Rh5AG087900

HCNGP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008773
Physical Location & Seq
Forward (+)
7786788 .. 7791837
5050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG087900.1

Sequence Viewer

Length: 1224 bp
ATGGCCTCGAGAAAGCGGCAATTCGAGGGCATCGCGATGCTGTCGATGTACAACGACGAGGAAGAAGAAGAAGAAGAAGAGGAAGAGGACGAAGACATGGACGACGCTGAAGAACGTGGCGAACAAGAAGAGCGCGGCGGAGAGAGAGAAGACGGAGAACGGCGGGAACACGGCGGCGATGCGTCCATGTTGGATGTCGATGCGACGGCGGCCGTTGATTCTGGTAACGATGACAATGCAACGAGCGGTGTGGATGATGAGAACTCGGCGCGGAGTGAAGGGCAGTTTCGTCGTTCTTCGTCGCAACAGCAGCTCTCTCAGGCGACGGGATCGCCGCAGCAAGTGGCGCCGGGGAAGTTGAGTAGGAGAGGGACGCTTGTGGACTATGGCCATGATGAAGTTGCTATGTCTCCAGAGCCTGAGGAGGGTGAAATTGATGGAGGTGGTCGAATTTTGTCTACCAATGGTGATTCACATGATAAGACACCTCAGTTAAGCAATCAAGTAACTCCTCAAATATCTGAGCCGTCACAATCTGAAACACTGAATGAGACTATACTTGAATCAGAGGGTAGAAATGCTACAGAGCCTGTTGCAGAAGATCAAAAAAATGTTGATCCATTAGATAAGTTTCTTCCACCGCCATTAAAGCTCAAGTGCTCAGAGGAGCTGCAAAGAAAGATTCAAAAGTTTCTTGAATTAAAGAGAGCTGGGAAAAGCTTCAATGAAGAAGTGCGGAAAAAGAAGGACTATAGGAATCCAGACTTTCTATTGCATGCAGTGCGGTATCAAGATATTGATCAGATAGGTTCATGCTTCAGTAAAGATGTATTTGACCCTCATGGATTTGACAAAAGCGACTACTATGATGAAATAGAGGCTGATTCGAGGCGTGAAATGGAAAGGGTTAATCAAGAAAAAAAGAACCGTCAGAATCTTGAATTTGTTTCCGGTGGAAGACAATCTACAATAGTTGGTGCTGCACCTAAACTTAATGTACCTCTTCCAGGTATAACTTCTGGGTTGAGTTCCTTACCGCCTGCTGCTGATATCATCCCTCGGGACGGTAGACAGAATAAGAAGTCGAAGTGGGATAAGATTGATGGGACTCATGCAACACTCTTATCTTCTGCTAATGCTGGTGGATACACTTTGGGGCAGCAGAAACGGAGAGATGTGGAGGAGAAGAGATCTAGTGAAAGGAAGTTAGACAGAAGATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCNGP

Protein Analysis

407

Amino Acids

45.49

Weight (kDa)

4.73

Isoelectric Point (pI)

67.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCNGP PF07818 212 - 304 3.4e-29 HCNGP-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AccBSI CCGCTC 1 cut(s) 246
AccI GTMKAC 2 cut(s) 458, 1069
AccII CGCG 3 cut(s) 35, 135, 271
AclWI GGATC 2 cut(s) 337, 611
AcoI YGGCCR 2 cut(s) 210, 388
AcsI RAATTY 2 cut(s) 450, 941
AcuI CTGAAG 2 cut(s) 129, 802
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 2 cut(s) 50, 999
AfiI CCNNNNNNNGG 3 cut(s) 425, 1007, 1064
AgsI TTSAA 5 cut(s) 563, 686, 698, 724, 941
AjnI CCWGG 1 cut(s) 1006
AluBI AGCT 5 cut(s) 313, 652, 670, 710, 720
AluI AGCT 5 cut(s) 313, 652, 670, 710, 720
Alw21I GWGCWC 1 cut(s) 662
Alw26I GTCTC 2 cut(s) 414, 545
AlwI GGATC 2 cut(s) 337, 611
AlwNI CAGNNNCTG 2 cut(s) 419, 590
Ama87I CYCGRG 2 cut(s) 7, 1059
AoxI GGCC 3 cut(s) 3, 210, 388
ApeKI GCWGC 6 cut(s) 310, 337, 670, 980, 1043, 1159
ApoI RAATTY 2 cut(s) 450, 941
Asp700I GAANNNNTTC 1 cut(s) 719
AspLEI GCGC 3 cut(s) 135, 271, 349
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 440, 479
AvaI CYCGRG 2 cut(s) 7, 1059
AxyI CCTNAGG 1 cut(s) 420
BalI TGGCCA 1 cut(s) 390
BanI GGYRCC 1 cut(s) 346
BarI GAAGNNNNNNTAC 2 cut(s) 949, 981
BbsI GAAGAC 3 cut(s) 99, 156, 964
Bbv12I GWGCWC 1 cut(s) 662
BbvI GCAGC 6 cut(s) 322, 349, 657, 967, 1030, 1171
BccI CCATC 2 cut(s) 431, 1097
BceAI ACGGC 5 cut(s) 176, 187, 197, 222, 511
BcgI CGANNNNNNTGC 4 cut(s) 218, 252, 272, 306
BciT130I CCWGG 1 cut(s) 1008
BciVI GTATCC 1 cut(s) 1139
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 414, 545
BfaI CTAG 1 cut(s) 1194
BfmI CTRYAG 2 cut(s) 582, 751
BfoI RGCGCY 1 cut(s) 350
BfuI GTATCC 1 cut(s) 1139
BglII AGATCT 1 cut(s) 1190
Bme1390I CCNGG 2 cut(s) 351, 1008
BmeT110I CYCGRG 2 cut(s) 7, 1059
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 351, 1008
BmsI GCATC 4 cut(s) 27, 39, 169, 190
BpiI GAAGAC 3 cut(s) 99, 156, 964
BpmI CTGGAG 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 798
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 350, 1058
BsaWI WCCGGW 1 cut(s) 950
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 1007, 1064
Bse21I CCTNAGG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 1 cut(s) 1008
BseDI CCNNGG 2 cut(s) 350, 1058
BseGI GGATG 3 cut(s) 199, 259, 1053
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 3 cut(s) 425, 1007, 1064
BseMII CTCAG 5 cut(s) 332, 411, 503, 513, 675
BseRI GAGGAG 4 cut(s) 437, 501, 680, 1196
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 6 cut(s) 322, 349, 657, 967, 1030, 1171
BseYI CCCAGC 1 cut(s) 710
BsgI GTGCAG 1 cut(s) 966
Bsh1236I CGCG 3 cut(s) 35, 135, 271
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 3 cut(s) 5, 212, 390
BshNI GGYRCC 1 cut(s) 346
BsiEI CGRYCG 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 662
BsiHKCI CYCGRG 2 cut(s) 7, 1059
BsiSI CCGG 2 cut(s) 350, 951
BslFI GGGAC 3 cut(s) 385, 1076, 1120
BslI CCNNNNNNNGG 3 cut(s) 425, 1007, 1064
BsmAI GTCTC 2 cut(s) 414, 545
BsmFI GGGAC 3 cut(s) 385, 1076, 1120
BsnI GGCC 3 cut(s) 5, 212, 390
BsoBI CYCGRG 2 cut(s) 7, 1059
Bsp1286I GDGCHC 1 cut(s) 662
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 6 cut(s) 329, 601, 616, 799, 1190, 1217
Bsp68I TCGCGA 1 cut(s) 35
BspANI GGCC 3 cut(s) 5, 212, 390
BspCNI CTCAG 5 cut(s) 331, 412, 502, 514, 674
BspFNI CGCG 3 cut(s) 35, 135, 271
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 2 cut(s) 337, 611
BspQI GCTCTTC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 246
BsrGI TGTACA 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 350, 1058
BssMI GATC 6 cut(s) 329, 601, 616, 799, 1190, 1217
BssNI GRCGYC 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 2 cut(s) 929, 1067
Bst6I CTCTTC 5 cut(s) 72, 78, 123, 1008, 1181
BstACI GRCGYC 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 781
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 777, 1041
BstDEI CTNAG 5 cut(s) 318, 420, 489, 522, 661
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 3 cut(s) 199, 259, 1053
BstFNI CGCG 3 cut(s) 35, 135, 271
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 3 cut(s) 135, 271, 349
BstKTI GATC 6 cut(s) 332, 604, 619, 802, 1193, 1220
BstMAI GTCTC 2 cut(s) 414, 545
BstMBI GATC 6 cut(s) 329, 601, 616, 799, 1190, 1217
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 5 cut(s) 209, 310, 346, 649, 781
BstNI CCWGG 1 cut(s) 1008
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 2 cut(s) 349, 1006
BstSFI CTRYAG 2 cut(s) 582, 751
BstUI CGCG 3 cut(s) 35, 135, 271
BstV1I GCAGC 6 cut(s) 322, 349, 657, 967, 1030, 1171
BstV2I GAAGAC 3 cut(s) 99, 156, 964
BstX2I RGATCY 1 cut(s) 1190
BstYI RGATCY 1 cut(s) 1190
BstZI CGGCCG 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 420
BsuI GTATCC 1 cut(s) 1139
BsuRI GGCC 3 cut(s) 5, 212, 390
BtgZI GCGATG 3 cut(s) 16, 50, 192
BtsCI GGATG 3 cut(s) 199, 259, 1053
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 2 cut(s) 542, 786
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 2 cut(s) 777, 1041
CaiI CAGNNNCTG 2 cut(s) 419, 590
CfoI GCGC 3 cut(s) 135, 271, 349
CseI GACGC 3 cut(s) 113, 171, 382
Csp6I GTAC 2 cut(s) 49, 998
CviAII CATG 8 cut(s) 97, 187, 392, 476, 776, 813, 842, 1112
CviQI GTAC 2 cut(s) 49, 998
DdeI CTNAG 5 cut(s) 318, 420, 489, 522, 661
DinI GGCGCC 1 cut(s) 348
DpnI GATC 6 cut(s) 331, 603, 618, 801, 1192, 1219
DpnII GATC 6 cut(s) 329, 601, 616, 799, 1190, 1217
EaeI YGGCCR 2 cut(s) 210, 388
EagI CGGCCG 1 cut(s) 210
Eam1104I CTCTTC 5 cut(s) 72, 78, 123, 1008, 1181
EarI CTCTTC 5 cut(s) 72, 78, 123, 1008, 1181
EciI GGCGGA 1 cut(s) 153
EclXI CGGCCG 1 cut(s) 210
Eco32I GATATC 1 cut(s) 1051
Eco52I CGGCCG 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 129, 802
Eco81I CCTNAGG 1 cut(s) 420
Eco88I CYCGRG 2 cut(s) 7, 1059
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoRII CCWGG 1 cut(s) 1006
EcoRV GATATC 1 cut(s) 1051
EgeI GGCGCC 1 cut(s) 348
EheI GGCGCC 1 cut(s) 348
FaeI CATG 8 cut(s) 100, 190, 395, 479, 779, 816, 845, 1115
FaqI GGGAC 3 cut(s) 385, 1076, 1120
FatI CATG 8 cut(s) 96, 186, 391, 475, 775, 812, 841, 1111
FauI CCCGC 1 cut(s) 156
FbaI TGATCA 1 cut(s) 799
FblI GTMKAC 2 cut(s) 458, 1069
FokI GGATG 3 cut(s) 206, 266, 1040
FspBI CTAG 1 cut(s) 1194
GlaI GCGC 3 cut(s) 134, 270, 348
GsaI CCCAGC 1 cut(s) 714
GsuI CTGGAG 1 cut(s) 396
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 3 cut(s) 5, 212, 390
HapII CCGG 2 cut(s) 350, 951
HgaI GACGC 3 cut(s) 113, 171, 382
HhaI GCGC 3 cut(s) 135, 271, 349
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 8 cut(s) 100, 190, 395, 479, 779, 816, 845, 1115
Hin6I GCGC 3 cut(s) 133, 269, 347
HinP1I GCGC 3 cut(s) 133, 269, 347
HindIII AAGCTT 1 cut(s) 718
HinfI GANTC 8 cut(s) 218, 470, 563, 682, 757, 884, 934, 1108
HpaII CCGG 2 cut(s) 350, 951
HphI GGTGA 2 cut(s) 440, 479
Hpy166II GTNNAC 3 cut(s) 382, 459, 1070
Hpy188I TCNGA 6 cut(s) 523, 538, 568, 664, 804, 933
Hpy8I GTNNAC 3 cut(s) 382, 459, 1070
Hpy99I CGWCG 6 cut(s) 59, 107, 208, 294, 304, 328
HpyAV CCTTC 2 cut(s) 272, 739
HpyCH4III ACNGT 2 cut(s) 929, 1067
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 7 cut(s) 239, 596, 673, 775, 779, 983, 1115
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 310, 346, 649, 781
HpyF3I CTNAG 5 cut(s) 318, 420, 489, 522, 661
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 8 cut(s) 100, 190, 395, 479, 779, 816, 845, 1115
HspAI GCGC 3 cut(s) 133, 269, 347
KasI GGCGCC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 6 cut(s) 329, 601, 616, 799, 1190, 1217
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 6 cut(s) 322, 349, 657, 967, 1030, 1171
LweI GCATC 4 cut(s) 27, 39, 169, 190
MaeI CTAG 1 cut(s) 1194
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 3 cut(s) 224, 505, 528
MalI GATC 6 cut(s) 331, 603, 618, 801, 1192, 1219
MbiI CCGCTC 1 cut(s) 246
MboI GATC 6 cut(s) 329, 601, 616, 799, 1190, 1217
MflI RGATCY 1 cut(s) 1190
MhlI GDGCHC 1 cut(s) 662
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 5 cut(s) 20, 432, 450, 698, 941
MluNI TGGCCA 1 cut(s) 390
Mly113I GGCGCC 1 cut(s) 347
MlyI GAGTC 1 cut(s) 1102
MmeI TCCRAC 1 cut(s) 171
Mox20I TGGCCA 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 719
MscI TGGCCA 1 cut(s) 390
MseI TTAA 5 cut(s) 494, 647, 701, 909, 993
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 390
MspI CCGG 2 cut(s) 350, 951
MspR9I CCNGG 2 cut(s) 351, 1008
MvaI CCWGG 1 cut(s) 1008
MvnI CGCG 3 cut(s) 35, 135, 271
MwoI GCNNNNNNNGC 5 cut(s) 209, 310, 346, 649, 781
NarI GGCGCC 1 cut(s) 347
NciI CCSGG 1 cut(s) 351
NdeII GATC 6 cut(s) 329, 601, 616, 799, 1190, 1217
NlaIII CATG 8 cut(s) 100, 190, 395, 479, 779, 816, 845, 1115
NlaIV GGNNCC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 528
NruI TCGCGA 1 cut(s) 35
NspI RCATGY 1 cut(s) 779
PaeI GCATGC 1 cut(s) 779
PaeR7I CTCGAG 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 7 cut(s) 218, 470, 563, 682, 757, 884, 934
PleI GAGTC 1 cut(s) 1102
PluTI GGCGCC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 1102
Psp6I CCWGG 1 cut(s) 1006
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 1 cut(s) 348
PstNI CAGNNNCTG 2 cut(s) 419, 590
PsuI RGATCY 1 cut(s) 1190
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 2 cut(s) 50, 999
RsaNI GTAC 2 cut(s) 49, 998
RseI CAYNNNNRTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 5 cut(s) 494, 647, 701, 909, 993
Sau3AI GATC 6 cut(s) 329, 601, 616, 799, 1190, 1217
SchI GAGTC 1 cut(s) 1102
ScrFI CCNGG 2 cut(s) 351, 1008
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 4 cut(s) 27, 39, 169, 190
SfcI CTRYAG 2 cut(s) 582, 751
SfoI GGCGCC 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 7, 653
SmoI CTYRAG 2 cut(s) 7, 653
SphI GCATGC 1 cut(s) 779
Sse9I AATT 5 cut(s) 20, 432, 450, 698, 941
SspDI GGCGCC 1 cut(s) 346
SspMI CTAG 1 cut(s) 1194
StyD4I CCNGG 2 cut(s) 349, 1006
TaaI ACNGT 2 cut(s) 929, 1067
TaiI ACGT 1 cut(s) 118
TaqI TCGA 7 cut(s) 8, 24, 44, 198, 448, 887, 1085
TasI AATT 5 cut(s) 20, 432, 450, 698, 941
TatI WGTACW 1 cut(s) 48
TauI GCSGC 5 cut(s) 19, 138, 177, 212, 337
TfiI GAWTC 7 cut(s) 218, 470, 563, 682, 757, 884, 934
Tru1I TTAA 5 cut(s) 494, 647, 701, 909, 993
Tru9I TTAA 5 cut(s) 494, 647, 701, 909, 993
TscAI CASTG 2 cut(s) 549, 786
TseFI GTSAC 1 cut(s) 528
TseI GCWGC 6 cut(s) 310, 337, 670, 980, 1043, 1159
Tsp45I GTSAC 1 cut(s) 528
TspDTI ATGAA 4 cut(s) 411, 741, 801, 885
TspGWI ACGGA 2 cut(s) 168, 1183
TspRI CASTG 2 cut(s) 549, 786
XagI CCTNNNNNAGG 1 cut(s) 1005
XapI RAATTY 2 cut(s) 450, 941
XceI RCATGY 1 cut(s) 779
XhoI CTCGAG 1 cut(s) 7
XmiI GTMKAC 2 cut(s) 458, 1069
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 1 cut(s) 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.