Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Reverse (-)

3950260 .. 3953198

Gene Structure 2939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G081000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCAGACGAAGTGGCGCTAGATTTGGTGGAGCTCCGCCACCTTAAGAGCATTGCTACACGACCCCATATCATCAACTTCATTTCCTCTGCGATTCGCACTTTGGAAAAGATGCCACAAGGGGATGCTACTGCAGTTTCCACCCCTGCTCTGCTACATGACAAGCCTGTGCCATTCAGCTGGGACCAAGATAATGATAACGTCAAGTTATCAAATGAGGCTGCTACTTTGCCTATTCCAATTTTAGCTACAACTTGCACCCCTGCTCGGCATTATGAGATGCTTGGGTCATTCGGCTGGGAACAAAATAATATTGATGTCAAGATATATATATATCTGAAGGGAGTTGATCCGGAGAACATAGAGGCTGGCTTCTCGCCTTCGTCCTTTCACATCAAACTCCATGATGTTGAAGGAAAGAATTACAAATTTGCTATACCTGAACTGTACAAGGAGATTGTCCCAGGGAGGTGTAGGGTGATAACCAAGCCTGAAAAGGTTGTCATCACTTTGGTTAAGGCTTCAAGGGATTACTGGTTGGATTTGAAGTTCAAGGAGGAAAGGCCGATGCCAATGCCAAATTGGGATGAAGAACCAGATCCTTTGGCAGGATTCATGGGCATAATGAAGAATATGTACGAAGAAGGGGATCCAGAGATGAAAAGAACAGTTGCCAAAGCATGGACTGAAGCGAAATTCGGGAGAAACCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

CS Siah-Interact_N

Protein Analysis

238

Amino Acids

26.94

Weight (kDa)

5.59

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	681
AccIII	TCCGGA	1 cut(s)	352
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	4 cut(s)	344, 593, 644, 657
AcsI	RAATTY	2 cut(s)	428, 695
AcuI	CTGAAG	2 cut(s)	359, 708
AfaI	GTAC	2 cut(s)	449, 638
AfiI	CCNNNNNNNGG	3 cut(s)	267, 608, 681
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	413, 525, 547, 553
AjnI	CCWGG	1 cut(s)	463
AloI	GAACNNNNNNTCC	2 cut(s)	533, 565
AluBI	AGCT	3 cut(s)	34, 180, 248
AluI	AGCT	3 cut(s)	34, 180, 248
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	4 cut(s)	344, 593, 644, 657
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	428, 695
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	36
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BciT130I	CCWGG	1 cut(s)	465
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	20
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	185, 651
BmrFI	CCNGG	1 cut(s)	465
BmsI	GCATC	4 cut(s)	102, 115, 270, 558
BsaJI	CCNNGG	2 cut(s)	463, 464
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	3 cut(s)	267, 608, 681
Bse1I	ACTGG	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	463, 464
BseGI	GGATG	2 cut(s)	130, 592
BseLI	CCNNNNNNNGG	3 cut(s)	267, 608, 681
BseMI	GCAATG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	2 cut(s)	180, 297
BshFI	GGCC	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	2 cut(s)	197, 446
BslI	CCNNNNNNNGG	3 cut(s)	267, 608, 681
BsmFI	GGGAC	2 cut(s)	197, 446
BsnI	GGCC	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	349, 598, 649
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	565
BspEI	TCCGGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	185, 651
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	4 cut(s)	344, 593, 644, 657
BspTI	CTTAAG	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	463, 464
BssMI	GATC	3 cut(s)	349, 598, 649
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	447, 670
BstAFI	CTTAAG	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	130, 592
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	352, 601, 652
BstMBI	GATC	3 cut(s)	349, 598, 649
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	2 cut(s)	598, 649
BstXI	CCANNNNNNTGG	1 cut(s)	180
BstYI	RGATCY	2 cut(s)	598, 649
BsuRI	GGCC	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	130, 592
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	448, 637
CviAII	CATG	4 cut(s)	158, 404, 616, 681
CviQI	GTAC	2 cut(s)	448, 637
DpnI	GATC	3 cut(s)	351, 600, 651
DpnII	GATC	3 cut(s)	349, 598, 649
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	2 cut(s)	359, 708
EcoICRI	GAGCTC	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	4 cut(s)	161, 407, 619, 684
FaqI	GGGAC	2 cut(s)	197, 446
FatI	CATG	4 cut(s)	157, 403, 615, 680
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	137, 599
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	2 cut(s)	184, 301
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	565
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	4 cut(s)	161, 407, 619, 684
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	2 cut(s)	94, 612
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	490
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	4 cut(s)	322, 353, 653, 700
HpyAV	CCTTC	4 cut(s)	334, 390, 407, 638
HpyCH4III	ACNGT	2 cut(s)	447, 670
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	134, 258
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	161, 407, 619, 684
HspAI	GCGC	1 cut(s)	17
Kpn2I	TCCGGA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	349, 598, 649
LmnI	GCTCC	2 cut(s)	31, 39
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	4 cut(s)	102, 115, 270, 558
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	201
MalI	GATC	3 cut(s)	351, 600, 651
MboI	GATC	3 cut(s)	349, 598, 649
MboII	GAAGA	3 cut(s)	602, 640, 653
MflI	RGATCY	2 cut(s)	598, 649
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	5 cut(s)	240, 421, 428, 580, 695
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	5 cut(s)	97, 211, 358, 462, 550
MroI	TCCGGA	1 cut(s)	352
MseI	TTAA	2 cut(s)	45, 516
MspA1I	CMGCKG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	465
NdeII	GATC	3 cut(s)	349, 598, 649
NlaIII	CATG	4 cut(s)	161, 407, 619, 684
NlaIV	GGNNCC	2 cut(s)	185, 651
NmeAIII	GCCGAG	1 cut(s)	247
PasI	CCCWGGG	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	94, 612
PflMI	CCANNNNNTGG	1 cut(s)	681
PkrI	GCNGC	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	2 cut(s)	180, 297
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	185, 651
PspPI	GGNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	598, 649
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	2 cut(s)	449, 638
RsaNI	GTAC	2 cut(s)	448, 637
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	45, 516
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	3 cut(s)	349, 598, 649
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	8 cut(s)	36, 45, 182, 204, 250, 442, 473, 501
SfaNI	GCATC	4 cut(s)	102, 115, 270, 558
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	240, 421, 428, 580, 695
SsiI	CCGC	1 cut(s)	37
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	447, 670
TaiI	ACGT	1 cut(s)	204
TasI	AATT	5 cut(s)	240, 421, 428, 580, 695
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	2 cut(s)	94, 612
Tru1I	TTAA	2 cut(s)	45, 516
Tru9I	TTAA	2 cut(s)	45, 516
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	5 cut(s)	70, 603, 604, 641, 674
Van91I	CCANNNNNTGG	1 cut(s)	681
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	2 cut(s)	428, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.