AT1G29280
WRKY Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011269
Physical Location & Seq
Forward (+)
10236337 .. 10237990
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29280.1

Sequence Viewer

Length: 780 bp
ATGAAGCGAGGTCTAGATATGGCGAGAAGCTACAATGATCATGAAAGTAGTCAAGAAACCGGACCCGAATCACCAAATTCTTCAACCTTTAACGGCATGAAAGCTCTTATCTCTTCTCATTCGCCTAAAAGAAGCAGGAGATCCGTAGAGAAGAGAGTAGTGAACGTACCGATGAAAGAAATGGAAGGATCTCGGCACAAAGGGGACACAACTCCGCCCTCAGATTCATGGGCTTGGCGTAAGTACGGCCAAAAGCCCATTAAGGGATCTCCATACCCTAGAGGTTATTACCGTTGTAGTAGCACAAAAGGTTGTCCGGCGAGGAAGCAAGTCGAGAGAAGCAGAGATGATCCAACGATGATTCTCATCACTTACACTTCTGAGCATAACCATCCTTGGCCTCTCACTTCTTCCACAAGAAACGGGCCTAAACCTAAACCCGAGCCCAAACCCGAACCTGAGCCTGAGGTAGAGCCAGAGGCGGAGGAGGAGGATAATAAGTTTATGGTTCTTGGAAGGGGGATTGAAACGACGCCATCATGTGTCGACGAGTTCGCATGGTTTACGGAGATGGAGACAACATCTTCGACGATTCTTGAGAGCCCGATTTTCTCGTCGGAGAAAAAGACGGCTGTCTCGGGGGCTGATGACGTGGCGGTGTTCTTTCCGATGGGAGAAGAGGATGAGTCTTTGTTCGCCGATCTCGGCGAGTTGCCGGAGTGTTCTGTGGTGTTTCGTCACCGGAGTAGCGTAGTGGGGTCACAAGTTGAGATCTTTTGA

Protein Analysis

259

Amino Acids

29.05

Weight (kDa)

5.53

Isoelectric Point (pI)

68.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 75 - 132 5.5e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29280
fragaria_vesca FvH4_3g07360 FvH4_3g07360
malus_domestica MD05G1295700.v1.1 MD10G1275800.v1.1
prunus_persica Prupe.4G066400_v2.0.a1
pyrus_communis pycom05g27470 pycom10g23050
rosa_chinensis RchiOBHm_Chr5g0011581
rosa_laevigata RLG00000031844
rosa_multiflora Rmu_sc0009001.1_g000011 Rmu_sc0040970.1_g000001
rosa_roxburghii Rroxscaffold_1G00064910
rosa_rugosa Rorug04G0457800 Rorug04G0457800
rosa_samantha Rh5AG089500 Rh5BG084800 Rh5CG098900 Rh5DG084800
rosa_wichuraiana Rw5G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 546
AciI CCGC 3 cut(s) 215, 482, 656
AclWI GGATC 4 cut(s) 135, 196, 274, 344
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 533
AfaI GTAC 2 cut(s) 168, 245
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 84, 527
AjiI CACGTC 1 cut(s) 652
AluBI AGCT 2 cut(s) 30, 104
AluI AGCT 2 cut(s) 30, 104
Alw26I GTCTC 2 cut(s) 569, 640
AlwI GGATC 4 cut(s) 135, 196, 274, 344
Ama87I CYCGRG 2 cut(s) 440, 637
AoxI GGCC 3 cut(s) 247, 398, 425
ApoI RAATTY 1 cut(s) 76
ArsI GACNNNNNNTTYG 2 cut(s) 568, 600
AspS9I GGNCC 2 cut(s) 62, 425
AsuHPI GGTGA 2 cut(s) 63, 731
AvaI CYCGRG 2 cut(s) 440, 637
AvaII GGWCC 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 465
BanII GRGCYC 2 cut(s) 447, 605
BccI CCATC 4 cut(s) 399, 544, 565, 664
BceAI ACGGC 3 cut(s) 109, 262, 645
BclI TGATCA 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 569, 640
BfaI CTAG 2 cut(s) 14, 279
BglII AGATCT 1 cut(s) 771
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 2 cut(s) 440, 637
BmgBI CACGTC 1 cut(s) 652
BmgT120I GGNCC 2 cut(s) 62, 425
BmiI GGNNCC 1 cut(s) 64
BoxI GACNNNNGTC 1 cut(s) 632
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 395
BsaWI WCCGGW 2 cut(s) 59, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse21I CCTNAGG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 2 cut(s) 391, 688
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 4 cut(s) 234, 372, 450, 456
BseRI GAGGAG 2 cut(s) 500, 503
BshFI GGCC 3 cut(s) 249, 400, 427
BsiHKCI CYCGRG 2 cut(s) 440, 637
BsiSI CCGG 4 cut(s) 60, 317, 716, 742
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 569, 640
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 3 cut(s) 249, 400, 427
BsoBI CYCGRG 2 cut(s) 440, 637
Bsp1286I GDGCHC 2 cut(s) 447, 605
Bsp143I GATC 7 cut(s) 37, 140, 188, 266, 349, 700, 771
BspACI CCGC 3 cut(s) 215, 482, 656
BspANI GGCC 3 cut(s) 249, 400, 427
BspCNI CTCAG 4 cut(s) 233, 373, 451, 457
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 4 cut(s) 135, 196, 274, 344
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 7 cut(s) 37, 140, 188, 266, 349, 700, 771
BssNI GRCGYC 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 3 cut(s) 118, 146, 672
BstACI GRCGYC 1 cut(s) 533
BstDEI CTNAG 4 cut(s) 220, 381, 459, 465
BstF5I GGATG 2 cut(s) 391, 688
BstKTI GATC 7 cut(s) 40, 143, 191, 269, 352, 703, 774
BstMAI GTCTC 2 cut(s) 569, 640
BstMBI GATC 7 cut(s) 37, 140, 188, 266, 349, 700, 771
BstPAI GACNNNNGTC 1 cut(s) 632
BstX2I RGATCY 4 cut(s) 140, 188, 266, 771
BstYI RGATCY 4 cut(s) 140, 188, 266, 771
Bsu36I CCTNAGG 1 cut(s) 465
BsuRI GGCC 3 cut(s) 249, 400, 427
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 2 cut(s) 391, 688
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 62, 425
CseI GACGC 1 cut(s) 541
Csp6I GTAC 2 cut(s) 167, 244
CviAII CATG 5 cut(s) 41, 97, 228, 540, 558
CviQI GTAC 2 cut(s) 167, 244
DdeI CTNAG 4 cut(s) 220, 381, 459, 465
DpnI GATC 7 cut(s) 39, 142, 190, 268, 351, 702, 773
DpnII GATC 7 cut(s) 37, 140, 188, 266, 349, 700, 771
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 3 cut(s) 118, 146, 672
EarI CTCTTC 3 cut(s) 118, 146, 672
EciI GGCGGA 2 cut(s) 204, 497
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 2 cut(s) 447, 605
Eco47I GGWCC 1 cut(s) 62
Eco81I CCTNAGG 1 cut(s) 465
Eco88I CYCGRG 2 cut(s) 440, 637
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 2 cut(s) 447, 605
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 5 cut(s) 44, 100, 231, 543, 561
FaiI YATR 9 cut(s) 20, 42, 98, 229, 274, 387, 506, 541, 559
FaqI GGGAC 1 cut(s) 218
FatI CATG 5 cut(s) 40, 96, 227, 539, 557
FbaI TGATCA 1 cut(s) 37
FblI GTMKAC 1 cut(s) 546
FokI GGATG 2 cut(s) 378, 695
FriOI GRGCYC 2 cut(s) 447, 605
FspBI CTAG 2 cut(s) 14, 279
HaeIII GGCC 3 cut(s) 249, 400, 427
HapII CCGG 4 cut(s) 60, 317, 716, 742
HgaI GACGC 1 cut(s) 541
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 5 cut(s) 44, 100, 231, 543, 561
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 5 cut(s) 68, 224, 361, 592, 686
HpaII CCGG 4 cut(s) 60, 317, 716, 742
HphI GGTGA 2 cut(s) 63, 731
Hpy166II GTNNAC 3 cut(s) 163, 547, 564
Hpy188I TCNGA 4 cut(s) 223, 382, 619, 669
Hpy188III TCNNGA 5 cut(s) 14, 41, 53, 334, 596
Hpy8I GTNNAC 3 cut(s) 163, 547, 564
Hpy99I CGWCG 4 cut(s) 535, 551, 592, 619
HpyAV CCTTC 2 cut(s) 179, 510
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 2 cut(s) 165, 651
HpyF3I CTNAG 4 cut(s) 220, 381, 459, 465
HpySE526I ACGT 2 cut(s) 165, 651
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 5 cut(s) 44, 100, 231, 543, 561
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 7 cut(s) 37, 140, 188, 266, 349, 700, 771
LpnPI CCDG 8 cut(s) 73, 121, 330, 471, 477, 489, 729, 755
MaeI CTAG 2 cut(s) 14, 279
MaeII ACGT 2 cut(s) 165, 651
MaeIII GTNAC 2 cut(s) 737, 759
MalI GATC 7 cut(s) 39, 142, 190, 268, 351, 702, 773
MboI GATC 7 cut(s) 37, 140, 188, 266, 349, 700, 771
MboII GAAGA 6 cut(s) 72, 105, 163, 402, 576, 689
MflI RGATCY 4 cut(s) 140, 188, 266, 771
MhlI GDGCHC 2 cut(s) 447, 605
MluCI AATT 1 cut(s) 76
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 2 cut(s) 377, 597
MseI TTAA 2 cut(s) 90, 261
MspI CCGG 4 cut(s) 60, 317, 716, 742
NdeII GATC 7 cut(s) 37, 140, 188, 266, 349, 700, 771
NlaIII CATG 5 cut(s) 44, 100, 231, 543, 561
NlaIV GGNNCC 1 cut(s) 64
NmeAIII GCCGAG 2 cut(s) 172, 684
NmuCI GTSAC 2 cut(s) 737, 759
PagI TCATGA 1 cut(s) 40
PfeI GAWTC 4 cut(s) 68, 224, 361, 592
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PshAI GACNNNNGTC 1 cut(s) 632
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 62, 425
PsuI RGATCY 4 cut(s) 140, 188, 266, 771
RsaI GTAC 2 cut(s) 168, 245
RsaNI GTAC 2 cut(s) 167, 244
SalI GTCGAC 1 cut(s) 545
SaqAI TTAA 2 cut(s) 90, 261
Sau3AI GATC 7 cut(s) 37, 140, 188, 266, 349, 700, 771
Sau96I GGNCC 2 cut(s) 62, 425
SchI GAGTC 1 cut(s) 695
SduI GDGCHC 2 cut(s) 447, 605
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 1 cut(s) 76
SsiI CCGC 3 cut(s) 215, 482, 656
SspMI CTAG 2 cut(s) 14, 279
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 2 cut(s) 168, 654
TaqI TCGA 3 cut(s) 333, 546, 587
TasI AATT 1 cut(s) 76
TfiI GAWTC 4 cut(s) 68, 224, 361, 592
Tru1I TTAA 2 cut(s) 90, 261
Tru9I TTAA 2 cut(s) 90, 261
TseFI GTSAC 2 cut(s) 737, 759
Tsp45I GTSAC 2 cut(s) 737, 759
TspDTI ATGAA 5 cut(s) 17, 57, 113, 188, 216
TspGWI ACGGA 2 cut(s) 133, 581
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 2 cut(s) 14, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.