Rh5DG082600

HCNGP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008773
Physical Location & Seq
Forward (+)
7262627 .. 7267694
5068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG082600.1

Sequence Viewer

Length: 1017 bp
ATGGCCTCGAGAAAGCGGCAATTCGAGGGCATCGCGATGCTGTCGATGTACAACGACGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGACGAAGACATGAACGACGCTGAAGAACGTGGCGAACAAGAAGAGCGCGGCGGAGAGAGAGAAGACGGAGAACGGCGGGAACACGGCGGCGATGCCTCCATGTTGGATGTCGATGCAACGGCGGCCGTTGATTCTGGTAACGATGATAATGCAACGAGCGGTGGGGATGATGAGAACTCGGCGCGGAGTGAAGGGCAGTTTCGTCGTTCTTCGTCGCAACAGCAGCTCTCTCAGGCGACGGGATCGCCGCAGCAAGTGGCGCCGGGGAAGTTGAGTAGGAGAGGGACGCTTGTGGACTATGGCCATGATGAAGTTGCCATGTCTCCAGAGCCTGAGGAGGGTGAAATTGATGGAAGTGGTCGAATTTTGTCTACCAATGGTGATTCACATGATAAGGCACCTCAGTTAAGCAATCAAGTAACTCCTCAAATATCTGAGCCGTCACAATCTGAAACACTGAATGAGACTATACTTGAATCAGAGGGTAGAAATGCTATAGAGGTTGTTGCGGAAGATCAAAAAAATGTTGATCCATTAGATAAGTTTCTTCCACCGCCATTAAAGCTCAAGTGCTCAGAGGAGCTGCAAAGAAAGATTCAAAAGTTTCTTGAATTAAAGAGAGCTGGGAAAAGCTTCAATGAAGAAGTGCGGAAAAAGAAGGACTATAGGAATCCAGACTTTCTATTGCACGCAGTGCGGTATCAAGATATTGATCAGATAGGTTCATGCTTCAGTAAAGATGTATTTGACCCTCATGGATTTGACAAAAGCGACTACTATGATGAAATAGAGGCTGATTCGAGGCGTGAAATGGAAAGGGTTAATCAAGAAAAAAAGAACCGTCAGAATCTTGAATTTGTTTCCGGTGGAAGACAATCTACAATAGTTGGTGCTGCACCTAAACTTAATGTACCTCTTCCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCNGP

Protein Analysis

338

Amino Acids

37.86

Weight (kDa)

4.5

Isoelectric Point (pI)

67.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCNGP PF07818 213 - 305 2.4e-29 HCNGP-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 349, 487
AccBSI CCGCTC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 461
AccII CGCG 3 cut(s) 35, 138, 274
AclWI GGATC 2 cut(s) 340, 614
AcoI YGGCCR 2 cut(s) 213, 391
AcsI RAATTY 2 cut(s) 453, 944
AcuI CTGAAG 2 cut(s) 132, 805
AcyI GRCGYC 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 784
AfaI GTAC 2 cut(s) 50, 1002
AfiI CCNNNNNNNGG 2 cut(s) 428, 1010
AgsI TTSAA 5 cut(s) 566, 689, 701, 727, 944
AjnI CCWGG 1 cut(s) 1009
AluBI AGCT 5 cut(s) 316, 655, 673, 713, 723
AluI AGCT 5 cut(s) 316, 655, 673, 713, 723
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 2 cut(s) 417, 548
AlwI GGATC 2 cut(s) 340, 614
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 3 cut(s) 3, 213, 391
ApeKI GCWGC 4 cut(s) 313, 340, 673, 983
ApoI RAATTY 2 cut(s) 453, 944
Asp700I GAANNNNTTC 1 cut(s) 722
AspLEI GCGC 3 cut(s) 138, 274, 352
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 2 cut(s) 443, 482
AvaI CYCGRG 1 cut(s) 7
AxyI CCTNAGG 1 cut(s) 423
BalI TGGCCA 1 cut(s) 393
BanI GGYRCC 2 cut(s) 349, 487
BarI GAAGNNNNNNTAC 2 cut(s) 952, 984
BbsI GAAGAC 3 cut(s) 102, 159, 967
Bbv12I GWGCWC 1 cut(s) 665
BbvI GCAGC 4 cut(s) 325, 352, 660, 970
BccI CCATC 1 cut(s) 434
BceAI ACGGC 5 cut(s) 179, 190, 200, 225, 514
BcgI CGANNNNNNTGC 4 cut(s) 221, 255, 275, 309
BciT130I CCWGG 1 cut(s) 1011
BclI TGATCA 1 cut(s) 802
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 417, 548
BfmI CTRYAG 2 cut(s) 585, 754
BfoI RGCGCY 1 cut(s) 353
BisI GCNGC 9 cut(s) 17, 139, 178, 213, 314, 338, 341, 674, 984
BlsI GCNGC 9 cut(s) 18, 140, 179, 214, 315, 339, 342, 675, 985
Bme1390I CCNGG 2 cut(s) 354, 1011
BmeT110I CYCGRG 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 351, 489
BmrFI CCNGG 2 cut(s) 354, 1011
BmsI GCATC 4 cut(s) 27, 39, 172, 193
BpiI GAAGAC 3 cut(s) 102, 159, 967
BpmI CTGGAG 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 801
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 953
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 1010
Bse21I CCTNAGG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 1 cut(s) 1011
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 202, 262
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 2 cut(s) 428, 1010
BseMII CTCAG 5 cut(s) 335, 414, 506, 516, 678
BseRI GAGGAG 3 cut(s) 440, 504, 683
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 4 cut(s) 325, 352, 660, 970
BseYI CCCAGC 1 cut(s) 713
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 3 cut(s) 35, 138, 274
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 3 cut(s) 5, 215, 393
BshNI GGYRCC 2 cut(s) 349, 487
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 665
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 2 cut(s) 353, 954
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 428, 1010
BsmAI GTCTC 2 cut(s) 417, 548
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 3 cut(s) 5, 215, 393
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 665
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 4 cut(s) 332, 604, 619, 802
Bsp68I TCGCGA 1 cut(s) 35
BspANI GGCC 3 cut(s) 5, 215, 393
BspCNI CTCAG 5 cut(s) 334, 415, 505, 517, 677
BspFNI CGCG 3 cut(s) 35, 138, 274
BspLI GGNNCC 2 cut(s) 351, 489
BspPI GGATC 2 cut(s) 340, 614
BspQI GCTCTTC 1 cut(s) 126
BspT107I GGYRCC 2 cut(s) 349, 487
BsrBI CCGCTC 1 cut(s) 249
BsrGI TGTACA 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 4 cut(s) 332, 604, 619, 802
BssNI GRCGYC 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 1011
Bst4CI ACNGT 1 cut(s) 932
Bst6I CTCTTC 4 cut(s) 75, 81, 126, 1011
BstACI GRCGYC 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 784
BstAUI TGTACA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 5 cut(s) 321, 423, 492, 525, 664
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 2 cut(s) 202, 262
BstFNI CGCG 3 cut(s) 35, 138, 274
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 3 cut(s) 138, 274, 352
BstKTI GATC 4 cut(s) 335, 607, 622, 805
BstMAI GTCTC 2 cut(s) 417, 548
BstMBI GATC 4 cut(s) 332, 604, 619, 802
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 5 cut(s) 212, 313, 349, 652, 784
BstNI CCWGG 1 cut(s) 1011
BstSCI CCNGG 2 cut(s) 352, 1009
BstSFI CTRYAG 2 cut(s) 585, 754
BstUI CGCG 3 cut(s) 35, 138, 274
BstV1I GCAGC 4 cut(s) 325, 352, 660, 970
BstV2I GAAGAC 3 cut(s) 102, 159, 967
BstZI CGGCCG 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 3 cut(s) 5, 215, 393
BtgZI GCGATG 3 cut(s) 16, 50, 195
BtsCI GGATG 2 cut(s) 202, 262
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 2 cut(s) 545, 789
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 780
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 3 cut(s) 138, 274, 352
CseI GACGC 2 cut(s) 116, 385
Csp6I GTAC 2 cut(s) 49, 1001
CviAII CATG 7 cut(s) 100, 190, 395, 409, 479, 816, 845
CviQI GTAC 2 cut(s) 49, 1001
DdeI CTNAG 5 cut(s) 321, 423, 492, 525, 664
DinI GGCGCC 1 cut(s) 351
DpnI GATC 4 cut(s) 334, 606, 621, 804
DpnII GATC 4 cut(s) 332, 604, 619, 802
DraIII CACNNNGTG 1 cut(s) 784
EaeI YGGCCR 2 cut(s) 213, 391
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 4 cut(s) 75, 81, 126, 1011
EarI CTCTTC 4 cut(s) 75, 81, 126, 1011
EciI GGCGGA 1 cut(s) 156
EclXI CGGCCG 1 cut(s) 213
Eco52I CGGCCG 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 132, 805
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoRII CCWGG 1 cut(s) 1009
EgeI GGCGCC 1 cut(s) 351
EheI GGCGCC 1 cut(s) 351
FaeI CATG 7 cut(s) 103, 193, 398, 412, 482, 819, 848
FaqI GGGAC 1 cut(s) 388
FatI CATG 7 cut(s) 99, 189, 394, 408, 478, 815, 844
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 802
FblI GTMKAC 1 cut(s) 461
Fnu4HI GCNGC 9 cut(s) 17, 139, 178, 213, 314, 338, 341, 674, 984
FokI GGATG 2 cut(s) 209, 269
Fsp4HI GCNGC 9 cut(s) 17, 139, 178, 213, 314, 338, 341, 674, 984
GlaI GCGC 3 cut(s) 137, 273, 351
GluI GCNGC 9 cut(s) 17, 139, 178, 213, 314, 338, 341, 674, 984
GsaI CCCAGC 1 cut(s) 717
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 3 cut(s) 5, 215, 393
HapII CCGG 2 cut(s) 353, 954
HgaI GACGC 2 cut(s) 116, 385
HhaI GCGC 3 cut(s) 138, 274, 352
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 7 cut(s) 103, 193, 398, 412, 482, 819, 848
Hin6I GCGC 3 cut(s) 136, 272, 350
HinP1I GCGC 3 cut(s) 136, 272, 350
HindIII AAGCTT 1 cut(s) 721
HinfI GANTC 7 cut(s) 221, 473, 566, 685, 760, 887, 937
HpaII CCGG 2 cut(s) 353, 954
HphI GGTGA 2 cut(s) 443, 482
Hpy166II GTNNAC 2 cut(s) 385, 462
Hpy188I TCNGA 6 cut(s) 526, 541, 571, 667, 807, 936
Hpy188III TCNNGA 8 cut(s) 9, 34, 416, 698, 764, 794, 917, 941
Hpy8I GTNNAC 2 cut(s) 385, 462
Hpy99I CGWCG 5 cut(s) 59, 110, 297, 307, 331
HpyAV CCTTC 2 cut(s) 275, 742
HpyCH4III ACNGT 1 cut(s) 932
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 206, 242, 676, 778, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 313, 349, 652, 784
HpyF3I CTNAG 5 cut(s) 321, 423, 492, 525, 664
HpySE526I ACGT 1 cut(s) 118
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 7 cut(s) 103, 193, 398, 412, 482, 819, 848
HspAI GCGC 3 cut(s) 136, 272, 350
KasI GGCGCC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 4 cut(s) 332, 604, 619, 802
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 670
LpnPI CCDG 9 cut(s) 210, 308, 366, 429, 435, 699, 777, 967, 996
Lsp1109I GCAGC 4 cut(s) 325, 352, 660, 970
LweI GCATC 4 cut(s) 27, 39, 172, 193
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 3 cut(s) 227, 508, 531
MalI GATC 4 cut(s) 334, 606, 621, 804
MbiI CCGCTC 1 cut(s) 249
MboI GATC 4 cut(s) 332, 604, 619, 802
MhlI GDGCHC 1 cut(s) 665
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 5 cut(s) 20, 435, 453, 701, 944
MluNI TGGCCA 1 cut(s) 393
Mly113I GGCGCC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 722
MscI TGGCCA 1 cut(s) 393
MseI TTAA 5 cut(s) 497, 650, 704, 912, 996
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 393
MspI CCGG 2 cut(s) 353, 954
MspR9I CCNGG 2 cut(s) 354, 1011
MvaI CCWGG 1 cut(s) 1011
MvnI CGCG 3 cut(s) 35, 138, 274
MwoI GCNNNNNNNGC 5 cut(s) 212, 313, 349, 652, 784
NarI GGCGCC 1 cut(s) 350
NciI CCSGG 1 cut(s) 354
NdeII GATC 4 cut(s) 332, 604, 619, 802
NlaIII CATG 7 cut(s) 103, 193, 398, 412, 482, 819, 848
NlaIV GGNNCC 2 cut(s) 351, 489
NmeAIII GCCGAG 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 531
NruI TCGCGA 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 722
PfeI GAWTC 7 cut(s) 221, 473, 566, 685, 760, 887, 937
PkrI GCNGC 9 cut(s) 18, 140, 179, 214, 315, 339, 342, 675, 985
PluTI GGCGCC 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 1009
PspFI CCCAGC 1 cut(s) 713
PspGI CCWGG 1 cut(s) 1009
PspN4I GGNNCC 2 cut(s) 351, 489
PstNI CAGNNNCTG 1 cut(s) 422
RruI TCGCGA 1 cut(s) 35
RsaI GTAC 2 cut(s) 50, 1002
RsaNI GTAC 2 cut(s) 49, 1001
RseI CAYNNNNRTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 5 cut(s) 497, 650, 704, 912, 996
SatI GCNGC 9 cut(s) 17, 139, 178, 213, 314, 338, 341, 674, 984
Sau3AI GATC 4 cut(s) 332, 604, 619, 802
ScrFI CCNGG 2 cut(s) 354, 1011
SduI GDGCHC 1 cut(s) 665
SfaNI GCATC 4 cut(s) 27, 39, 172, 193
SfcI CTRYAG 2 cut(s) 585, 754
SfoI GGCGCC 1 cut(s) 351
Sfr274I CTCGAG 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 7, 656
SmoI CTYRAG 2 cut(s) 7, 656
Sse9I AATT 5 cut(s) 20, 435, 453, 701, 944
SspDI GGCGCC 1 cut(s) 349
StyD4I CCNGG 2 cut(s) 352, 1009
TaaI ACNGT 1 cut(s) 932
TaiI ACGT 1 cut(s) 121
TaqI TCGA 6 cut(s) 8, 24, 44, 201, 451, 890
TasI AATT 5 cut(s) 20, 435, 453, 701, 944
TatI WGTACW 1 cut(s) 48
TauI GCSGC 5 cut(s) 19, 141, 180, 215, 340
TfiI GAWTC 7 cut(s) 221, 473, 566, 685, 760, 887, 937
Tru1I TTAA 5 cut(s) 497, 650, 704, 912, 996
Tru9I TTAA 5 cut(s) 497, 650, 704, 912, 996
TscAI CASTG 2 cut(s) 552, 789
TseFI GTSAC 1 cut(s) 531
TseI GCWGC 4 cut(s) 313, 340, 673, 983
Tsp45I GTSAC 1 cut(s) 531
TspDTI ATGAA 5 cut(s) 116, 414, 744, 804, 888
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 2 cut(s) 552, 789
XagI CCTNNNNNAGG 1 cut(s) 1008
XapI RAATTY 2 cut(s) 453, 944
XhoI CTCGAG 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.