Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009001.1

Orthogroup ID

OG0011269

Physical Location & Seq

Genomic Coordinates Forward (+)

66213 .. 67450

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009001.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgggctcccccacattcttcaataaacacttcatgagtgatattgatcacgacgattacaacaacaccaccacgagctccaccccggaaaacagctccggctcccctcctcccgccttcaacgacgtcgtctactccaagatcgcttcgtctcccaagaaaagtagccggcgggctgtacagaagagagtggtgtcaatccctatcaaggaaaacagtaacacaaacactcccccgccgtcggattcatgggcctggagaaagtacggccagaaacccatcaagggctcaccttaccccagagggtattacaggtgcagtagctcaaaggggtgtccagcgaggaagcaggtggagagaagccgcgtggaccccaccacgctggtgatcacctactcgtcagagcacaaccacccctggccggcttctagaagccaccacggcacgaaacccgggatcaaagccgagacccgggaggaggagacggcggccggccagccggaacccgacccggaggagaggctgttcgcggcggatctgggcggcggcgacgaggagtcgtcgctggtgatcatcccgagcgtcgtggacgagttcgggtggttcgcggacatggaaacgacgtcgtcgcgggtgctggagagccccattttcgctgagagcggcggtggggccgacacggatgacgtggcggggatggtgttcccgatgggcgaagaggacgagtcgctattcgccgatctgggcgagttgcccgagtgctcgcttgtgtttcggcaccgccgtgtgggaggaggaggtgtgggaccacaagctcagatctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

275

Amino Acids

29.94

Weight (kDa)

5.24

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29280
fragaria_vesca	FvH4_3g07360 FvH4_3g07360
malus_domestica	MD05G1295700.v1.1 MD10G1275800.v1.1
prunus_persica	Prupe.4G066400_v2.0.a1
pyrus_communis	pycom05g27470 pycom10g23050
rosa_chinensis	RchiOBHm_Chr5g0011581
rosa_laevigata	RLG00000031844
rosa_multiflora	Rmu_sc0009001.1_g000011 Rmu_sc0040970.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064910
rosa_rugosa	Rorug04G0457800 Rorug04G0457800
rosa_samantha	Rh5AG089500 Rh5BG084800 Rh5CG098900 Rh5DG084800
rosa_wichuraiana	Rw5G007780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	340
AatII	GACGTC	2 cut(s)	129, 626
Acc36I	ACCTGC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	777
AccBSI	CCGCTC	1 cut(s)	663
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	4 cut(s)	366, 530, 608, 631
AclWI	GGATC	2 cut(s)	464, 543
AcoI	YGGCCR	4 cut(s)	268, 419, 489, 493
AcyI	GRCGYC	2 cut(s)	126, 623
AfaI	GTAC	2 cut(s)	180, 266
AfiI	CCNNNNNNNGG	7 cut(s)	208, 241, 284, 421, 471, 478, 787
AgsI	TTSAA	2 cut(s)	22, 121
AhdI	GACNNNNNGTC	1 cut(s)	556
AjiI	CACGTC	1 cut(s)	688
AjnI	CCWGG	2 cut(s)	254, 416
AleI	CACNNNNGTG	2 cut(s)	383, 783
AloI	GAACNNNNNNTCC	2 cut(s)	509, 541
AluBI	AGCT	4 cut(s)	78, 96, 324, 815
AluI	AGCT	4 cut(s)	78, 96, 324, 815
Alw21I	GWGCWC	3 cut(s)	80, 408, 764
Alw26I	GTCTC	3 cut(s)	156, 461, 476
AlwI	GGATC	2 cut(s)	464, 543
Ama87I	CYCGRG	4 cut(s)	452, 471, 577, 755
AoxI	GGCC	6 cut(s)	252, 268, 419, 489, 493, 672
AspS9I	GGNCC	4 cut(s)	252, 370, 672, 806
AsuC2I	CCSGG	6 cut(s)	86, 453, 454, 472, 473, 512
AsuHPI	GGTGA	4 cut(s)	282, 382, 397, 580
AvaI	CYCGRG	4 cut(s)	452, 471, 577, 755
AvaII	GGWCC	2 cut(s)	370, 806
BanI	GGYRCC	1 cut(s)	777
BanII	GRGCYC	4 cut(s)	8, 80, 290, 647
BauI	CACGAG	1 cut(s)	73
Bbv12I	GWGCWC	3 cut(s)	80, 408, 764
BccI	CCATC	3 cut(s)	287, 691, 703
BceAI	ACGGC	5 cut(s)	223, 283, 457, 501, 768
BciT130I	CCWGG	2 cut(s)	256, 418
BclI	TGATCA	3 cut(s)	46, 387, 570
BcnI	CCSGG	6 cut(s)	86, 453, 454, 472, 473, 512
BcoDI	GTCTC	3 cut(s)	156, 461, 476
BfaI	CTAG	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	441
BglII	AGATCT	1 cut(s)	819
BisI	GCNGC	6 cut(s)	364, 489, 531, 544, 547, 664
BlsI	GCNGC	6 cut(s)	365, 490, 532, 545, 548, 665
Bme1390I	CCNGG	8 cut(s)	86, 256, 418, 453, 454, 472, 473, 512
Bme18I	GGWCC	2 cut(s)	370, 806
BmeRI	GACNNNNNGTC	1 cut(s)	556
BmeT110I	CYCGRG	4 cut(s)	452, 471, 577, 755
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	4 cut(s)	252, 370, 672, 806
BmiI	GGNNCC	7 cut(s)	7, 103, 372, 504, 673, 779, 807
BmrFI	CCNGG	8 cut(s)	86, 256, 418, 453, 454, 472, 473, 512
BpmI	CTGGAG	2 cut(s)	277, 659
BpuMI	CCSGG	6 cut(s)	86, 453, 454, 472, 473, 512
BsaBI	GATNNNNATC	1 cut(s)	45
BsaHI	GRCGYC	2 cut(s)	126, 623
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	5 cut(s)	84, 416, 439, 452, 471
BsaXI	ACNNNNNCTCC	6 cut(s)	214, 244, 509, 539, 786, 816
Bsc4I	CCNNNNNNNGG	7 cut(s)	208, 241, 284, 421, 471, 478, 787
Bse118I	RCCGGY	3 cut(s)	168, 421, 491
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	256, 418
BseDI	CCNNGG	5 cut(s)	84, 416, 439, 452, 471
BseGI	GGATG	3 cut(s)	573, 688, 702
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	7 cut(s)	208, 241, 284, 421, 471, 478, 787
BseMII	CTCAG	1 cut(s)	648
BseRI	GAGGAG	7 cut(s)	99, 491, 494, 530, 569, 807, 810
BseX3I	CGGCCG	1 cut(s)	489
BsgI	GTGCAG	1 cut(s)	337
Bsh1236I	CGCG	4 cut(s)	366, 530, 608, 631
Bsh1285I	CGRYCG	1 cut(s)	492
BshFI	GGCC	6 cut(s)	254, 270, 421, 491, 495, 674
BshNI	GGYRCC	1 cut(s)	777
BsiEI	CGRYCG	1 cut(s)	492
BsiHKAI	GWGCWC	3 cut(s)	80, 408, 764
BsiHKCI	CYCGRG	4 cut(s)	452, 471, 577, 755
BsiSI	CCGG	9 cut(s)	86, 99, 169, 422, 453, 472, 492, 500, 512
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	7 cut(s)	208, 241, 284, 421, 471, 478, 787
BsmAI	GTCTC	3 cut(s)	156, 461, 476
BsmBI	CGTCTC	2 cut(s)	156, 476
BsmFI	GGGAC	1 cut(s)	819
BsnI	GGCC	6 cut(s)	254, 270, 421, 491, 495, 674
Bso31I	GGTCTC	1 cut(s)	461
BsoBI	CYCGRG	4 cut(s)	452, 471, 577, 755
Bsp1286I	GDGCHC	6 cut(s)	8, 80, 290, 408, 647, 764
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	8 cut(s)	46, 141, 387, 456, 535, 570, 739, 819
BspANI	GGCC	6 cut(s)	254, 270, 421, 491, 495, 674
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	4 cut(s)	366, 530, 608, 631
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	7 cut(s)	7, 103, 372, 504, 673, 779, 807
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	2 cut(s)	464, 543
BspT107I	GGYRCC	1 cut(s)	777
BspTNI	GGTCTC	1 cut(s)	461
BsrBI	CCGCTC	1 cut(s)	663
BsrFI	RCCGGY	3 cut(s)	168, 421, 491
BsrGI	TGTACA	1 cut(s)	178
BssAI	RCCGGY	3 cut(s)	168, 421, 491
BssECI	CCNNGG	5 cut(s)	84, 416, 439, 452, 471
BssMI	GATC	8 cut(s)	46, 141, 387, 456, 535, 570, 739, 819
BssNI	GRCGYC	2 cut(s)	126, 623
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	2 cut(s)	256, 418
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	2 cut(s)	179, 711
BstACI	GRCGYC	2 cut(s)	126, 623
BstAUI	TGTACA	1 cut(s)	178
BstC8I	GCNNGC	6 cut(s)	170, 174, 423, 493, 497, 764
BstDEI	CTNAG	2 cut(s)	657, 816
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	573, 688, 702
BstFNI	CGCG	4 cut(s)	366, 530, 608, 631
BstKTI	GATC	8 cut(s)	49, 144, 390, 459, 538, 573, 742, 822
BstMAI	GTCTC	3 cut(s)	156, 461, 476
BstMBI	GATC	8 cut(s)	46, 141, 387, 456, 535, 570, 739, 819
BstMCI	CGRYCG	1 cut(s)	492
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstNI	CCWGG	2 cut(s)	256, 418
BstSCI	CCNGG	8 cut(s)	84, 254, 416, 451, 452, 470, 471, 510
BstUI	CGCG	4 cut(s)	366, 530, 608, 631
BstX2I	RGATCY	2 cut(s)	535, 819
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	2 cut(s)	535, 819
BstZI	CGGCCG	1 cut(s)	489
BsuRI	GGCC	6 cut(s)	254, 270, 421, 491, 495, 674
BtgI	CCRYGG	1 cut(s)	439
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	3 cut(s)	573, 688, 702
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	6 cut(s)	170, 174, 423, 493, 497, 764
CciI	TCATGA	1 cut(s)	33
Cfr10I	RCCGGY	3 cut(s)	168, 421, 491
Cfr13I	GGNCC	4 cut(s)	252, 370, 672, 806
Cfr9I	CCCGGG	2 cut(s)	452, 471
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	179, 265
CviAII	CATG	3 cut(s)	34, 249, 613
CviQI	GTAC	2 cut(s)	179, 265
DdeI	CTNAG	2 cut(s)	657, 816
DpnI	GATC	8 cut(s)	48, 143, 389, 458, 537, 572, 741, 821
DpnII	GATC	8 cut(s)	46, 141, 387, 456, 535, 570, 739, 819
DriI	GACNNNNNGTC	1 cut(s)	556
EaeI	YGGCCR	4 cut(s)	268, 419, 489, 493
EagI	CGGCCG	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	179, 711
Eam1105I	GACNNNNNGTC	1 cut(s)	556
EarI	CTCTTC	2 cut(s)	179, 711
EciI	GGCGGA	1 cut(s)	548
Ecl136II	GAGCTC	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	489
Eco24I	GRGCYC	4 cut(s)	8, 80, 290, 647
Eco31I	GGTCTC	1 cut(s)	461
Eco47I	GGWCC	2 cut(s)	370, 806
Eco52I	CGGCCG	1 cut(s)	489
Eco53kI	GAGCTC	1 cut(s)	78
Eco88I	CYCGRG	4 cut(s)	452, 471, 577, 755
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	254, 416
EcoT38I	GRGCYC	4 cut(s)	8, 80, 290, 647
Esp3I	CGTCTC	2 cut(s)	156, 476
FaeI	CATG	3 cut(s)	37, 252, 616
FaiI	YATR	3 cut(s)	35, 250, 614
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	3 cut(s)	33, 248, 612
FauI	CCCGC	5 cut(s)	121, 165, 243, 624, 685
FbaI	TGATCA	3 cut(s)	46, 387, 570
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	6 cut(s)	364, 489, 531, 544, 547, 664
FokI	GGATG	3 cut(s)	560, 695, 709
FriOI	GRGCYC	4 cut(s)	8, 80, 290, 647
FseI	GGCCGGCC	1 cut(s)	495
Fsp4HI	GCNGC	6 cut(s)	364, 489, 531, 544, 547, 664
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	6 cut(s)	364, 489, 531, 544, 547, 664
GsuI	CTGGAG	2 cut(s)	277, 659
HaeIII	GGCC	6 cut(s)	254, 270, 421, 491, 495, 674
HapII	CCGG	9 cut(s)	86, 99, 169, 422, 453, 472, 492, 500, 512
HgaI	GACGC	1 cut(s)	571
Hin1I	GRCGYC	2 cut(s)	126, 623
Hin1II	CATG	3 cut(s)	37, 252, 616
HinfI	GANTC	3 cut(s)	245, 557, 725
HpaII	CCGG	9 cut(s)	86, 99, 169, 422, 453, 472, 492, 500, 512
HphI	GGTGA	4 cut(s)	282, 382, 397, 580
Hpy166II	GTNNAC	3 cut(s)	133, 370, 589
Hpy188I	TCNGA	3 cut(s)	244, 403, 819
Hpy188III	TCNNGA	5 cut(s)	34, 50, 429, 577, 706
Hpy8I	GTNNAC	3 cut(s)	133, 370, 589
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	3 cut(s)	126, 623, 687
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	2 cut(s)	657, 816
HpySE526I	ACGT	3 cut(s)	126, 623, 687
Hsp92I	GRCGYC	2 cut(s)	126, 623
Hsp92II	CATG	3 cut(s)	37, 252, 616
KroI	GCCGGC	3 cut(s)	168, 421, 491
KroNI	GCCGGC	3 cut(s)	170, 423, 493
Ksp22I	TGATCA	3 cut(s)	46, 387, 570
Kzo9I	GATC	8 cut(s)	46, 141, 387, 456, 535, 570, 739, 819
LmnI	GCTCC	4 cut(s)	11, 83, 101, 107
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	3 cut(s)	126, 623, 687
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	8 cut(s)	48, 143, 389, 458, 537, 572, 741, 821
MbiI	CCGCTC	1 cut(s)	663
MboI	GATC	8 cut(s)	46, 141, 387, 456, 535, 570, 739, 819
MboII	GAAGA	3 cut(s)	10, 196, 728
MflI	RGATCY	2 cut(s)	535, 819
MhlI	GDGCHC	6 cut(s)	8, 80, 290, 408, 647, 764
MlyI	GAGTC	2 cut(s)	566, 734
MmeI	TCCRAC	1 cut(s)	222
MroNI	GCCGGC	3 cut(s)	168, 421, 491
MslI	CAYNNNNRTG	2 cut(s)	383, 783
MspI	CCGG	9 cut(s)	86, 99, 169, 422, 453, 472, 492, 500, 512
MspR9I	CCNGG	8 cut(s)	86, 256, 418, 453, 454, 472, 473, 512
MvaI	CCWGG	2 cut(s)	256, 418
MvnI	CGCG	4 cut(s)	366, 530, 608, 631
MwoI	GCNNNNNNNGC	1 cut(s)	441
NaeI	GCCGGC	3 cut(s)	170, 423, 493
NciI	CCSGG	6 cut(s)	86, 453, 454, 472, 473, 512
NdeII	GATC	8 cut(s)	46, 141, 387, 456, 535, 570, 739, 819
NgoMIV	GCCGGC	3 cut(s)	168, 421, 491
NlaIII	CATG	3 cut(s)	37, 252, 616
NlaIV	GGNNCC	7 cut(s)	7, 103, 372, 504, 673, 779, 807
NmeAIII	GCCGAG	1 cut(s)	490
OliI	CACNNNNGTG	2 cut(s)	383, 783
PagI	TCATGA	1 cut(s)	33
PaqCI	CACCTGC	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	781
PdiI	GCCGGC	3 cut(s)	170, 423, 493
PfeI	GAWTC	1 cut(s)	245
PflFI	GACNNNGTC	2 cut(s)	128, 625
PkrI	GCNGC	6 cut(s)	365, 490, 532, 545, 548, 665
PleI	GAGTC	2 cut(s)	565, 733
PpsI	GAGTC	2 cut(s)	565, 733
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	254, 416
PspGI	CCWGG	2 cut(s)	254, 416
PspN4I	GGNNCC	7 cut(s)	7, 103, 372, 504, 673, 779, 807
PspPI	GGNCC	4 cut(s)	252, 370, 672, 806
PsuI	RGATCY	2 cut(s)	535, 819
PsyI	GACNNNGTC	2 cut(s)	128, 625
RigI	GGCCGGCC	1 cut(s)	495
RsaI	GTAC	2 cut(s)	180, 266
RsaNI	GTAC	2 cut(s)	179, 265
RseI	CAYNNNNRTG	2 cut(s)	383, 783
SacI	GAGCTC	1 cut(s)	80
SatI	GCNGC	6 cut(s)	364, 489, 531, 544, 547, 664
Sau3AI	GATC	8 cut(s)	46, 141, 387, 456, 535, 570, 739, 819
Sau96I	GGNCC	4 cut(s)	252, 370, 672, 806
SchI	GAGTC	2 cut(s)	566, 734
ScrFI	CCNGG	8 cut(s)	86, 256, 418, 453, 454, 472, 473, 512
SduI	GDGCHC	6 cut(s)	8, 80, 290, 408, 647, 764
SinI	GGWCC	2 cut(s)	370, 806
SmaI	CCCGGG	2 cut(s)	454, 473
SmiMI	CAYNNNNRTG	2 cut(s)	383, 783
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	8 cut(s)	84, 254, 416, 451, 452, 470, 471, 510
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	3 cut(s)	129, 626, 690
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	6 cut(s)	366, 491, 533, 546, 549, 666
TfiI	GAWTC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	22, 237
TspGWI	ACGGA	1 cut(s)	695
TspMI	CCCGGG	2 cut(s)	452, 471
Tth111I	GACNNNGTC	2 cut(s)	128, 625
VpaK11BI	GGWCC	2 cut(s)	370, 806
XbaI	TCTAGA	1 cut(s)	428
XmaI	CCCGGG	2 cut(s)	452, 471
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	429
ZraI	GACGTC	2 cut(s)	127, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.