Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008773

Physical Location & Seq

Genomic Coordinates Forward (+)

3062147 .. 3066745

Gene Structure 4599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G063800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGCCTCGAGAAAGAAGCAATCCGAAGCCATGGCTTTGCTGGTGTCCAATTACAACGATGAGGAAGAGGATGAAGACATGGAGGATATTGAACGAGACAAAGAAGAAGAAGAAGAATATGATGAATATCAAGAACGACGAGAACAGCGAGAATACGACGATTACGGAGAGCTGAGAAGAGGCTCGGAAGATTCTTCAATGGTAGACATGGATAGAATGGTAGCTGGTGATTCTGGTAACGACGATAGCGCACCGCCTAATGCTGGCGATAATGAGAATTTGACTCCGAATGAAGGTCAATTTCGTCATTCAACGCCGCAACTACGACAGACGGTGCCGTCGGATAGTTTAAATAGAAGTAGAAGAGGGGCGCTTACGATTGTGGACTATGGGCATGATGAAGTTGCTATGTCTCCTGAGCCTGAGGAGGGTGAAATAGAAGGAAGTGGTCGTGTGAGGTTCGGTGCAGATCTTTTATCTGCTAATGGTGATTTCCACGATAAGACACCTCCTGGAACAGTTCACATCCTAACACCTCTCGATCAAGCGACTCCTCAATTATCTGAACCATCTCAATCTGATACAATGAATGATGCTGCACTTGAATCAGAGGGTATAGATGCTGAACAGGCTGTTGCAGAAGAGCAAAAAGATGTTGATCCGTTAGATAAGTTTCTCCCGCCACCAGTGAAAGCCAAGTGTTCAGAGGAGCTGCAAAGGAGGATAAATAAGTTTCTTGAATTAAAGAGATCTGGGAAAAGCTTCAATGCAGGATTGCGCAATAAGAAGGACTATAGAAACCCAGACTTTCTATTGCATGCAGTGAGGTATCAAGATATTGATCAGATAGGGTCTTGCTTCAGTAAAGATGTATTTGACCCTCATGGATTTGACAAAAGCGACTACTATGATGAAATAGAGGCTGAGATGAGGCGTGAAATGGAAAGGAAAGATCAAGAAAGGAAGAGGAGTCAAAAGATTGAATATGTTTCAGGAGGAACACAGCCTGGAATAGTTGGCGCTGCACCTAAAATTAACGTACCTGTTCCAGGTGTTTCGACCATGGCTGCTTCTGGAATGAACTCCTTGCCACCTGCTCCTGATGTCATGCCACGGGACGGTAGACAGAACAAGAAGTCAAAGTGGGATAAGGTAGATGGTGATCGAAAGAATCCTCTTCCCTCTGGAGTGCAGGATTCTATGTCCACTGTTGGGACTCATGCAACACTCTTATCTTCTGGTGCTGGATACATGGCTTTTGCGCAACAGAGACGGAGAGAGGTGGAGGAGAAACGATCTAGTGAAAGGAAGTTAGACAGAAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCNGP

Protein Analysis

443

Amino Acids

49.67

Weight (kDa)

4.76

Isoelectric Point (pI)

72.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29220 AT1G29220
fragaria_vesca	FvH4_3g07540 FvH4_3g07540 FvH4_3g37800 FvH4_3g37800
malus_domestica	MD05G1298600.v1.1 MD10G1277900.v1.1
prunus_persica	Prupe.4G063800_v2.0.a1
pyrus_communis	pycom05g27640 pycom10g23190
rosa_chinensis	RchiOBHm_Chr5g0011231
rosa_laevigata	RLG00000031820
rosa_multiflora	Rmu_sc0002990.1_g000005 Rmu_sc0035380.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065170
rosa_rugosa	Rorug04G0455900 Rorug04G0456000
rosa_samantha	Rh5AG087900 Rh5BG082700 Rh5CG095700 Rh5DG082600
rosa_wichuraiana	Rw5G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1102
AasI	GACNNNNNNGTC	1 cut(s)	337
Acc16I	TGCGCA	2 cut(s)	779, 1263
Acc36I	ACCTGC	1 cut(s)	1102
AccB1I	GGYRCC	1 cut(s)	334
AccI	GTMKAC	2 cut(s)	204, 1123
AciI	CCGC	3 cut(s)	254, 317, 680
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	844
AfaI	GTAC	1 cut(s)	1041
AfiI	CCNNNNNNNGG	6 cut(s)	263, 293, 428, 1049, 1118, 1212
AgsI	TTSAA	7 cut(s)	92, 198, 312, 605, 740, 766, 983
AjnI	CCWGG	3 cut(s)	511, 1006, 1048
AluBI	AGCT	4 cut(s)	172, 224, 712, 762
AluI	AGCT	4 cut(s)	172, 224, 712, 762
Alw26I	GTCTC	3 cut(s)	90, 417, 1264
AlwI	GGATC	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	596, 712, 1022, 1067
ApoI	RAATTY	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	761
AspLEI	GCGC	5 cut(s)	251, 373, 780, 1022, 1264
AsuHPI	GGTGA	4 cut(s)	239, 443, 500, 1172
AvaI	CYCGRG	1 cut(s)	7
AxyI	CCTNAGG	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	4 cut(s)	583, 699, 1009, 1054
BccI	CCATC	2 cut(s)	577, 1151
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	3 cut(s)	513, 1008, 1050
BciVI	GTATCC	1 cut(s)	1241
BclI	TGATCA	1 cut(s)	841
BcoDI	GTCTC	3 cut(s)	90, 417, 1264
BfaI	CTAG	1 cut(s)	1299
BfmI	CTRYAG	1 cut(s)	793
BfoI	RGCGCY	2 cut(s)	374, 1023
BfuAI	ACCTGC	1 cut(s)	1102
BfuI	GTATCC	1 cut(s)	1241
BglII	AGATCT	3 cut(s)	469, 749, 1322
BisI	GCNGC	5 cut(s)	317, 597, 713, 1023, 1068
BlsI	GCNGC	5 cut(s)	318, 598, 714, 1024, 1069
Bme1390I	CCNGG	3 cut(s)	513, 1008, 1050
BmeT110I	CYCGRG	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	3 cut(s)	513, 1008, 1050
BmsI	GCATC	2 cut(s)	583, 610
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	1206
Bpu10I	CCTNAGC	1 cut(s)	417
BsaBI	GATNNNNATC	4 cut(s)	126, 657, 840, 1161
BsaJI	CCNNGG	3 cut(s)	30, 1062, 1112
Bsc4I	CCNNNNNNNGG	6 cut(s)	263, 293, 428, 1049, 1118, 1212
Bse1I	ACTGG	1 cut(s)	686
Bse21I	CCTNAGG	1 cut(s)	423
Bse8I	GATNNNNATC	4 cut(s)	126, 657, 840, 1161
BseBI	CCWGG	3 cut(s)	513, 1008, 1050
BseDI	CCNNGG	3 cut(s)	30, 1062, 1112
BseGI	GGATG	2 cut(s)	76, 525
BseJI	GATNNNNATC	4 cut(s)	126, 657, 840, 1161
BseLI	CCNNNNNNNGG	6 cut(s)	263, 293, 428, 1049, 1118, 1212
BseMII	CTCAG	4 cut(s)	164, 408, 414, 915
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	5 cut(s)	440, 543, 722, 982, 1301
BseXI	GCAGC	4 cut(s)	583, 699, 1009, 1054
BsgI	GTGCAG	4 cut(s)	486, 582, 1008, 1211
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	7
BslFI	GGGAC	2 cut(s)	1130, 1228
BslI	CCNNNNNNNGG	6 cut(s)	263, 293, 428, 1049, 1118, 1212
BsmAI	GTCTC	3 cut(s)	90, 417, 1264
BsmBI	CGTCTC	1 cut(s)	1264
BsmFI	GGGAC	2 cut(s)	1130, 1228
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	7
Bsp143I	GATC	9 cut(s)	469, 541, 658, 749, 841, 952, 1162, 1295, 1322
Bsp19I	CCATGG	2 cut(s)	30, 1062
BspACI	CCGC	3 cut(s)	254, 317, 680
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	165, 409, 415, 916
BspLI	GGNNCC	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	1102
BspPI	GGATC	1 cut(s)	653
BspQI	GCTCTTC	1 cut(s)	636
BspT107I	GGYRCC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	686
BssECI	CCNNGG	3 cut(s)	30, 1062, 1112
BssMI	GATC	9 cut(s)	469, 541, 658, 749, 841, 952, 1162, 1295, 1322
BssT1I	CCWWGG	2 cut(s)	30, 1062
Bst2UI	CCWGG	3 cut(s)	513, 1008, 1050
Bst4CI	ACNGT	4 cut(s)	334, 520, 1121, 1210
Bst6I	CTCTTC	6 cut(s)	60, 172, 358, 636, 959, 1182
BstC8I	GCNNGC	2 cut(s)	265, 819
BstDEI	CTNAG	4 cut(s)	173, 417, 423, 924
BstDSI	CCRYGG	3 cut(s)	30, 1062, 1112
BstENI	CCTNNNNNAGG	1 cut(s)	1047
BstF5I	GGATG	2 cut(s)	76, 525
BstH2I	RGCGCY	2 cut(s)	374, 1023
BstHHI	GCGC	5 cut(s)	251, 373, 780, 1022, 1264
BstKTI	GATC	9 cut(s)	472, 544, 661, 752, 844, 955, 1165, 1298, 1325
BstMAI	GTCTC	3 cut(s)	90, 417, 1264
BstMBI	GATC	9 cut(s)	469, 541, 658, 749, 841, 952, 1162, 1295, 1322
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	3 cut(s)	513, 1008, 1050
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	3 cut(s)	511, 1006, 1048
BstSFI	CTRYAG	1 cut(s)	793
BstV1I	GCAGC	4 cut(s)	583, 699, 1009, 1054
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	3 cut(s)	469, 749, 1322
BstYI	RGATCY	3 cut(s)	469, 749, 1322
Bsu36I	CCTNAGG	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	1241
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	3 cut(s)	30, 1062, 1112
BtsCI	GGATG	2 cut(s)	76, 525
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	3 cut(s)	693, 828, 1206
BveI	ACCTGC	1 cut(s)	1102
Cac8I	GCNNGC	2 cut(s)	265, 819
CfoI	GCGC	5 cut(s)	251, 373, 780, 1022, 1264
Csp6I	GTAC	1 cut(s)	1040
CviQI	GTAC	1 cut(s)	1040
DdeI	CTNAG	4 cut(s)	173, 417, 423, 924
DpnI	GATC	9 cut(s)	471, 543, 660, 751, 843, 954, 1164, 1297, 1324
DpnII	GATC	9 cut(s)	469, 541, 658, 749, 841, 952, 1162, 1295, 1322
DraI	TTTAAA	1 cut(s)	351
DrdI	GACNNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	337
Eam1104I	CTCTTC	6 cut(s)	60, 172, 358, 636, 959, 1182
EarI	CTCTTC	6 cut(s)	60, 172, 358, 636, 959, 1182
Eco130I	CCWWGG	2 cut(s)	30, 1062
Eco57I	CTGAAG	1 cut(s)	844
Eco81I	CCTNAGG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	1047
EcoRII	CCWGG	3 cut(s)	511, 1006, 1048
EcoT14I	CCWWGG	2 cut(s)	30, 1062
ErhI	CCWWGG	2 cut(s)	30, 1062
Esp3I	CGTCTC	1 cut(s)	1264
FaqI	GGGAC	2 cut(s)	1130, 1228
FauI	CCCGC	1 cut(s)	687
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	2 cut(s)	204, 1123
Fnu4HI	GCNGC	5 cut(s)	317, 597, 713, 1023, 1068
FokI	GGATG	2 cut(s)	83, 512
Fsp4HI	GCNGC	5 cut(s)	317, 597, 713, 1023, 1068
FspBI	CTAG	1 cut(s)	1299
FspI	TGCGCA	2 cut(s)	779, 1263
GlaI	GCGC	5 cut(s)	250, 372, 779, 1021, 1263
GluI	GCNGC	5 cut(s)	317, 597, 713, 1023, 1068
GsuI	CTGGAG	1 cut(s)	1206
HaeII	RGCGCY	2 cut(s)	374, 1023
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	5 cut(s)	251, 373, 780, 1022, 1264
Hin6I	GCGC	5 cut(s)	249, 371, 778, 1020, 1262
HinP1I	GCGC	5 cut(s)	249, 371, 778, 1020, 1262
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	9 cut(s)	191, 230, 283, 550, 605, 970, 1171, 1196, 1216
HphI	GGTGA	4 cut(s)	239, 443, 500, 1172
Hpy166II	GTNNAC	5 cut(s)	205, 385, 523, 1124, 1206
Hpy188I	TCNGA	9 cut(s)	25, 187, 288, 343, 565, 580, 610, 706, 846
Hpy8I	GTNNAC	5 cut(s)	205, 385, 523, 1124, 1206
Hpy99I	CGWCG	4 cut(s)	141, 161, 245, 343
HpyAV	CCTTC	3 cut(s)	287, 434, 781
HpyCH4III	ACNGT	4 cut(s)	334, 520, 1121, 1210
HpyCH4IV	ACGT	1 cut(s)	1038
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	4 cut(s)	173, 417, 423, 924
HpySE526I	ACGT	1 cut(s)	1038
HspAI	GCGC	5 cut(s)	249, 371, 778, 1020, 1262
Ksp22I	TGATCA	1 cut(s)	841
Kzo9I	GATC	9 cut(s)	469, 541, 658, 749, 841, 952, 1162, 1295, 1322
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	2 cut(s)	709, 1102
Lsp1109I	GCAGC	4 cut(s)	583, 699, 1009, 1054
LweI	GCATC	2 cut(s)	583, 610
MaeI	CTAG	1 cut(s)	1299
MaeII	ACGT	1 cut(s)	1038
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	9 cut(s)	471, 543, 660, 751, 843, 954, 1164, 1297, 1324
MboI	GATC	9 cut(s)	469, 541, 658, 749, 841, 952, 1162, 1295, 1322
MflI	RGATCY	3 cut(s)	469, 749, 1322
MluCI	AATT	6 cut(s)	49, 277, 299, 557, 740, 1032
MlyI	GAGTC	4 cut(s)	277, 544, 979, 1210
MmeI	TCCRAC	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	3 cut(s)	350, 743, 1035
MspR9I	CCNGG	3 cut(s)	513, 1008, 1050
MvaI	CCWGG	3 cut(s)	513, 1008, 1050
MwoI	GCNNNNNNNGC	1 cut(s)	629
NcoI	CCATGG	2 cut(s)	30, 1062
NdeII	GATC	9 cut(s)	469, 541, 658, 749, 841, 952, 1162, 1295, 1322
NlaIV	GGNNCC	1 cut(s)	336
NsbI	TGCGCA	2 cut(s)	779, 1263
NspI	RCATGY	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	821
PaeR7I	CTCGAG	1 cut(s)	7
PaqCI	CACCTGC	1 cut(s)	1102
PciSI	GCTCTTC	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	5 cut(s)	191, 230, 605, 1171, 1196
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	5 cut(s)	318, 598, 714, 1024, 1069
PleI	GAGTC	4 cut(s)	277, 544, 978, 1210
PpsI	GAGTC	4 cut(s)	277, 544, 978, 1210
Psp6I	CCWGG	3 cut(s)	511, 1006, 1048
PspGI	CCWGG	3 cut(s)	511, 1006, 1048
PspN4I	GGNNCC	1 cut(s)	336
PsuI	RGATCY	3 cut(s)	469, 749, 1322
RsaI	GTAC	1 cut(s)	1041
RsaNI	GTAC	1 cut(s)	1040
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	350, 743, 1035
SatI	GCNGC	5 cut(s)	317, 597, 713, 1023, 1068
Sau3AI	GATC	9 cut(s)	469, 541, 658, 749, 841, 952, 1162, 1295, 1322
SchI	GAGTC	4 cut(s)	277, 544, 979, 1210
ScrFI	CCNGG	3 cut(s)	513, 1008, 1050
SfaNI	GCATC	2 cut(s)	583, 610
SfcI	CTRYAG	1 cut(s)	793
Sfr274I	CTCGAG	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
SphI	GCATGC	1 cut(s)	821
Sse9I	AATT	6 cut(s)	49, 277, 299, 557, 740, 1032
SsiI	CCGC	3 cut(s)	254, 317, 680
SspMI	CTAG	1 cut(s)	1299
StyD4I	CCNGG	3 cut(s)	511, 1006, 1048
StyI	CCWWGG	2 cut(s)	30, 1062
TaaI	ACNGT	4 cut(s)	334, 520, 1121, 1210
TaiI	ACGT	1 cut(s)	1041
TaqI	TCGA	4 cut(s)	8, 540, 1058, 1165
TasI	AATT	6 cut(s)	49, 277, 299, 557, 740, 1032
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	5 cut(s)	191, 230, 605, 1171, 1196
Tru1I	TTAA	3 cut(s)	350, 743, 1035
Tru9I	TTAA	3 cut(s)	350, 743, 1035
TscAI	CASTG	3 cut(s)	693, 828, 1213
TseI	GCWGC	4 cut(s)	596, 712, 1022, 1067
TspDTI	ATGAA	7 cut(s)	87, 138, 306, 414, 602, 927, 1094
TspGWI	ACGGA	3 cut(s)	180, 651, 1288
TspRI	CASTG	3 cut(s)	693, 828, 1213
XagI	CCTNNNNNAGG	1 cut(s)	1047
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	7
XmiI	GTMKAC	2 cut(s)	204, 1123
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	1 cut(s)	1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.