Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035380.1

Orthogroup ID

OG0008773

Physical Location & Seq

Genomic Coordinates Reverse (-)

642 .. 4061

Gene Structure 3420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035380.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ctgaatgagactatacttgaatcagagggtagaaatgctacagaggctgttgcagaagatcaaaaaaatgttgatccattagataagtttcttccaccgccattaaagctcaagtgctcagaggagctgcaaagaaagattcaaaagtttcttgaattaaagagagctgggaaaagcttcaatgaagaagtgcggaaaaagaaggactataggaatccagactttctattgcatgcagtgcggtatcaagatattgatcagataggttcatgcttcagtaaagatgtatttgaccctcatggatttgacaaaagcgactactatgatgaaatagaggctgattcgaggcgtgaaatggaaagggttaatcaagaaaaaaagaaccgtcagaatcttgaatttgtttccggtggaagacaatctacaatagttggtgctgcacctaaacttaatgtacctcttccaggtataacttctgggttgagttccttaccgcctgctgctgatatcatccctcgggacggtagacagaataagaagtcgaagtgggataagattgatgggactcatgcaacactcttatcttctgctaatgctggtggatacactttggggcagcagaaacggagagatgtggaggagaagagatctagtgaaaggaagttagacagaagatcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCNGP

Protein Analysis

226

Amino Acids

25.72

Weight (kDa)

8.91

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29220 AT1G29220
fragaria_vesca	FvH4_3g07540 FvH4_3g07540 FvH4_3g37800 FvH4_3g37800
malus_domestica	MD05G1298600.v1.1 MD10G1277900.v1.1
prunus_persica	Prupe.4G063800_v2.0.a1
pyrus_communis	pycom05g27640 pycom10g23190
rosa_chinensis	RchiOBHm_Chr5g0011231
rosa_laevigata	RLG00000031820
rosa_multiflora	Rmu_sc0002990.1_g000005 Rmu_sc0035380.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065170
rosa_rugosa	Rorug04G0455900 Rorug04G0456000
rosa_samantha	Rh5AG087900 Rh5BG082700 Rh5CG095700 Rh5DG082600
rosa_wichuraiana	Rw5G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	526
AciI	CCGC	4 cut(s)	98, 193, 241, 494
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	464, 521
AgsI	TTSAA	5 cut(s)	20, 143, 155, 181, 398
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	4 cut(s)	109, 127, 167, 177
AluI	AGCT	4 cut(s)	109, 127, 167, 177
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	516
ApeKI	GCWGC	4 cut(s)	127, 437, 500, 616
ApoI	RAATTY	1 cut(s)	398
Asp700I	GAANNNNTTC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	516
BarI	GAAGNNNNNNTAC	2 cut(s)	406, 438
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	4 cut(s)	114, 424, 487, 628
BccI	CCATC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	465
BciVI	GTATCC	1 cut(s)	596
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	2 cut(s)	39, 208
BfuI	GTATCC	1 cut(s)	596
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	4 cut(s)	128, 438, 501, 617
BlsI	GCNGC	4 cut(s)	129, 439, 502, 618
Bme1390I	CCNGG	1 cut(s)	465
BmeT110I	CYCGRG	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 521
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	515
BseGI	GGATG	1 cut(s)	510
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	464, 521
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	137, 653
BseXI	GCAGC	4 cut(s)	114, 424, 487, 628
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	2 cut(s)	533, 577
BslI	CCNNNNNNNGG	2 cut(s)	464, 521
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	2 cut(s)	533, 577
BsoBI	CYCGRG	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	5 cut(s)	58, 73, 256, 647, 674
BspACI	CCGC	4 cut(s)	98, 193, 241, 494
BspCNI	CTCAG	1 cut(s)	131
BspPI	GGATC	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	5 cut(s)	58, 73, 256, 647, 674
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	386, 524
Bst6I	CTCTTC	2 cut(s)	465, 638
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	234, 498
BstDEI	CTNAG	1 cut(s)	118
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	510
BstKTI	GATC	5 cut(s)	61, 76, 259, 650, 677
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	5 cut(s)	58, 73, 256, 647, 674
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 106, 238
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	2 cut(s)	39, 208
BstV1I	GCAGC	4 cut(s)	114, 424, 487, 628
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuI	GTATCC	1 cut(s)	596
BtsCI	GGATG	1 cut(s)	510
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	234, 498
CaiI	CAGNNNCTG	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	4 cut(s)	233, 270, 299, 569
CviJI	RGCY	6 cut(s)	47, 109, 127, 167, 177, 338
CviKI_1	RGCY	6 cut(s)	47, 109, 127, 167, 177, 338
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	5 cut(s)	60, 75, 258, 649, 676
DpnII	GATC	5 cut(s)	58, 73, 256, 647, 674
Eam1104I	CTCTTC	2 cut(s)	465, 638
EarI	CTCTTC	2 cut(s)	465, 638
Eco32I	GATATC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	508
FaeI	CATG	4 cut(s)	236, 273, 302, 572
FaiI	YATR	8 cut(s)	14, 210, 234, 271, 300, 324, 470, 570
FaqI	GGGAC	2 cut(s)	533, 577
FatI	CATG	4 cut(s)	232, 269, 298, 568
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	4 cut(s)	128, 438, 501, 617
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	4 cut(s)	128, 438, 501, 617
FspBI	CTAG	1 cut(s)	651
GluI	GCNGC	4 cut(s)	128, 438, 501, 617
GsaI	CCCAGC	1 cut(s)	171
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	4 cut(s)	236, 273, 302, 572
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	6 cut(s)	20, 139, 214, 341, 391, 565
HpaII	CCGG	1 cut(s)	408
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	4 cut(s)	25, 121, 261, 390
Hpy188III	TCNNGA	7 cut(s)	152, 218, 248, 371, 395, 518, 678
Hpy8I	GTNNAC	1 cut(s)	527
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	2 cut(s)	386, 524
HpyCH4V	TGCA	6 cut(s)	53, 130, 232, 236, 440, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 106, 238
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	4 cut(s)	236, 273, 302, 572
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	58, 73, 256, 647, 674
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	8 cut(s)	153, 231, 421, 450, 462, 477, 510, 582
Lsp1109I	GCAGC	4 cut(s)	114, 424, 487, 628
MaeI	CTAG	1 cut(s)	651
MalI	GATC	5 cut(s)	60, 75, 258, 649, 676
MboI	GATC	5 cut(s)	58, 73, 256, 647, 674
MboII	GAAGA	7 cut(s)	68, 83, 197, 426, 452, 576, 655
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	2 cut(s)	155, 398
MlyI	GAGTC	1 cut(s)	559
MnlI	CCTC	9 cut(s)	19, 37, 115, 306, 328, 339, 468, 525, 631
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	4 cut(s)	104, 158, 366, 450
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	3 cut(s)	44, 106, 238
NdeII	GATC	5 cut(s)	58, 73, 256, 647, 674
NlaIII	CATG	4 cut(s)	236, 273, 302, 572
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	5 cut(s)	20, 139, 214, 341, 391
PkrI	GCNGC	4 cut(s)	129, 439, 502, 618
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	647
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SaqAI	TTAA	4 cut(s)	104, 158, 366, 450
SatI	GCNGC	4 cut(s)	128, 438, 501, 617
Sau3AI	GATC	5 cut(s)	58, 73, 256, 647, 674
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	8 cut(s)	111, 129, 169, 179, 268, 445, 460, 469
SfcI	CTRYAG	2 cut(s)	39, 208
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	2 cut(s)	155, 398
SsiI	CCGC	4 cut(s)	98, 193, 241, 494
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	386, 524
TaqI	TCGA	2 cut(s)	344, 542
TasI	AATT	2 cut(s)	155, 398
TfiI	GAWTC	5 cut(s)	20, 139, 214, 341, 391
Tru1I	TTAA	4 cut(s)	104, 158, 366, 450
Tru9I	TTAA	4 cut(s)	104, 158, 366, 450
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	4 cut(s)	127, 437, 500, 616
TspDTI	ATGAA	3 cut(s)	198, 258, 342
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	1 cut(s)	243
XagI	CCTNNNNNAGG	1 cut(s)	462
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.