Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008773

Physical Location & Seq

Genomic Coordinates Forward (+)

60978258 .. 60980274

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0455900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAACAAGCCGACTTATAATGTGGTATTCTCGAAAGATAATGTCTCTAAGGATCTGAACAAAGTGTGGAAGGAAGAGGTGGAATCCGTCTTTGCATCTCATGGCCTAACCTGCAGATTGAATAAGGATGAGTGTAAAATGATCCTGGAAACAGGTAATACTGAGGACGAAGATATCATTAATAGGGCTAGGCGTGCTCTCTGTGTTCTAGCATGTGGTCTGAGCACACAATGGGTTAAACCAATATTGCTCGGACAAATCTATTGTGATGCTATAAAGATAGAGAAACCAGATGAGATGAGTGAGGAAGAATTTTCAAGCAATTATGATGATTTCATCGACAAATTTGAAAAGTTATATGAACTCCAGCGCAAGTGGTACTGCTTTGTTCTTTTTTTTGAAGAATGTATAACGGTTCTGGCTACTTCGTTTCAAGCAACAAGCGCAGTGATGTCCCTTGTTCGAGAAAGCCTTTTCGGCACTATCCCCTTTCAAGATAATGTTGAGATACTGATAAGATGTATAGAAAATTACGATCAGGAGGAAAAAACTTTAACAAATAATCTAGAGTTGTTCTGCTCTTTGCTTGCTGGAGTTAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCNGP

Protein Analysis

201

Amino Acids

23.23

Weight (kDa)

4.58

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29220 AT1G29220
fragaria_vesca	FvH4_3g07540 FvH4_3g07540 FvH4_3g37800 FvH4_3g37800
malus_domestica	MD05G1298600.v1.1 MD10G1277900.v1.1
prunus_persica	Prupe.4G063800_v2.0.a1
pyrus_communis	pycom05g27640 pycom10g23190
rosa_chinensis	RchiOBHm_Chr5g0011231
rosa_laevigata	RLG00000031820
rosa_multiflora	Rmu_sc0002990.1_g000005 Rmu_sc0035380.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065170
rosa_rugosa	Rorug04G0455900 Rorug04G0456000
rosa_samantha	Rh5AG087900 Rh5BG082700 Rh5CG095700 Rh5DG082600
rosa_wichuraiana	Rw5G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
Acc36I	ACCTGC	1 cut(s)	119
AclWI	GGATC	2 cut(s)	60, 136
AcsI	RAATTY	2 cut(s)	311, 344
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	6 cut(s)	121, 318, 350, 401, 434, 494
AjnI	CCWGG	1 cut(s)	144
Alw21I	GWGCWC	2 cut(s)	199, 227
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	60, 136
AoxI	GGCC	1 cut(s)	103
ApoI	RAATTY	2 cut(s)	311, 344
AseI	ATTAAT	1 cut(s)	180
AspLEI	GCGC	2 cut(s)	372, 446
Bbv12I	GWGCWC	2 cut(s)	199, 227
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	3 cut(s)	189, 209, 566
BfmI	CTRYAG	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	477
Bme1390I	CCNGG	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	104, 259
BpmI	CTGGAG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	153, 212
BshFI	GGCC	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	199, 227
BslFI	GGGAC	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	199, 227
Bsp143I	GATC	3 cut(s)	52, 141, 535
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	154, 213
BspMAI	CTGCAG	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	2 cut(s)	60, 136
BssMI	GATC	3 cut(s)	52, 141, 535
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	195, 588
BstDEI	CTNAG	3 cut(s)	48, 162, 221
BstF5I	GGATG	1 cut(s)	133
BstHHI	GCGC	2 cut(s)	372, 446
BstKTI	GATC	3 cut(s)	55, 144, 538
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	3 cut(s)	52, 141, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 194, 443, 477
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	195, 588
CfoI	GCGC	2 cut(s)	372, 446
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	101, 213
CviJI	RGCY	5 cut(s)	10, 105, 188, 422, 471
CviKI_1	RGCY	5 cut(s)	10, 105, 188, 422, 471
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	3 cut(s)	48, 162, 221
DpnI	GATC	3 cut(s)	54, 143, 537
DpnII	GATC	3 cut(s)	52, 141, 535
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	175
FaeI	CATG	2 cut(s)	104, 216
FaiI	YATR	9 cut(s)	18, 102, 214, 275, 327, 358, 360, 410, 524
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	2 cut(s)	100, 212
FokI	GGATG	1 cut(s)	140
FspBI	CTAG	3 cut(s)	189, 209, 566
GlaI	GCGC	2 cut(s)	371, 445
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	105
HhaI	GCGC	2 cut(s)	372, 446
Hin1II	CATG	2 cut(s)	104, 216
Hin6I	GCGC	2 cut(s)	370, 444
HinP1I	GCGC	2 cut(s)	370, 444
HinfI	GANTC	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	57, 222, 254
Hpy188III	TCNNGA	5 cut(s)	31, 464, 494, 539, 566
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	2 cut(s)	95, 114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 194, 443, 477
HpyF3I	CTNAG	3 cut(s)	48, 162, 221
Hsp92II	CATG	2 cut(s)	104, 216
HspAI	GCGC	2 cut(s)	370, 444
Kzo9I	GATC	3 cut(s)	52, 141, 535
LpnPI	CCDG	9 cut(s)	124, 131, 138, 158, 303, 380, 404, 524, 576
LweI	GCATC	2 cut(s)	104, 259
MaeI	CTAG	3 cut(s)	189, 209, 566
MalI	GATC	3 cut(s)	54, 143, 537
MboI	GATC	3 cut(s)	52, 141, 535
MboII	GAAGA	4 cut(s)	86, 182, 320, 413
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	199, 227
MluCI	AATT	4 cut(s)	311, 322, 344, 529
MnlI	CCTC	4 cut(s)	70, 157, 298, 535
MseI	TTAA	3 cut(s)	180, 237, 554
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	4 cut(s)	111, 194, 443, 477
NdeII	GATC	3 cut(s)	52, 141, 535
NlaIII	CATG	2 cut(s)	104, 216
NspI	RCATGY	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	83
PfoI	TCCNGGA	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	180
PsiI	TTATAA	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	3 cut(s)	180, 237, 554
Sau3AI	GATC	3 cut(s)	52, 141, 535
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	199, 227
SetI	ASST	3 cut(s)	81, 113, 157
SfaNI	GCATC	2 cut(s)	104, 259
SfcI	CTRYAG	1 cut(s)	112
Sse9I	AATT	4 cut(s)	311, 322, 344, 529
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	3 cut(s)	189, 209, 566
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	32, 339, 463
TasI	AATT	4 cut(s)	311, 322, 344, 529
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	180, 237, 554
Tru9I	TTAA	3 cut(s)	180, 237, 554
TscAI	CASTG	1 cut(s)	453
TspDTI	ATGAA	3 cut(s)	17, 325, 375
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	453
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	2 cut(s)	311, 344
XbaI	TCTAGA	1 cut(s)	565
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	3 cut(s)	189, 209, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.