Rmu_sc0040970.1_g000001
WRKY Family

WRKY Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040970.1
OG0011269
Physical Location & Seq
Reverse (-)
2 .. 279
278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040970.1_g000001.1.cds

Sequence Viewer

Length: 278 bp
ctggtgatcacctactcgtcagagcacaaccacccctggccggcttctagaagccaccatggcacgaaacccgggatcaaaaccgagacccgggaagaggagacggcggccggccagccggaacccgacccggaggagaggcggttcgcggcggatctgggcggcggcgacgaggagtcgtcgctggtgatcatccctagcgtcgtggacgagttcgggtggttcgcggacatggaaacgacgtcgtcgcgggtgctggagagccccattttcgctga

Protein Analysis

92

Amino Acids

10.12

Weight (kDa)

4.54

Isoelectric Point (pI)

66.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29280
fragaria_vesca FvH4_3g07360 FvH4_3g07360
malus_domestica MD05G1295700.v1.1 MD10G1275800.v1.1
prunus_persica Prupe.4G066400_v2.0.a1
pyrus_communis pycom05g27470 pycom10g23050
rosa_chinensis RchiOBHm_Chr5g0011581
rosa_laevigata RLG00000031844
rosa_multiflora Rmu_sc0009001.1_g000011 Rmu_sc0040970.1_g000001
rosa_roxburghii Rroxscaffold_1G00064910
rosa_rugosa Rorug04G0457800 Rorug04G0457800
rosa_samantha Rh5AG089500 Rh5BG084800 Rh5CG098900 Rh5DG084800
rosa_wichuraiana Rw5G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 245
AccII CGCG 3 cut(s) 149, 227, 250
AciI CCGC 8 cut(s) 107, 142, 149, 152, 162, 165, 227, 250
AclWI GGATC 2 cut(s) 83, 162
AcoI YGGCCR 3 cut(s) 38, 108, 112
AcyI GRCGYC 1 cut(s) 242
AfiI CCNNNNNNNGG 3 cut(s) 40, 90, 97
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 35
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 80, 95
AlwI GGATC 2 cut(s) 83, 162
Ama87I CYCGRG 2 cut(s) 71, 90
AoxI GGCC 3 cut(s) 38, 108, 112
AsuC2I CCSGG 5 cut(s) 72, 73, 91, 92, 131
AsuHPI GGTGA 2 cut(s) 16, 199
AvaI CYCGRG 2 cut(s) 71, 90
BanII GRGCYC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 37
BclI TGATCA 2 cut(s) 6, 189
BcnI CCSGG 5 cut(s) 72, 73, 91, 92, 131
BcoDI GTCTC 2 cut(s) 80, 95
BfaI CTAG 2 cut(s) 48, 198
BglI GCCNNNNNGGC 1 cut(s) 60
BisI GCNGC 4 cut(s) 108, 150, 163, 166
BlsI GCNGC 4 cut(s) 109, 151, 164, 167
Bme1390I CCNGG 6 cut(s) 37, 72, 73, 91, 92, 131
BmeRI GACNNNNNGTC 1 cut(s) 175
BmeT110I CYCGRG 2 cut(s) 71, 90
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 6 cut(s) 37, 72, 73, 91, 92, 131
BpmI CTGGAG 1 cut(s) 278
BpuMI CCSGG 5 cut(s) 72, 73, 91, 92, 131
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 35, 58, 71, 90
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 90, 97
Bse118I RCCGGY 2 cut(s) 40, 110
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 4 cut(s) 35, 58, 71, 90
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 3 cut(s) 40, 90, 97
BseRI GAGGAG 3 cut(s) 113, 149, 188
BseX3I CGGCCG 1 cut(s) 108
Bsh1236I CGCG 3 cut(s) 149, 227, 250
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 40, 110, 114
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 2 cut(s) 71, 90
BsiSI CCGG 6 cut(s) 41, 72, 91, 111, 119, 131
BslI CCNNNNNNNGG 3 cut(s) 40, 90, 97
BsmAI GTCTC 2 cut(s) 80, 95
BsmBI CGTCTC 1 cut(s) 95
BsnI GGCC 3 cut(s) 40, 110, 114
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 2 cut(s) 71, 90
Bsp1286I GDGCHC 2 cut(s) 27, 266
Bsp143I GATC 4 cut(s) 6, 75, 154, 189
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 8 cut(s) 107, 142, 149, 152, 162, 165, 227, 250
BspANI GGCC 3 cut(s) 40, 110, 114
BspFNI CGCG 3 cut(s) 149, 227, 250
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 2 cut(s) 83, 162
BspTNI GGTCTC 1 cut(s) 80
BsrFI RCCGGY 2 cut(s) 40, 110
BssAI RCCGGY 2 cut(s) 40, 110
BssECI CCNNGG 4 cut(s) 35, 58, 71, 90
BssMI GATC 4 cut(s) 6, 75, 154, 189
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 42, 112, 116
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 192
BstFNI CGCG 3 cut(s) 149, 227, 250
BstKTI GATC 4 cut(s) 9, 78, 157, 192
BstMAI GTCTC 2 cut(s) 80, 95
BstMBI GATC 4 cut(s) 6, 75, 154, 189
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 6 cut(s) 35, 70, 71, 89, 90, 129
BstUI CGCG 3 cut(s) 149, 227, 250
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BstZI CGGCCG 1 cut(s) 108
BsuRI GGCC 3 cut(s) 40, 110, 114
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 42, 112, 116
Cfr10I RCCGGY 2 cut(s) 40, 110
Cfr9I CCCGGG 2 cut(s) 71, 90
CseI GACGC 1 cut(s) 190
CviAII CATG 2 cut(s) 59, 232
CviJI RGCY 7 cut(s) 40, 44, 54, 110, 114, 118, 264
CviKI_1 RGCY 7 cut(s) 40, 44, 54, 110, 114, 118, 264
DpnI GATC 4 cut(s) 8, 77, 156, 191
DpnII GATC 4 cut(s) 6, 75, 154, 189
DriI GACNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 3 cut(s) 38, 108, 112
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 90
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 167
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 80
Eco52I CGGCCG 1 cut(s) 108
Eco88I CYCGRG 2 cut(s) 71, 90
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 2 cut(s) 62, 235
FaiI YATR 2 cut(s) 60, 233
FatI CATG 2 cut(s) 58, 231
FauI CCCGC 1 cut(s) 243
FbaI TGATCA 2 cut(s) 6, 189
Fnu4HI GCNGC 4 cut(s) 108, 150, 163, 166
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 266
FseI GGCCGGCC 1 cut(s) 114
Fsp4HI GCNGC 4 cut(s) 108, 150, 163, 166
FspBI CTAG 2 cut(s) 48, 198
GluI GCNGC 4 cut(s) 108, 150, 163, 166
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 3 cut(s) 40, 110, 114
HapII CCGG 6 cut(s) 41, 72, 91, 111, 119, 131
HgaI GACGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 2 cut(s) 62, 235
HinfI GANTC 1 cut(s) 176
HpaII CCGG 6 cut(s) 41, 72, 91, 111, 119, 131
HphI GGTGA 2 cut(s) 16, 199
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 6 cut(s) 173, 184, 206, 244, 247, 250
HpyCH4IV ACGT 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 62, 235
KroI GCCGGC 2 cut(s) 40, 110
KroNI GCCGGC 2 cut(s) 42, 112
Ksp22I TGATCA 2 cut(s) 6, 189
Kzo9I GATC 4 cut(s) 6, 75, 154, 189
MaeI CTAG 2 cut(s) 48, 198
MaeII ACGT 1 cut(s) 242
MalI GATC 4 cut(s) 8, 77, 156, 191
MboI GATC 4 cut(s) 6, 75, 154, 189
MboII GAAGA 1 cut(s) 107
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 27, 266
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 4 cut(s) 91, 127, 132, 166
MroNI GCCGGC 2 cut(s) 40, 110
MspI CCGG 6 cut(s) 41, 72, 91, 111, 119, 131
MspR9I CCNGG 6 cut(s) 37, 72, 73, 91, 92, 131
MvaI CCWGG 1 cut(s) 37
MvnI CGCG 3 cut(s) 149, 227, 250
MwoI GCNNNNNNNGC 1 cut(s) 60
NaeI GCCGGC 2 cut(s) 42, 112
NciI CCSGG 5 cut(s) 72, 73, 91, 92, 131
NcoI CCATGG 1 cut(s) 58
NdeII GATC 4 cut(s) 6, 75, 154, 189
NgoMIV GCCGGC 2 cut(s) 40, 110
NlaIII CATG 2 cut(s) 62, 235
NlaIV GGNNCC 1 cut(s) 123
PdiI GCCGGC 2 cut(s) 42, 112
PflFI GACNNNGTC 1 cut(s) 244
PkrI GCNGC 4 cut(s) 109, 151, 164, 167
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 154
PsyI GACNNNGTC 1 cut(s) 244
RigI GGCCGGCC 1 cut(s) 114
SatI GCNGC 4 cut(s) 108, 150, 163, 166
Sau3AI GATC 4 cut(s) 6, 75, 154, 189
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 6 cut(s) 37, 72, 73, 91, 92, 131
SduI GDGCHC 2 cut(s) 27, 266
SetI ASST 2 cut(s) 14, 245
SmaI CCCGGG 2 cut(s) 73, 92
SsiI CCGC 8 cut(s) 107, 142, 149, 152, 162, 165, 227, 250
SspMI CTAG 2 cut(s) 48, 198
StyD4I CCNGG 6 cut(s) 35, 70, 71, 89, 90, 129
StyI CCWWGG 1 cut(s) 58
TaiI ACGT 1 cut(s) 245
TauI GCSGC 4 cut(s) 110, 152, 165, 168
TspMI CCCGGG 2 cut(s) 71, 90
Tth111I GACNNNGTC 1 cut(s) 244
XbaI TCTAGA 1 cut(s) 47
XmaI CCCGGG 2 cut(s) 71, 90
XspI CTAG 2 cut(s) 48, 198
ZraI GACGTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.