Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008773

Physical Location & Seq

Genomic Coordinates Reverse (-)

25409167 .. 25412565

Gene Structure 3399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23190.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCATCGAGGAAGAAGCAATCCGACGCCATAGCTCTCCTGCTGTCCAACTACAACGACGAGGAAGAGGACGAAGATATGGAGGACGTTGAGCAACAAAACGACATAGAAGAAGAACTTGAAGGGGATGAAGAGCGACAAGAACGGAGAGAATACGACGATTACGGTGAGCTGAGAAGAGGCTCGGGAGATGCTGCAATGGCGGATGTGGATGGAACAGTGGCTGGTGAGTCTGGGAACGACGATGGCGCACCGCCGAATGCCGGGGATAATGAGGCGCCTTCGGATGGTTTGAATAGGAGAAGAAGAAGAGGGGCGTTTACGATTGTGGACTATGGACGTGATGAAGTTGCTATGTCTCCTGAGACTGAGGAGGGTGAAATAGAAGGAAGTCGTCGTGTTCCTGGTGATTTCCATGATAAGACACCTCCAGGAACAGTTCGCACTCCTCAATTATCTGAACCGTCAAACTCTGACACAATGAACGAAACTGTACTTGAATCAGAGGGTAGAGATGCCGCAGAAGCTGTTGCAGAAGAGCCAAAGGATATTGATCCATTAGATAAGTTTCTCCCGCCACCATTAAAAGCGAAGTGTTCGGAGGAGCTGCAAAGGAAGATAAATAAGTTTCTTGAATACAAGAGAGCCGGGAAAAGCTTCAATGCAGAAGTGCGTAATAAGAAGGACTATCGGAATCCAAACTTTCTAGTGCATGCAGTGAGGTATCAAGATATTGATCAGATAGGGTCTTGCTTCAGTAAAGATGTATTTGACCCTCATGGATATGACAAAAGTGACTACTGTGATGAAATAGAGGCTGATATGAGGCGCGAAATGGAAAGGAAAGAGCAAGAAAGGAAGAGGAGTCAAAAGGTTGAATATGTTTCAGGAGGAACACAGCCTGGAATAGTTGGTGCTGCACCTAAAATTAACGTACCTTTTACAGGTGTTTCAACCATGGCTGCTACTGGGTTGAACTCCTTACCTCCTGCAGCTGATGCCATCCCTCGGGAGGGTAGACAGAATAAGAAGTCAAAATGGGATAAGGTAGATGGTGATCGAAAAAATCCTCTTCCCTCGGGATTGCAGGATTCTATGTCTACTGTGGGGACTCATGCATCACTCCTATCTTCTGCTAGTGCTGGTGCTGGATACATGGCTTTTGCGCAGCAGAGACGGCGAGAGGTGGAGGAGAAACGATCTAGTGAAAGGAAGTTAGACAGAAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCNGP

Protein Analysis

411

Amino Acids

45.71

Weight (kDa)

4.8

Isoelectric Point (pI)

67.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29220 AT1G29220
fragaria_vesca	FvH4_3g07540 FvH4_3g07540 FvH4_3g37800 FvH4_3g37800
malus_domestica	MD05G1298600.v1.1 MD10G1277900.v1.1
prunus_persica	Prupe.4G063800_v2.0.a1
pyrus_communis	pycom05g27640 pycom10g23190
rosa_chinensis	RchiOBHm_Chr5g0011231
rosa_laevigata	RLG00000031820
rosa_multiflora	Rmu_sc0002990.1_g000005 Rmu_sc0035380.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065170
rosa_rugosa	Rorug04G0455900 Rorug04G0456000
rosa_samantha	Rh5AG087900 Rh5BG082700 Rh5CG095700 Rh5DG082600
rosa_wichuraiana	Rw5G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1167
AccB1I	GGYRCC	1 cut(s)	277
AccI	GTMKAC	2 cut(s)	1018, 1100
AccII	CGCG	1 cut(s)	831
AciI	CCGC	4 cut(s)	203, 254, 519, 575
AclWI	GGATC	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	739
AcyI	GRCGYC	2 cut(s)	27, 278
AfaI	GTAC	2 cut(s)	495, 936
AfiI	CCNNNNNNNGG	6 cut(s)	263, 287, 944, 1008, 1012, 1013
AgsI	TTSAA	8 cut(s)	122, 295, 500, 635, 661, 878, 954, 976
AjiI	CACGTC	1 cut(s)	341
AjnI	CCWGG	3 cut(s)	403, 430, 901
AluBI	AGCT	6 cut(s)	35, 172, 527, 607, 657, 995
AluI	AGCT	6 cut(s)	35, 172, 527, 607, 657, 995
Alw26I	GTCTC	3 cut(s)	359, 363, 1168
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	2 cut(s)	224, 527
Ama87I	CYCGRG	3 cut(s)	184, 1008, 1078
ApeKI	GCWGC	6 cut(s)	194, 607, 917, 962, 992, 1168
Asp700I	GAANNNNTTC	1 cut(s)	656
AspLEI	GCGC	4 cut(s)	251, 280, 831, 1168
AsuC2I	CCSGG	2 cut(s)	265, 649
AsuHPI	GGTGA	5 cut(s)	179, 239, 389, 419, 1067
AvaI	CYCGRG	3 cut(s)	184, 1008, 1078
BanI	GGYRCC	1 cut(s)	277
BbvI	GCAGC	6 cut(s)	181, 594, 904, 949, 1004, 1180
BccI	CCATC	5 cut(s)	206, 239, 281, 1010, 1046
BceAI	ACGGC	1 cut(s)	1193
BciT130I	CCWGG	3 cut(s)	405, 432, 903
BciVI	GTATCC	1 cut(s)	1145
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	2 cut(s)	265, 649
BcoDI	GTCTC	3 cut(s)	359, 363, 1168
BfaI	CTAG	3 cut(s)	707, 1137, 1203
BfmI	CTRYAG	1 cut(s)	990
BfoI	RGCGCY	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	1145
BglII	AGATCT	1 cut(s)	1226
BisI	GCNGC	7 cut(s)	195, 519, 608, 918, 963, 993, 1169
BlsI	GCNGC	7 cut(s)	196, 520, 609, 919, 964, 994, 1170
Bme1390I	CCNGG	5 cut(s)	265, 405, 432, 649, 903
BmeT110I	CYCGRG	3 cut(s)	184, 1008, 1078
BmgBI	CACGTC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	5 cut(s)	265, 405, 432, 649, 903
BmrI	ACTGGG	1 cut(s)	978
BmsI	GCATC	5 cut(s)	14, 181, 505, 988, 1127
BmuI	ACTGGG	1 cut(s)	978
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	2 cut(s)	265, 649
BsaBI	GATNNNNATC	3 cut(s)	552, 735, 1056
BsaHI	GRCGYC	2 cut(s)	27, 278
BsaJI	CCNNGG	4 cut(s)	264, 957, 1007, 1077
Bsc4I	CCNNNNNNNGG	6 cut(s)	263, 287, 944, 1008, 1012, 1013
Bse1I	ACTGG	1 cut(s)	973
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	3 cut(s)	552, 735, 1056
BseBI	CCWGG	3 cut(s)	405, 432, 903
BseDI	CCNNGG	4 cut(s)	264, 957, 1007, 1077
BseGI	GGATG	5 cut(s)	133, 211, 217, 292, 1002
BseJI	GATNNNNATC	3 cut(s)	552, 735, 1056
BseLI	CCNNNNNNNGG	6 cut(s)	263, 287, 944, 1008, 1012, 1013
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	164, 354, 360
BseNI	ACTGG	1 cut(s)	973
BseRI	GAGGAG	5 cut(s)	386, 438, 617, 877, 1205
BseXI	GCAGC	6 cut(s)	181, 594, 904, 949, 1004, 1180
BsgI	GTGCAG	1 cut(s)	903
Bsh1236I	CGCG	1 cut(s)	831
BshNI	GGYRCC	1 cut(s)	277
BsiHKCI	CYCGRG	3 cut(s)	184, 1008, 1078
BsiSI	CCGG	2 cut(s)	264, 648
BslFI	GGGAC	1 cut(s)	1123
BslI	CCNNNNNNNGG	6 cut(s)	263, 287, 944, 1008, 1012, 1013
BsmAI	GTCTC	3 cut(s)	359, 363, 1168
BsmBI	CGTCTC	1 cut(s)	1168
BsmFI	GGGAC	1 cut(s)	1123
BsmI	GAATGC	1 cut(s)	265
BsoBI	CYCGRG	3 cut(s)	184, 1008, 1078
Bsp143I	GATC	5 cut(s)	553, 736, 1057, 1199, 1226
Bsp19I	CCATGG	1 cut(s)	957
BspACI	CCGC	4 cut(s)	203, 254, 519, 575
BspCNI	CTCAG	3 cut(s)	165, 355, 361
BspFNI	CGCG	1 cut(s)	831
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	994
BspPI	GGATC	1 cut(s)	548
BspQI	GCTCTTC	2 cut(s)	126, 531
BspT107I	GGYRCC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	973
BssECI	CCNNGG	4 cut(s)	264, 957, 1007, 1077
BssMI	GATC	5 cut(s)	553, 736, 1057, 1199, 1226
BssNI	GRCGYC	2 cut(s)	27, 278
BssT1I	CCWWGG	1 cut(s)	957
Bst2UI	CCWGG	3 cut(s)	405, 432, 903
Bst4CI	ACNGT	7 cut(s)	167, 220, 439, 465, 493, 803, 1105
Bst6I	CTCTTC	7 cut(s)	60, 126, 172, 304, 531, 854, 1077
BstACI	GRCGYC	2 cut(s)	27, 278
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	3 cut(s)	173, 363, 369
BstDSI	CCRYGG	1 cut(s)	957
BstENI	CCTNNNNNAGG	1 cut(s)	942
BstF5I	GGATG	5 cut(s)	133, 211, 217, 292, 1002
BstFNI	CGCG	1 cut(s)	831
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	4 cut(s)	251, 280, 831, 1168
BstKTI	GATC	5 cut(s)	556, 739, 1060, 1202, 1229
BstMAI	GTCTC	3 cut(s)	359, 363, 1168
BstMBI	GATC	5 cut(s)	553, 736, 1057, 1199, 1226
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 524, 998, 1177
BstNI	CCWGG	3 cut(s)	405, 432, 903
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	5 cut(s)	263, 403, 430, 647, 901
BstSFI	CTRYAG	1 cut(s)	990
BstUI	CGCG	1 cut(s)	831
BstV1I	GCAGC	6 cut(s)	181, 594, 904, 949, 1004, 1180
BstX2I	RGATCY	1 cut(s)	1226
BstYI	RGATCY	1 cut(s)	1226
BsuI	GTATCC	1 cut(s)	1145
BtgI	CCRYGG	1 cut(s)	957
BtrI	CACGTC	1 cut(s)	341
BtsCI	GGATG	5 cut(s)	133, 211, 217, 292, 1002
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	2 cut(s)	225, 723
Cac8I	GCNNGC	1 cut(s)	714
CaiI	CAGNNNCTG	2 cut(s)	224, 527
CfoI	GCGC	4 cut(s)	251, 280, 831, 1168
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	494, 935
CviAII	CATG	6 cut(s)	416, 713, 779, 958, 1115, 1156
CviQI	GTAC	2 cut(s)	494, 935
DdeI	CTNAG	3 cut(s)	173, 363, 369
DinI	GGCGCC	1 cut(s)	279
DpnI	GATC	5 cut(s)	555, 738, 1059, 1201, 1228
DpnII	GATC	5 cut(s)	553, 736, 1057, 1199, 1226
Eam1104I	CTCTTC	7 cut(s)	60, 126, 172, 304, 531, 854, 1077
EarI	CTCTTC	7 cut(s)	60, 126, 172, 304, 531, 854, 1077
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	957
Eco57I	CTGAAG	1 cut(s)	739
Eco88I	CYCGRG	3 cut(s)	184, 1008, 1078
EcoNI	CCTNNNNNAGG	1 cut(s)	942
EcoRII	CCWGG	3 cut(s)	403, 430, 901
EcoT14I	CCWWGG	1 cut(s)	957
EcoT22I	ATGCAT	1 cut(s)	1120
EgeI	GGCGCC	1 cut(s)	279
EheI	GGCGCC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	957
Esp3I	CGTCTC	1 cut(s)	1168
FaeI	CATG	6 cut(s)	419, 716, 782, 961, 1118, 1159
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	1123
FatI	CATG	6 cut(s)	415, 712, 778, 957, 1114, 1155
FauI	CCCGC	1 cut(s)	582
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	2 cut(s)	1018, 1100
Fnu4HI	GCNGC	7 cut(s)	195, 519, 608, 918, 963, 993, 1169
FokI	GGATG	5 cut(s)	140, 218, 224, 299, 989
Fsp4HI	GCNGC	7 cut(s)	195, 519, 608, 918, 963, 993, 1169
FspBI	CTAG	3 cut(s)	707, 1137, 1203
FspI	TGCGCA	1 cut(s)	1167
GlaI	GCGC	4 cut(s)	250, 279, 830, 1167
GluI	GCNGC	7 cut(s)	195, 519, 608, 918, 963, 993, 1169
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	281
HapII	CCGG	2 cut(s)	264, 648
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	4 cut(s)	251, 280, 831, 1168
Hin1I	GRCGYC	2 cut(s)	27, 278
Hin1II	CATG	6 cut(s)	419, 716, 782, 961, 1118, 1159
Hin6I	GCGC	4 cut(s)	249, 278, 829, 1166
HinP1I	GCGC	4 cut(s)	249, 278, 829, 1166
HindIII	AAGCTT	1 cut(s)	655
HinfI	GANTC	6 cut(s)	230, 500, 694, 865, 1091, 1111
HpaII	CCGG	2 cut(s)	264, 648
HphI	GGTGA	5 cut(s)	179, 239, 389, 419, 1067
Hpy166II	GTNNAC	4 cut(s)	321, 331, 1019, 1101
Hpy188I	TCNGA	8 cut(s)	25, 286, 460, 475, 505, 601, 693, 741
Hpy188III	TCNNGA	8 cut(s)	186, 362, 632, 728, 888, 1010, 1080, 1230
Hpy8I	GTNNAC	4 cut(s)	321, 331, 1019, 1101
Hpy99I	CGWCG	5 cut(s)	29, 62, 161, 245, 399
HpyAV	CCTTC	4 cut(s)	116, 291, 380, 676
HpyCH4III	ACNGT	7 cut(s)	167, 220, 439, 465, 493, 803, 1105
HpyCH4IV	ACGT	3 cut(s)	87, 340, 933
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 524, 998, 1177
HpyF3I	CTNAG	3 cut(s)	173, 363, 369
HpySE526I	ACGT	3 cut(s)	87, 340, 933
Hsp92I	GRCGYC	2 cut(s)	27, 278
Hsp92II	CATG	6 cut(s)	419, 716, 782, 961, 1118, 1159
HspAI	GCGC	4 cut(s)	249, 278, 829, 1166
KasI	GGCGCC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	553, 736, 1057, 1199, 1226
LguI	GCTCTTC	2 cut(s)	126, 531
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	6 cut(s)	181, 594, 904, 949, 1004, 1180
LweI	GCATC	5 cut(s)	14, 181, 505, 988, 1127
MaeI	CTAG	3 cut(s)	707, 1137, 1203
MaeII	ACGT	3 cut(s)	87, 340, 933
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	5 cut(s)	555, 738, 1059, 1201, 1228
MboI	GATC	5 cut(s)	553, 736, 1057, 1199, 1226
MflI	RGATCY	1 cut(s)	1226
MluCI	AATT	2 cut(s)	452, 927
Mly113I	GGCGCC	1 cut(s)	278
MlyI	GAGTC	3 cut(s)	239, 874, 1105
MmeI	TCCRAC	2 cut(s)	48, 72
Mph1103I	ATGCAT	1 cut(s)	1120
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	2 cut(s)	584, 930
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	995
MspI	CCGG	2 cut(s)	264, 648
MspR9I	CCNGG	5 cut(s)	265, 405, 432, 649, 903
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	3 cut(s)	405, 432, 903
MvnI	CGCG	1 cut(s)	831
MwoI	GCNNNNNNNGC	4 cut(s)	200, 524, 998, 1177
NarI	GGCGCC	1 cut(s)	278
NciI	CCSGG	2 cut(s)	265, 649
NcoI	CCATGG	1 cut(s)	957
NdeII	GATC	5 cut(s)	553, 736, 1057, 1199, 1226
NlaIII	CATG	6 cut(s)	419, 716, 782, 961, 1118, 1159
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	794
NsbI	TGCGCA	1 cut(s)	1167
NsiI	ATGCAT	1 cut(s)	1120
NspI	RCATGY	1 cut(s)	716
PaeI	GCATGC	1 cut(s)	716
PciSI	GCTCTTC	2 cut(s)	126, 531
PctI	GAATGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	500, 694, 1091
PfoI	TCCNGGA	1 cut(s)	430
PkrI	GCNGC	7 cut(s)	196, 520, 609, 919, 964, 994, 1170
PleI	GAGTC	3 cut(s)	238, 873, 1105
PluTI	GGCGCC	1 cut(s)	281
PpsI	GAGTC	3 cut(s)	238, 873, 1105
Psp6I	CCWGG	3 cut(s)	403, 430, 901
PspGI	CCWGG	3 cut(s)	403, 430, 901
PspN4I	GGNNCC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	994
PstNI	CAGNNNCTG	2 cut(s)	224, 527
PsuI	RGATCY	1 cut(s)	1226
PvuII	CAGCTG	1 cut(s)	995
RsaI	GTAC	2 cut(s)	495, 936
RsaNI	GTAC	2 cut(s)	494, 935
RseI	CAYNNNNRTG	1 cut(s)	783
SapI	GCTCTTC	2 cut(s)	126, 531
SaqAI	TTAA	2 cut(s)	584, 930
SatI	GCNGC	7 cut(s)	195, 519, 608, 918, 963, 993, 1169
Sau3AI	GATC	5 cut(s)	553, 736, 1057, 1199, 1226
SchI	GAGTC	3 cut(s)	239, 874, 1105
ScrFI	CCNGG	5 cut(s)	265, 405, 432, 649, 903
SfaNI	GCATC	5 cut(s)	14, 181, 505, 988, 1127
SfcI	CTRYAG	1 cut(s)	990
SfoI	GGCGCC	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	783
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	2 cut(s)	452, 927
SsiI	CCGC	4 cut(s)	203, 254, 519, 575
SspDI	GGCGCC	1 cut(s)	277
SspMI	CTAG	3 cut(s)	707, 1137, 1203
StyD4I	CCNGG	5 cut(s)	263, 403, 430, 647, 901
StyI	CCWWGG	1 cut(s)	957
TaaI	ACNGT	7 cut(s)	167, 220, 439, 465, 493, 803, 1105
TaiI	ACGT	3 cut(s)	90, 343, 936
TaqI	TCGA	2 cut(s)	8, 1060
TasI	AATT	2 cut(s)	452, 927
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	3 cut(s)	500, 694, 1091
Tru1I	TTAA	2 cut(s)	584, 930
Tru9I	TTAA	2 cut(s)	584, 930
TscAI	CASTG	2 cut(s)	225, 723
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	6 cut(s)	194, 607, 917, 962, 992, 1168
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	4 cut(s)	144, 360, 497, 822
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	225, 723
XagI	CCTNNNNNAGG	1 cut(s)	942
XceI	RCATGY	1 cut(s)	716
XmiI	GTMKAC	2 cut(s)	1018, 1100
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	3 cut(s)	707, 1137, 1203
Zsp2I	ATGCAT	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.