Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002990.1

Orthogroup ID

OG0008773

Physical Location & Seq

Genomic Coordinates Reverse (-)

12072 .. 13026

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002990.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggcctcgagaaagcggcaattcgagggcatcgcgatgctgtcgatgtacaacgacgaggaagaagaagaagaagaagaagaggaagaggacgaagacatggacgacgctgaagaacgcggcgaacaagaagagcgcggcggagagagagaagacggagaacggcgggaacacggcggcgatgcgtccacgttggatgtcgatgcgacggcggccgttgattctggtaacgatgacaatgcaacgagcggtgtggatgatgagaactcggcgcggagcgaagggcagtttcgtcgttcttcgtcgcaacagcagctctctcaggcgacgggatcgccgcagcaagtggcgccggggaagttgagtaggagagggacgcttgtggactatggccatgatgaagttgccatgtctccagagcctgaggagggtgaaattgatggaagtggtaccattttgtctaccaatggtgattcacatgataagacacctcagttaagcaatcaagtaactcctcaaatatctgagccgtcacaatctgaaacactgaatgagactatacttgaatcagagggtagaaatgctacagaggctgttgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCNGP

Protein Analysis

200

Amino Acids

21.74

Weight (kDa)

4.05

Isoelectric Point (pI)

78.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29220 AT1G29220
fragaria_vesca	FvH4_3g07540 FvH4_3g07540 FvH4_3g37800 FvH4_3g37800
malus_domestica	MD05G1298600.v1.1 MD10G1277900.v1.1
prunus_persica	Prupe.4G063800_v2.0.a1
pyrus_communis	pycom05g27640 pycom10g23190
rosa_chinensis	RchiOBHm_Chr5g0011231
rosa_laevigata	RLG00000031820
rosa_multiflora	Rmu_sc0002990.1_g000005 Rmu_sc0035380.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065170
rosa_rugosa	Rorug04G0455900 Rorug04G0456000
rosa_samantha	Rh5AG087900 Rh5BG082700 Rh5CG095700 Rh5DG082600
rosa_wichuraiana	Rw5G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	449
AccB1I	GGYRCC	2 cut(s)	349, 449
AccBSI	CCGCTC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	461
AccII	CGCG	4 cut(s)	35, 120, 138, 274
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	2 cut(s)	213, 391
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	2 cut(s)	50, 451
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	566
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw26I	GTCTC	2 cut(s)	417, 548
AlwI	GGATC	1 cut(s)	340
AlwNI	CAGNNNCTG	2 cut(s)	422, 593
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	3 cut(s)	3, 213, 391
ApeKI	GCWGC	2 cut(s)	313, 340
Asp718I	GGTACC	1 cut(s)	449
AspLEI	GCGC	3 cut(s)	138, 274, 352
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	2 cut(s)	443, 482
AvaI	CYCGRG	1 cut(s)	7
AxyI	CCTNAGG	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	2 cut(s)	349, 449
BbsI	GAAGAC	2 cut(s)	102, 159
BbvI	GCAGC	2 cut(s)	325, 352
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	5 cut(s)	179, 190, 200, 225, 514
BcgI	CGANNNNNNTGC	4 cut(s)	221, 255, 275, 309
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	417, 548
BfmI	CTRYAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	353
BisI	GCNGC	8 cut(s)	17, 121, 139, 178, 213, 314, 338, 341
BlsI	GCNGC	8 cut(s)	18, 122, 140, 179, 214, 315, 339, 342
Bme1390I	CCNGG	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	351, 451
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	4 cut(s)	27, 39, 172, 193
BpiI	GAAGAC	2 cut(s)	102, 159
BpmI	CTGGAG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse21I	CCTNAGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	202, 262
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	4 cut(s)	335, 414, 506, 516
BseRI	GAGGAG	2 cut(s)	440, 504
BseX3I	CGGCCG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	325, 352
Bsh1236I	CGCG	4 cut(s)	35, 120, 138, 274
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	5, 215, 393
BshNI	GGYRCC	2 cut(s)	349, 449
BsiEI	CGRYCG	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	417, 548
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	5, 215, 393
BsoBI	CYCGRG	1 cut(s)	7
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	332
Bsp68I	TCGCGA	1 cut(s)	35
BspANI	GGCC	3 cut(s)	5, 215, 393
BspCNI	CTCAG	4 cut(s)	334, 415, 505, 517
BspFNI	CGCG	4 cut(s)	35, 120, 138, 274
BspLI	GGNNCC	2 cut(s)	351, 451
BspPI	GGATC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	126
BspT107I	GGYRCC	2 cut(s)	349, 449
BsrBI	CCGCTC	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	1 cut(s)	332
BssNI	GRCGYC	1 cut(s)	350
Bst6I	CTCTTC	3 cut(s)	75, 81, 126
BstACI	GRCGYC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	48
BstDEI	CTNAG	4 cut(s)	321, 423, 492, 525
BstF5I	GGATG	2 cut(s)	202, 262
BstFNI	CGCG	4 cut(s)	35, 120, 138, 274
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	3 cut(s)	138, 274, 352
BstKTI	GATC	1 cut(s)	335
BstMAI	GTCTC	2 cut(s)	417, 548
BstMBI	GATC	1 cut(s)	332
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 313, 349, 590
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	4 cut(s)	35, 120, 138, 274
BstV1I	GCAGC	2 cut(s)	325, 352
BstV2I	GAAGAC	2 cut(s)	102, 159
BstZI	CGGCCG	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	5, 215, 393
BtgZI	GCGATG	3 cut(s)	16, 50, 195
BtsCI	GGATG	2 cut(s)	202, 262
BtsIMutI	CAGTG	1 cut(s)	545
BtuMI	TCGCGA	1 cut(s)	35
CaiI	CAGNNNCTG	2 cut(s)	422, 593
CfoI	GCGC	3 cut(s)	138, 274, 352
CseI	GACGC	3 cut(s)	116, 174, 385
Csp6I	GTAC	2 cut(s)	49, 450
CviAII	CATG	4 cut(s)	100, 395, 409, 479
CviJI	RGCY	7 cut(s)	5, 215, 316, 393, 421, 529, 593
CviKI_1	RGCY	7 cut(s)	5, 215, 316, 393, 421, 529, 593
CviQI	GTAC	2 cut(s)	49, 450
DdeI	CTNAG	4 cut(s)	321, 423, 492, 525
DinI	GGCGCC	1 cut(s)	351
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
EaeI	YGGCCR	2 cut(s)	213, 391
EagI	CGGCCG	1 cut(s)	213
Eam1104I	CTCTTC	3 cut(s)	75, 81, 126
EarI	CTCTTC	3 cut(s)	75, 81, 126
EciI	GGCGGA	1 cut(s)	156
EclXI	CGGCCG	1 cut(s)	213
Eco52I	CGGCCG	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	7
EgeI	GGCGCC	1 cut(s)	351
EheI	GGCGCC	1 cut(s)	351
FaeI	CATG	4 cut(s)	103, 398, 412, 482
FaiI	YATR	7 cut(s)	101, 390, 396, 410, 480, 560, 601
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	4 cut(s)	99, 394, 408, 478
FauI	CCCGC	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	461
Fnu4HI	GCNGC	8 cut(s)	17, 121, 139, 178, 213, 314, 338, 341
FokI	GGATG	2 cut(s)	209, 269
Fsp4HI	GCNGC	8 cut(s)	17, 121, 139, 178, 213, 314, 338, 341
GlaI	GCGC	3 cut(s)	137, 273, 351
GluI	GCNGC	8 cut(s)	17, 121, 139, 178, 213, 314, 338, 341
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	3 cut(s)	5, 215, 393
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	3 cut(s)	116, 174, 385
HhaI	GCGC	3 cut(s)	138, 274, 352
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	103, 398, 412, 482
Hin6I	GCGC	3 cut(s)	136, 272, 350
HinP1I	GCGC	3 cut(s)	136, 272, 350
HinfI	GANTC	3 cut(s)	221, 473, 566
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	2 cut(s)	443, 482
Hpy166II	GTNNAC	3 cut(s)	189, 385, 462
Hpy188I	TCNGA	3 cut(s)	526, 541, 571
Hpy188III	TCNNGA	3 cut(s)	9, 34, 416
Hpy8I	GTNNAC	3 cut(s)	189, 385, 462
Hpy99I	CGWCG	6 cut(s)	59, 110, 211, 297, 307, 331
HpyAV	CCTTC	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	242, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 313, 349, 590
HpyF3I	CTNAG	4 cut(s)	321, 423, 492, 525
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	4 cut(s)	103, 398, 412, 482
HspAI	GCGC	3 cut(s)	136, 272, 350
KasI	GGCGCC	1 cut(s)	349
KpnI	GGTACC	1 cut(s)	453
Kzo9I	GATC	1 cut(s)	332
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	5 cut(s)	210, 308, 366, 429, 435
Lsp1109I	GCAGC	2 cut(s)	325, 352
LweI	GCATC	4 cut(s)	27, 39, 172, 193
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	227, 508, 531
MalI	GATC	1 cut(s)	334
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	1 cut(s)	332
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	2 cut(s)	20, 435
MluNI	TGGCCA	1 cut(s)	393
Mly113I	GGCGCC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	354
MvnI	CGCG	4 cut(s)	35, 120, 138, 274
MwoI	GCNNNNNNNGC	4 cut(s)	212, 313, 349, 590
NarI	GGCGCC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	4 cut(s)	103, 398, 412, 482
NlaIV	GGNNCC	2 cut(s)	351, 451
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	531
NruI	TCGCGA	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	126
PfeI	GAWTC	3 cut(s)	221, 473, 566
PkrI	GCNGC	8 cut(s)	18, 122, 140, 179, 214, 315, 339, 342
PluTI	GGCGCC	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	351, 451
PstNI	CAGNNNCTG	2 cut(s)	422, 593
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	2 cut(s)	50, 451
RsaNI	GTAC	2 cut(s)	49, 450
RseI	CAYNNNNRTG	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	8 cut(s)	17, 121, 139, 178, 213, 314, 338, 341
Sau3AI	GATC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	3 cut(s)	194, 318, 493
SfaNI	GCATC	4 cut(s)	27, 39, 172, 193
SfcI	CTRYAG	1 cut(s)	585
SfoI	GGCGCC	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	2 cut(s)	20, 435
SspDI	GGCGCC	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	352
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	8, 24, 44, 201
TasI	AATT	2 cut(s)	20, 435
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	6 cut(s)	19, 123, 141, 180, 215, 340
TfiI	GAWTC	3 cut(s)	221, 473, 566
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	531
TseI	GCWGC	2 cut(s)	313, 340
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	552
XhoI	CTCGAG	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.