Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Forward (+)

3221289 .. 3223464

Gene Structure 2176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAGCAGAAGAAGAAGTGGCGCTAGATTTGGAGGAGCTCCGGCATATCCAGAGCATTGCAAAGCGACCCCGTATCCTCAATCTCATCTCCTCCGAAATCAGCAGTTTAGAAAAGTTGTCAAAAGAGGCTGCTCCTAAACCTACGTTGACAACTCCTACTCCTATTTCTACGGGCGTGAAGGTGCCTTCCACTCCAGCTCTGAATTATGTAACACTCGGGTCATTCAGCTGGGAGCAAGATACTGAGAAAGTCAAGATATATATTTTTCTGGAGGGAGTTGATCAGGAGAAAATGGAGACTGAGATTAAGCCTACTTCCATTGATATCAAATTGCATGATGTCCAAGGAAAGAACTACAGATGTGCTATACCTAAACTCCATAACAAGGTTGTGCCAGAGAAGTGTAAGGTGCTAGTTAAGCCTACGAGGGTCGTGATCACATTGATTAAAGCTTCAAAGGAGAACTGGCTGGATCTGCATTTCAAGGAGGACAAGCTAAAGCCAAATCTGGATAAAGAGAAAGATCCAATGGCAGGAATTATGGACTTGATGAAGAATATGTACAACGAAGGGGATGAAGAAATGAAGCGAACAATTGCCAAAGCATGGACTGATGCGAGATCTGGAAAAACAGCTGATCCTCTGAAGGGGTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

CS Siah-Interact_N

Protein Analysis

221

Amino Acids

24.87

Weight (kDa)

8.34

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	75 - 151	2.1e-16	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	609
AclWI	GGATC	3 cut(s)	483, 521, 635
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	4 cut(s)	388, 536, 609, 650
AgsI	TTSAA	2 cut(s)	459, 487
AluBI	AGCT	6 cut(s)	40, 200, 231, 455, 499, 638
AluI	AGCT	6 cut(s)	40, 200, 231, 455, 499, 638
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	483, 521, 635
Ama87I	CYCGRG	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	5, 131
AspLEI	GCGC	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	548, 580
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	17, 118
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	2 cut(s)	283, 438
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	26, 416
BfmI	CTRYAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	623
BisI	GCNGC	2 cut(s)	6, 132
BlsI	GCNGC	2 cut(s)	7, 133
BmeT110I	CYCGRG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	1 cut(s)	607
BpmI	CTGGAG	2 cut(s)	180, 293
BsaJI	CCNNGG	1 cut(s)	346
BsaXI	ACNNNNNCTCC	4 cut(s)	145, 175, 363, 393
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 536, 609, 650
Bse1I	ACTGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	4 cut(s)	388, 536, 609, 650
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	237, 294
BseNI	ACTGG	1 cut(s)	473
BseRI	GAGGAG	2 cut(s)	50, 82
BseXI	GCAGC	2 cut(s)	17, 118
BseYI	CCCAGC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	4 cut(s)	388, 536, 609, 650
BsmAI	GTCTC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	6 cut(s)	283, 438, 475, 526, 623, 640
BspCNI	CTCAG	2 cut(s)	238, 295
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	3 cut(s)	483, 521, 635
BspT107I	GGYRCC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	6 cut(s)	283, 438, 475, 526, 623, 640
BssT1I	CCWWGG	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	564
BstDEI	CTNAG	2 cut(s)	246, 303
BstF5I	GGATG	1 cut(s)	583
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	6 cut(s)	286, 441, 478, 529, 626, 643
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	6 cut(s)	283, 438, 475, 526, 623, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	421, 478
BstSFI	CTRYAG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	17, 118
BstX2I	RGATCY	3 cut(s)	475, 526, 623
BstYI	RGATCY	3 cut(s)	475, 526, 623
BsuI	GTATCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	583
CfoI	GCGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	2 cut(s)	338, 609
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	2 cut(s)	246, 303
DpnI	GATC	6 cut(s)	285, 440, 477, 528, 625, 642
DpnII	GATC	6 cut(s)	283, 438, 475, 526, 623, 640
DraI	TTTAAA	1 cut(s)	658
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	2 cut(s)	341, 612
FatI	CATG	2 cut(s)	337, 608
FbaI	TGATCA	2 cut(s)	283, 438
Fnu4HI	GCNGC	2 cut(s)	6, 132
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	6, 132
FspBI	CTAG	2 cut(s)	26, 416
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	6, 132
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	2 cut(s)	180, 293
HaeII	RGCGCY	1 cut(s)	26
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	341, 612
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	453
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	97, 204, 648
Hpy188III	TCNNGA	7 cut(s)	52, 256, 272, 287, 436, 512, 627
Hpy8I	GTNNAC	1 cut(s)	150
HpyAV	CCTTC	4 cut(s)	175, 198, 566, 643
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	62, 337, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	421, 478
HpyF3I	CTNAG	2 cut(s)	246, 303
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	341, 612
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	2 cut(s)	283, 438
Kzo9I	GATC	6 cut(s)	283, 438, 475, 526, 623, 640
LmnI	GCTCC	4 cut(s)	37, 45, 139, 235
Lsp1109I	GCAGC	2 cut(s)	17, 118
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	26, 416
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	6 cut(s)	285, 440, 477, 528, 625, 642
MboI	GATC	6 cut(s)	283, 438, 475, 526, 623, 640
MboII	GAAGA	4 cut(s)	23, 26, 568, 593
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	3 cut(s)	475, 526, 623
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	205, 332, 540, 597
MnlI	CCTC	8 cut(s)	28, 89, 103, 121, 268, 423, 484, 654
MseI	TTAA	4 cut(s)	309, 420, 450, 657
MspA1I	CMGCKG	2 cut(s)	231, 638
MspI	CCGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	421, 478
NdeII	GATC	6 cut(s)	283, 438, 475, 526, 623, 640
NlaIII	CATG	2 cut(s)	341, 612
NlaIV	GGNNCC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	609
PkrI	GCNGC	2 cut(s)	7, 133
Psp124BI	GAGCTC	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	186
PsuI	RGATCY	3 cut(s)	475, 526, 623
PvuII	CAGCTG	2 cut(s)	231, 638
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	4 cut(s)	309, 420, 450, 657
SatI	GCNGC	2 cut(s)	6, 132
Sau3AI	GATC	6 cut(s)	283, 438, 475, 526, 623, 640
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	358
Sse9I	AATT	4 cut(s)	205, 332, 540, 597
SspMI	CTAG	2 cut(s)	26, 416
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	346
TaiI	ACGT	1 cut(s)	149
TasI	AATT	4 cut(s)	205, 332, 540, 597
TatI	WGTACW	1 cut(s)	564
Tru1I	TTAA	4 cut(s)	309, 420, 450, 657
Tru9I	TTAA	4 cut(s)	309, 420, 450, 657
TseI	GCWGC	2 cut(s)	5, 131
TspDTI	ATGAA	3 cut(s)	569, 594, 602
Van91I	CCANNNNNTGG	1 cut(s)	609
XspI	CTAG	2 cut(s)	26, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.