 1009, 1041
FaqI GGGAC 2 cut(s) 271, 890
FatI CATG 3 cut(s) 253, 538, 648
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 5 cut(s) 434, 744, 825, 900, 942
FokI GGATG 4 cut(s) 110, 185, 350, 746
Fsp4HI GCNGC 5 cut(s) 434, 744, 825, 900, 942
FspBI CTAG 4 cut(s) 207, 246, 792, 896
FspI TGCGCA 1 cut(s) 990
GlaI GCGC 1 cut(s) 990
GluI GCNGC 5 cut(s) 434, 744, 825, 900, 942
GsuI CTGGAG 1 cut(s) 348
HapII CCGG 1 cut(s) 931
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 991
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 257, 542, 652
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 8 cut(s) 24, 203, 259, 284, 323, 520, 886, 914
HpaII CCGG 1 cut(s) 931
HphI GGTGA 3 cut(s) 332, 353, 362
Hpy166II GTNNAC 3 cut(s) 43, 269, 839
Hpy188I TCNGA 6 cut(s) 9, 19, 427, 459, 493, 1030
Hpy188III TCNNGA 8 cut(s) 116, 207, 291, 327, 524, 830, 911, 972
Hpy8I GTNNAC 3 cut(s) 43, 269, 839
HpyAV CCTTC 5 cut(s) 14, 502, 664, 813, 1007
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 380, 879
HpyCH4V TGCA 4 cut(s) 436, 538, 635, 941
HpyF10VI GCNNNNNNNGC 2 cut(s) 740, 962
HpyF3I CTNAG 4 cut(s) 426, 458, 909, 979
HpySE526I ACGT 2 cut(s) 380, 879
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 257, 542, 652
HspAI GCGC 1 cut(s) 989
Kzo9I GATC 4 cut(s) 145, 388, 598, 1022
LmnI GCTCC 3 cut(s) 10, 236, 430
Lsp1109I GCAGC 5 cut(s) 420, 730, 811, 911, 953
LweI GCATC 2 cut(s) 346, 622
MaeI CTAG 4 cut(s) 207, 246, 792, 896
MaeII ACGT 2 cut(s) 380, 879
MaeIII GTNAC 1 cut(s) 620
MalI GATC 4 cut(s) 147, 390, 600, 1024
MboI GATC 4 cut(s) 145, 388, 598, 1022
MflI RGATCY 1 cut(s) 1022
MhlI GDGCHC 2 cut(s) 253, 425
MluCI AATT 5 cut(s) 135, 163, 487, 819, 1037
MlyI GAGTC 2 cut(s) 253, 332
MmeI TCCRAC 1 cut(s) 214
MroXI GAANNNNTTC 2 cut(s) 482, 1024
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 1 cut(s) 931
MspR9I CCNGG 2 cut(s) 729, 771
MvaI CCWGG 2 cut(s) 729, 771
MwoI GCNNNNNNNGC 2 cut(s) 740, 962
NdeII GATC 4 cut(s) 145, 388, 598, 1022
NlaIII CATG 3 cut(s) 257, 542, 652
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 2 cut(s) 103, 240
NmuCI GTSAC 1 cut(s) 620
NsbI TGCGCA 1 cut(s) 990
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PdmI GAANNNNTTC 2 cut(s) 482, 1024
PfeI GAWTC 6 cut(s) 24, 203, 284, 520, 886, 914
PkrI GCNGC 5 cut(s) 435, 745, 826, 901, 943
PleI GAGTC 2 cut(s) 253, 331
PpsI GAGTC 2 cut(s) 253, 331
Psp6I CCWGG 2 cut(s) 727, 769
PspGI CCWGG 2 cut(s) 727, 769
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 1022
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
SatI GCNGC 5 cut(s) 434, 744, 825, 900, 942
Sau3AI GATC 4 cut(s) 145, 388, 598, 1022
SchI GAGTC 2 cut(s) 253, 332
ScrFI CCNGG 2 cut(s) 729, 771
SduI GDGCHC 2 cut(s) 253, 425
SfaNI GCATC 2 cut(s) 346, 622
SpeI ACTAGT 1 cut(s) 791
SphI GCATGC 1 cut(s) 542
Sse9I AATT 5 cut(s) 135, 163, 487, 819, 1037
SsiI CCGC 3 cut(s) 335, 401, 734
SspMI CTAG 4 cut(s) 207, 246, 792, 896
StyD4I CCNGG 2 cut(s) 727, 769
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 2 cut(s) 383, 882
TaqI TCGA 3 cut(s) 290, 310, 645
TaqII GACCGA 2 cut(s) 424, 856
TasI AATT 5 cut(s) 135, 163, 487, 819, 1037
TfiI GAWTC 6 cut(s) 24, 203, 284, 520, 886, 914
TscAI CASTG 2 cut(s) 52, 610
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 5 cut(s) 433, 743, 824, 899, 941
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 4 cut(s) 66, 189, 297, 665
TspGWI ACGGA 2 cut(s) 28, 1012
TspRI CASTG 2 cut(s) 52, 610
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 542
XmiI GTMKAC 1 cut(s) 838
XmnI GAANNNNTTC 2 cut(s) 482, 1024
XspI CTAG 4 cut(s) 207, 246, 792, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.