Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Forward (+)

27601832 .. 27603564

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGGAGGAAGTGGCGCTGGATGTGGAGGAGCTCCGCCACCTTCAGAGCATCGCGAAACGACCCCGTGTGATCAACCTCATTTCCTCTGAGATTCGCACTTTAGAGAAGAAGTTGTCACAAGAGGCTGTTCCTTCACCTGCATTGCAAATCCCAACTCCAGCTTCAACTGCTACTGCCACCCCAGCTCTGCATTACACTACGCTTTCGTCGTTCAGCTGGGACCAGGATAATGATAAAGTGAAGATATACATTTCTCTGGAAGGAGTTGATCAGGAGAAGATAGAGGCTGACTTCAAGCCTATGTCGTTGGACATCAAATTCCATGATGTGAAGGGAAAGAATTACAGGTTCGTTTTGCCTAAGCTGAACAAGGAGATTAATCCAGAGAAGTGTAAGGTGCTGGTTAAGCCTACAAGGGTTGTTATCAATTTGGCTAAAACTTCAAAGGATTACTGGTTGGACTTGAAATTTAAGGAGGATAAGTTGAAGCCGAGCCTGGATAAAGAGAAAGATCCCATGGCCGGAATTATGGACTTGATGAAGAACATGTACGAAGAAGGGGATCCGGAGATGAAGCAAACAATTGCCAAAGCGTGGACCGATGCAAGGCTTGGAAAAACCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

CS Siah-Interact_N

Protein Analysis

210

Amino Acids

23.77

Weight (kDa)

7.73

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Siah-Interact_N	PF09032	3 - 43	1e-07	Siah interacting protein, N terminal
CS	PF04969	71 - 147	1.3e-17	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	597
AccII	CGCG	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	2 cut(s)	5, 37
AclWI	GGATC	3 cut(s)	509, 560, 573
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	320, 470
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	3 cut(s)	524, 597, 609
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	5 cut(s)	168, 298, 447, 469, 490
AjnI	CCWGG	2 cut(s)	225, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	5 cut(s)	34, 164, 188, 219, 367
AluI	AGCT	5 cut(s)	34, 164, 188, 219, 367
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	3 cut(s)	509, 560, 573
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	1 cut(s)	522
ApoI	RAATTY	2 cut(s)	320, 470
AseI	ATTAAT	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	223, 600
AsuHPI	GGTGA	1 cut(s)	129
AvaII	GGWCC	2 cut(s)	223, 600
BamHI	GGATCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	36
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
Bbv12I	GWGCWC	1 cut(s)	36
BciT130I	CCWGG	2 cut(s)	227, 500
BclI	TGATCA	2 cut(s)	72, 271
BfoI	RGCGCY	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	227, 500
Bme18I	GGWCC	2 cut(s)	223, 600
BmgT120I	GGNCC	2 cut(s)	223, 600
BmiI	GGNNCC	2 cut(s)	224, 567
BmrFI	CCNGG	2 cut(s)	227, 500
BmsI	GCATC	2 cut(s)	60, 595
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	524, 597, 609
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	143
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	227, 500
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	3 cut(s)	524, 597, 609
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	44
BseYI	CCCAGC	2 cut(s)	184, 219
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	525, 569, 624
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	524, 597, 609
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	4 cut(s)	72, 271, 514, 565
Bsp19I	CCATGG	1 cut(s)	519
Bsp68I	TCGCGA	1 cut(s)	56
BspACI	CCGC	2 cut(s)	5, 37
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	1 cut(s)	82
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	2 cut(s)	224, 567
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	3 cut(s)	509, 560, 573
BsrDI	GCAATG	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	4 cut(s)	72, 271, 514, 565
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	227, 500
BstDEI	CTNAG	2 cut(s)	90, 363
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	1 cut(s)	28
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	4 cut(s)	75, 274, 517, 568
BstMBI	GATC	4 cut(s)	72, 271, 514, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 185, 409
BstNI	CCWGG	2 cut(s)	227, 500
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	2 cut(s)	225, 498
BstUI	CGCG	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	514, 565
BstYI	RGATCY	2 cut(s)	514, 565
BsuRI	GGCC	1 cut(s)	524
BtgI	CCRYGG	1 cut(s)	519
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	28
BtuMI	TCGCGA	1 cut(s)	56
BveI	ACCTGC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	2 cut(s)	223, 600
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	3 cut(s)	326, 520, 550
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	90, 363
DpnI	GATC	4 cut(s)	74, 273, 516, 567
DpnII	GATC	4 cut(s)	72, 271, 514, 565
EaeI	YGGCCR	1 cut(s)	522
EciI	GGCGGA	2 cut(s)	20, 26
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	223, 600
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	225, 498
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	3 cut(s)	329, 523, 553
FaiI	YATR	6 cut(s)	250, 305, 327, 521, 533, 551
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	325, 519, 549
FbaI	TGATCA	2 cut(s)	72, 271
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	36
GlaI	GCGC	1 cut(s)	18
GsaI	CCCAGC	2 cut(s)	188, 223
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	524
HapII	CCGG	3 cut(s)	525, 569, 624
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	329, 523, 553
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	3 cut(s)	525, 569, 624
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	600
Hpy188I	TCNGA	2 cut(s)	48, 91
Hpy188III	TCNNGA	5 cut(s)	55, 260, 275, 386, 569
Hpy8I	GTNNAC	1 cut(s)	600
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	5 cut(s)	53, 144, 257, 328, 554
HpyCH4V	TGCA	4 cut(s)	143, 148, 193, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 185, 409
HpyF3I	CTNAG	2 cut(s)	90, 363
Hsp92II	CATG	3 cut(s)	329, 523, 553
HspAI	GCGC	1 cut(s)	17
Kpn2I	TCCGGA	1 cut(s)	568
Ksp22I	TGATCA	2 cut(s)	72, 271
Kzo9I	GATC	4 cut(s)	72, 271, 514, 565
LmnI	GCTCC	2 cut(s)	31, 39
LweI	GCATC	2 cut(s)	60, 595
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	4 cut(s)	74, 273, 516, 567
MboI	GATC	4 cut(s)	72, 271, 514, 565
MboII	GAAGA	5 cut(s)	121, 256, 292, 556, 569
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	514, 565
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	6 cut(s)	320, 343, 430, 470, 528, 585
MmeI	TCCRAC	2 cut(s)	291, 441
MnlI	CCTC	6 cut(s)	22, 89, 97, 118, 280, 472
MroI	TCCGGA	1 cut(s)	568
MseI	TTAA	3 cut(s)	381, 408, 474
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	3 cut(s)	525, 569, 624
MspR9I	CCNGG	2 cut(s)	227, 500
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	2 cut(s)	227, 500
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	170, 185, 409
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	4 cut(s)	72, 271, 514, 565
NlaIII	CATG	3 cut(s)	329, 523, 553
NlaIV	GGNNCC	2 cut(s)	224, 567
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	117
NruI	TCGCGA	1 cut(s)	56
NspI	RCATGY	1 cut(s)	553
PaqCI	CACCTGC	1 cut(s)	148
PciI	ACATGT	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	597
PscI	ACATGT	1 cut(s)	549
PshBI	ATTAAT	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	225, 498
PspFI	CCCAGC	2 cut(s)	184, 219
PspGI	CCWGG	2 cut(s)	225, 498
PspN4I	GGNNCC	2 cut(s)	224, 567
PspPI	GGNCC	2 cut(s)	223, 600
PsuI	RGATCY	2 cut(s)	514, 565
PvuII	CAGCTG	1 cut(s)	219
RruI	TCGCGA	1 cut(s)	56
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	381, 408, 474
Sau3AI	GATC	4 cut(s)	72, 271, 514, 565
Sau96I	GGNCC	2 cut(s)	223, 600
ScrFI	CCNGG	2 cut(s)	227, 500
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	60, 595
SinI	GGWCC	2 cut(s)	223, 600
Sse9I	AATT	6 cut(s)	320, 343, 430, 470, 528, 585
SsiI	CCGC	2 cut(s)	5, 37
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	225, 498
StyI	CCWWGG	1 cut(s)	519
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	6 cut(s)	320, 343, 430, 470, 528, 585
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	3 cut(s)	381, 408, 474
Tru9I	TTAA	3 cut(s)	381, 408, 474
TseFI	GTSAC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	557, 590
Van91I	CCANNNNNTGG	1 cut(s)	597
VpaK11BI	GGWCC	2 cut(s)	223, 600
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	2 cut(s)	320, 470
XceI	RCATGY	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.