Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Reverse (-)

10545087 .. 10545906

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCCCGAATCAACGAATCTCAATGCGTCTTTGTGAAGACTAGTATTGATACTCGTATGGGGCTTCTCCTTGACAGTGATGATAGTGTATCTGCTTTCAAAGACAAAATCTGCAAAGAACATGAACAGTGTTTCCCAAGTGTTGGCAACATCACTATTTCTGCCTTGAAGGTTAACTTGGGTGGTAATGATTATCACTTGTCGGATTGTATGATTTTGAAAACCGCTCTTCAAGGCCTCAGTAACAAGGACTGGTTTCTATCTGTCCACCTCGTACGTGTCGAGGAGAAGGAAATGAGAAAAAGTAAATCAGAAAGTGACAACAAAAGTAGAAAGAAACCCTCCTCATCAAAAGCAAAAGGCCTTGAAAGTGGTGAGGGAAATGTCACTAGGATGGGAGAGAATCAGCAAATTTGTGATGCAGATCAAGAGGAACCTGTAGATGGAGATGAAGAAATGAAGAAGACAATAGCCAAAGCGTGGACGGATGCTAGGTCAGGCAAAGCAGCAGATCCTTTAAAAGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

176

Amino Acids

19.46

Weight (kDa)

5.98

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	143, 480
AccBSI	CCGCTC	1 cut(s)	227
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	1 cut(s)	411
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	4 cut(s)	143, 443, 480, 521
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	5 cut(s)	100, 169, 220, 233, 368
AhlI	ACTAGT	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	2 cut(s)	235, 361
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	44, 470
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	2 cut(s)	388, 437
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	3 cut(s)	42, 390, 492
BfmI	CTRYAG	1 cut(s)	438
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	435
BmsI	GCATC	2 cut(s)	409, 478
BpiI	GAAGAC	2 cut(s)	44, 470
BsaAI	YACGTR	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 443, 480, 521
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	423
BseGI	GGATG	2 cut(s)	399, 493
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	143, 443, 480, 521
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	299, 334
BseXI	GCAGC	1 cut(s)	518
BshFI	GGCC	2 cut(s)	237, 363
BsiWI	CGTACG	1 cut(s)	274
BslI	CCNNNNNNNGG	4 cut(s)	143, 443, 480, 521
BsnI	GGCC	2 cut(s)	237, 363
Bsp143I	GATC	2 cut(s)	424, 511
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	237, 363
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	435
BspPI	GGATC	1 cut(s)	506
BspQI	GCTCTTC	1 cut(s)	234
BsrBI	CCGCTC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	424, 511
Bst4CI	ACNGT	2 cut(s)	77, 129
Bst6I	CTCTTC	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	399, 493
BstKTI	GATC	2 cut(s)	427, 514
BstMBI	GATC	2 cut(s)	424, 511
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	518
BstV2I	GAAGAC	2 cut(s)	44, 470
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	237, 363
BtsCI	GGATG	2 cut(s)	399, 493
BtsIMutI	CAGTG	2 cut(s)	82, 134
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	4 cut(s)	64, 237, 363, 473
CviKI_1	RGCY	4 cut(s)	64, 237, 363, 473
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	426, 513
DpnII	GATC	2 cut(s)	424, 511
DraI	TTTAAA	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco147I	AGGCCT	2 cut(s)	237, 363
EcoNI	CCTNNNNNAGG	1 cut(s)	519
FaeI	CATG	1 cut(s)	125
FaiI	YATR	3 cut(s)	59, 123, 212
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	2 cut(s)	406, 500
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	3 cut(s)	42, 390, 492
GluI	GCNGC	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	237, 363
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	9, 17, 403
HpaI	GTTAAC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	175, 268, 483
Hpy188I	TCNGA	2 cut(s)	205, 313
Hpy188III	TCNNGA	2 cut(s)	6, 428
Hpy8I	GTNNAC	3 cut(s)	175, 268, 483
HpyAV	CCTTC	2 cut(s)	163, 283
HpyCH4III	ACNGT	2 cut(s)	77, 129
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	114, 422
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	1 cut(s)	125
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	424, 511
LguI	GCTCTTC	1 cut(s)	234
LpnPI	CCDG	3 cut(s)	238, 450, 483
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	2 cut(s)	409, 478
MaeI	CTAG	3 cut(s)	42, 390, 492
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	3 cut(s)	242, 317, 385
MalI	GATC	2 cut(s)	426, 513
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	2 cut(s)	424, 511
MboII	GAAGA	5 cut(s)	49, 221, 464, 472, 475
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	7 cut(s)	248, 277, 281, 352, 355, 370, 424
MseI	TTAA	2 cut(s)	174, 518
MslI	CAYNNNNRTG	1 cut(s)	392
NdeII	GATC	2 cut(s)	424, 511
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	2 cut(s)	317, 385
PceI	AGGCCT	2 cut(s)	237, 363
PciSI	GCTCTTC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	9, 17, 403
Pfl23II	CGTACG	1 cut(s)	274
PflMI	CCANNNNNTGG	2 cut(s)	143, 480
PkrI	GCNGC	1 cut(s)	508
Ppu21I	YACGTR	1 cut(s)	278
PspLI	CGTACG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	174, 518
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	2 cut(s)	424, 511
SetI	ASST	5 cut(s)	174, 273, 280, 439, 497
SfaNI	GCATC	2 cut(s)	409, 478
SfcI	CTRYAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	392
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	1 cut(s)	411
SseBI	AGGCCT	2 cut(s)	237, 363
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	3 cut(s)	42, 390, 492
StuI	AGGCCT	2 cut(s)	237, 363
TaaI	ACNGT	2 cut(s)	77, 129
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	282
TasI	AATT	1 cut(s)	411
TfiI	GAWTC	3 cut(s)	9, 17, 403
Tru1I	TTAA	2 cut(s)	174, 518
Tru9I	TTAA	2 cut(s)	174, 518
TscAI	CASTG	2 cut(s)	82, 134
TseFI	GTSAC	2 cut(s)	317, 385
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	2 cut(s)	317, 385
TspDTI	ATGAA	3 cut(s)	138, 465, 473
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	2 cut(s)	82, 134
Van91I	CCANNNNNTGG	2 cut(s)	143, 480
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	1 cut(s)	411
XspI	CTAG	3 cut(s)	42, 390, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.