Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Reverse (-)

10077374 .. 10079235

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG108000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCAGCAGAAGAAGAAGTGGCGCTAGATTTGGAGGAGCTCCGCCGTATCCAGAGCATTGCAAAACGACCCCGTATTCTCAATCTCATCTCCTCTGAAATCGGCAATTTGGAAAAGTTGTCAAAAGAGGCTGCTCCTAAACCTACCTTGCCAACTCCAACTCCAACTCCAATTTCTACGGCAGTGAAGGTGCCTTCCACCCCATCTCTGAATTATGTTACACTTGGGTCATTCAGCTGGGAGCAAGATACTGATAAAGTGAAGATATATATATTTTTAGAGGGAGTTGATCAGGAGAAAATGGAGACTGAGATCAAGCCTACTTCCATTGATATCAAATTGCATGATGTCCAAGGAAAGAACTACAGATGTGCTATACCTAAACTCCATAGCCAGATTGTTCCAGAGAAGTGTAAGGTGCTAGTTAAGCCTACAAGGGTCATGATTACATTGATTAAAGCTTCAAAGGGGAACTGGCTGGATCTGCATTTCAAGGAGGACAAGCTAAAGCCGAATTTGGATAAAGAGAAGGATCCTATGGCAGGAATCATGGACTTGATGAAGAATATGTACAATGAAGGGGATGAAGAAATGAAGCGAACAATAGCCAAAGCATGGACCGATGCGAGATCTGGAAAAACAGCCGATCCACTGAAGGGCTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

CS Siah-Interact_N

Protein Analysis

222

Amino Acids

25.04

Weight (kDa)

8.66

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	77 - 153	2.6e-16	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	615
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	4 cut(s)	489, 527, 540, 641
AcsI	RAATTY	1 cut(s)	514
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	3 cut(s)	542, 615, 656
AgsI	TTSAA	2 cut(s)	465, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	4 cut(s)	40, 237, 461, 505
AluI	AGCT	4 cut(s)	40, 237, 461, 505
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	4 cut(s)	489, 527, 540, 641
ApeKI	GCWGC	2 cut(s)	5, 131
ApoI	RAATTY	1 cut(s)	514
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	618
AvaII	GGWCC	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	17, 118
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	2 cut(s)	30, 195
BciVI	GTATCC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	2 cut(s)	26, 422
BfmI	CTRYAG	1 cut(s)	364
BfoI	RGCGCY	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	629
BisI	GCNGC	2 cut(s)	6, 132
BlsI	GCNGC	2 cut(s)	7, 133
Bme18I	GGWCC	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	618
BmiI	GGNNCC	2 cut(s)	192, 534
BmsI	GCATC	1 cut(s)	613
BsaJI	CCNNGG	1 cut(s)	352
BsaXI	ACNNNNNCTCC	6 cut(s)	145, 151, 175, 181, 369, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	542, 615, 656
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	3 cut(s)	542, 615, 656
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	2 cut(s)	50, 82
BseXI	GCAGC	2 cut(s)	17, 118
BseYI	CCCAGC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	542, 615, 656
BsmAI	GTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	6 cut(s)	289, 312, 481, 532, 629, 646
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	192, 534
BspPI	GGATC	4 cut(s)	489, 527, 540, 641
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	6 cut(s)	289, 312, 481, 532, 629, 646
BssT1I	CCWWGG	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	570
BstDEI	CTNAG	1 cut(s)	309
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstF5I	GGATG	1 cut(s)	589
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	6 cut(s)	292, 315, 484, 535, 632, 649
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	6 cut(s)	289, 312, 481, 532, 629, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 484
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	17, 118
BstX2I	RGATCY	3 cut(s)	481, 532, 629
BstYI	RGATCY	3 cut(s)	481, 532, 629
BsuI	GTATCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	189, 650
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	4 cut(s)	344, 442, 550, 615
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	6 cut(s)	291, 314, 483, 534, 631, 648
DpnII	GATC	6 cut(s)	289, 312, 481, 532, 629, 646
DraI	TTTAAA	1 cut(s)	664
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	618
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	4 cut(s)	347, 445, 553, 618
FatI	CATG	4 cut(s)	343, 441, 549, 614
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	6, 132
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	6, 132
FspBI	CTAG	2 cut(s)	26, 422
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	6, 132
GsaI	CCCAGC	1 cut(s)	241
HaeII	RGCGCY	1 cut(s)	26
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	4 cut(s)	347, 445, 553, 618
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	1 cut(s)	546
Hpy188I	TCNGA	2 cut(s)	97, 210
Hpy188III	TCNNGA	5 cut(s)	52, 293, 404, 442, 633
HpyAV	CCTTC	5 cut(s)	181, 204, 523, 572, 649
HpyCH4V	TGCA	3 cut(s)	62, 343, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 484
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	347, 445, 553, 618
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	6 cut(s)	289, 312, 481, 532, 629, 646
LmnI	GCTCC	4 cut(s)	37, 45, 139, 241
LpnPI	CCDG	9 cut(s)	65, 223, 278, 407, 417, 460, 464, 528, 618
Lsp1109I	GCAGC	2 cut(s)	17, 118
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	2 cut(s)	26, 422
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	6 cut(s)	291, 314, 483, 534, 631, 648
MboI	GATC	6 cut(s)	289, 312, 481, 532, 629, 646
MboII	GAAGA	5 cut(s)	23, 26, 274, 574, 599
MflI	RGATCY	3 cut(s)	481, 532, 629
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	5 cut(s)	106, 171, 211, 338, 514
MmeI	TCCRAC	2 cut(s)	182, 188
MnlI	CCTC	5 cut(s)	28, 103, 121, 274, 490
MseI	TTAA	3 cut(s)	426, 456, 663
MspA1I	CMGCKG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	427, 484
NdeII	GATC	6 cut(s)	289, 312, 481, 532, 629, 646
NlaIII	CATG	4 cut(s)	347, 445, 553, 618
NlaIV	GGNNCC	2 cut(s)	192, 534
PagI	TCATGA	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	546
PflMI	CCANNNNNTGG	1 cut(s)	615
PkrI	GCNGC	2 cut(s)	7, 133
Psp124BI	GAGCTC	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	192, 534
PspPI	GGNCC	1 cut(s)	618
PsuI	RGATCY	3 cut(s)	481, 532, 629
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	426, 456, 663
SatI	GCNGC	2 cut(s)	6, 132
Sau3AI	GATC	6 cut(s)	289, 312, 481, 532, 629, 646
Sau96I	GGNCC	1 cut(s)	618
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	9 cut(s)	42, 145, 149, 192, 239, 382, 420, 463, 507
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	618
Sse9I	AATT	5 cut(s)	106, 171, 211, 338, 514
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	26, 422
SstI	GAGCTC	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	352
TaqII	GACCGA	1 cut(s)	635
TasI	AATT	5 cut(s)	106, 171, 211, 338, 514
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	3 cut(s)	426, 456, 663
Tru9I	TTAA	3 cut(s)	426, 456, 663
TscAI	CASTG	2 cut(s)	189, 657
TseI	GCWGC	2 cut(s)	5, 131
TspDTI	ATGAA	4 cut(s)	575, 591, 600, 608
TspRI	CASTG	2 cut(s)	189, 657
Van91I	CCANNNNNTGG	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	618
XagI	CCTNNNNNAGG	1 cut(s)	540
XapI	RAATTY	1 cut(s)	514
XspI	CTAG	2 cut(s)	26, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.