Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Reverse (-)

343562 .. 345254

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTCCGGAAGAAACGAGTCTCAATGCGTCTTTGTGAAGACTAGTATTGACACTCGTCTGGCGCTCCTCCTTGATAGTGATGATAGTGTATATGCTTTCAAAGAGAAAATCTGCAAAGAGCATGAACAATGTTTCCCAAGTGTTGGCAACATCACTATTTCTGCCTTGAAGGTTAACTTGGGTGGTAATGATTATCACTTGTCAGATTGTACGATTTTAAAAACCGCTCTTCAAGGCCTCCGTAACAAGGACTGGTTTCTATCAGTCGACCTAGTACGTGTCGAGGAGAAAGGTGAGCTGCAGATTGGTGAAGTTGTTGAGAAGAAAGCAAGAAAGAGAAAATCGAAAAGTGACAACAAAAGTATAAAGAAACCCTCCATAGAGACTCCAACAGAAGCAAAAGGCCTTGAAAGTGGTGAGGGAAATGTCACTAAGATGGGAGAGAATCAGCATATTTGTGATGCAGATCAAGAGGGACCTGTCAATGGTCATACCATTGATGTTGAGGTCAAGCTTGATCCTGTCGATGGTCATACCATTGATGTTGAGGCCAAGCTTGATCTTTCAGGGACAATGGAACAAGACGACCTTCAAAAGGAGGTAACAAATGCTGATTTAGTCATGAGTGACCAAGACAAGGATCTTGAAAAGGATAATCTTCTAGCTGAATTACACCAAACTACTGATGATGCTGAGAAAGAAGAGATCATAGGTCTTGTTAATGCTACTCCGGAAGCTATTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAAAAGAAAAAAAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAGGAACGCTGAGGAAGATGGTGTCGCGAGAGATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

304

Amino Acids

33.54

Weight (kDa)

4.84

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccBSI	CCGCTC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	902
AccIII	TCCGGA	2 cut(s)	5, 730
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	3 cut(s)	512, 648, 902
AfaI	GTAC	2 cut(s)	211, 276
AfiI	CCNNNNNNNGG	6 cut(s)	143, 247, 485, 527, 595, 637
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	6 cut(s)	100, 169, 233, 410, 593, 647
AhlI	ACTAGT	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
AluBI	AGCT	6 cut(s)	298, 514, 556, 665, 737, 873
AluI	AGCT	6 cut(s)	298, 514, 556, 665, 737, 873
Alw26I	GTCTC	2 cut(s)	24, 377
AlwI	GGATC	3 cut(s)	512, 648, 902
Aor13HI	TCCGGA	2 cut(s)	5, 730
AoxI	GGCC	3 cut(s)	235, 403, 549
ApeKI	GCWGC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	4 cut(s)	305, 320, 428, 791
AvaII	GGWCC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	5 cut(s)	430, 521, 770, 848, 887
BcoDI	GTCTC	2 cut(s)	24, 377
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	5 cut(s)	42, 272, 662, 860, 870
BfmI	CTRYAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	477
BmsI	GCATC	2 cut(s)	451, 679
BoxI	GACNNNNGTC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	859
BsaAI	YACGTR	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	765
BsaWI	WCCGGW	2 cut(s)	5, 730
Bsc4I	CCNNNNNNNGG	6 cut(s)	143, 247, 485, 527, 595, 637
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	465
BseAI	TCCGGA	2 cut(s)	5, 730
BseDI	CCNNGG	1 cut(s)	765
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	6 cut(s)	143, 247, 485, 527, 595, 637
BseMII	CTCAG	4 cut(s)	684, 744, 789, 876
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	3 cut(s)	56, 299, 800
BseXI	GCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	902
BshFI	GGCC	3 cut(s)	237, 405, 551
BsiSI	CCGG	2 cut(s)	6, 731
BslFI	GGGAC	2 cut(s)	489, 583
BslI	CCNNNNNNNGG	6 cut(s)	143, 247, 485, 527, 595, 637
BsmAI	GTCTC	2 cut(s)	24, 377
BsmFI	GGGAC	2 cut(s)	489, 583
BsnI	GGCC	3 cut(s)	237, 405, 551
Bsp13I	TCCGGA	2 cut(s)	5, 730
Bsp143I	GATC	6 cut(s)	466, 517, 559, 640, 705, 907
Bsp68I	TCGCGA	1 cut(s)	902
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	3 cut(s)	237, 405, 551
BspCNI	CTCAG	4 cut(s)	685, 745, 790, 877
BspEI	TCCGGA	2 cut(s)	5, 730
BspFNI	CGCG	1 cut(s)	902
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	303
BspPI	GGATC	3 cut(s)	512, 648, 902
BspQI	GCTCTTC	1 cut(s)	234
BsrBI	CCGCTC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	6 cut(s)	466, 517, 559, 640, 705, 907
BssT1I	CCWWGG	1 cut(s)	765
Bst6I	CTCTTC	2 cut(s)	234, 696
BstBAI	YACGTR	1 cut(s)	278
BstDEI	CTNAG	5 cut(s)	432, 693, 753, 798, 885
BstENI	CCTNNNNNAGG	1 cut(s)	593
BstFNI	CGCG	1 cut(s)	902
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	6 cut(s)	469, 520, 562, 643, 708, 910
BstMAI	GTCTC	2 cut(s)	24, 377
BstMBI	GATC	6 cut(s)	466, 517, 559, 640, 705, 907
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	299
BstUI	CGCG	1 cut(s)	902
BstV1I	GCAGC	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	2 cut(s)	640, 907
BstYI	RGATCY	2 cut(s)	640, 907
BsuRI	GGCC	3 cut(s)	237, 405, 551
BtuMI	TCGCGA	1 cut(s)	902
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	210, 275
CviAII	CATG	2 cut(s)	122, 622
CviQI	GTAC	2 cut(s)	210, 275
DdeI	CTNAG	5 cut(s)	432, 693, 753, 798, 885
DpnI	GATC	6 cut(s)	468, 519, 561, 642, 707, 909
DpnII	GATC	6 cut(s)	466, 517, 559, 640, 705, 907
DraI	TTTAAA	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	234, 696
EarI	CTCTTC	2 cut(s)	234, 696
Eco130I	CCWWGG	1 cut(s)	765
Eco147I	AGGCCT	2 cut(s)	237, 405
Eco47I	GGWCC	1 cut(s)	476
EcoNI	CCTNNNNNAGG	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	2 cut(s)	125, 625
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 573, 605
FaqI	GGGAC	2 cut(s)	489, 583
FatI	CATG	2 cut(s)	121, 621
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	5 cut(s)	42, 272, 662, 860, 870
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	237, 405, 551
HapII	CCGG	2 cut(s)	6, 731
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	125, 625
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	2 cut(s)	175, 268
HindII	GTYRAC	2 cut(s)	175, 268
HindIII	AAGCTT	2 cut(s)	512, 554
HinfI	GANTC	4 cut(s)	17, 385, 445, 838
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	6, 731
HphI	GGTGA	4 cut(s)	305, 320, 428, 791
Hpy166II	GTNNAC	2 cut(s)	175, 268
Hpy188I	TCNGA	3 cut(s)	205, 799, 843
Hpy188III	TCNNGA	7 cut(s)	6, 470, 622, 644, 731, 835, 901
Hpy8I	GTNNAC	2 cut(s)	175, 268
HpyAV	CCTTC	2 cut(s)	163, 599
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	114, 301, 464
HpyF3I	CTNAG	5 cut(s)	432, 693, 753, 798, 885
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	125, 625
HspAI	GCGC	1 cut(s)	62
Kpn2I	TCCGGA	2 cut(s)	5, 730
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	6 cut(s)	466, 517, 559, 640, 705, 907
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	19, 44, 238, 492, 534, 552, 744
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	2 cut(s)	451, 679
MaeI	CTAG	5 cut(s)	42, 272, 662, 860, 870
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	5 cut(s)	242, 350, 427, 601, 626
MalI	GATC	6 cut(s)	468, 519, 561, 642, 707, 909
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	6 cut(s)	466, 517, 559, 640, 705, 907
MboII	GAAGA	8 cut(s)	21, 49, 221, 334, 650, 713, 863, 902
MflI	RGATCY	2 cut(s)	640, 907
MluCI	AATT	1 cut(s)	668
MlyI	GAGTC	3 cut(s)	26, 379, 832
MmeI	TCCRAC	2 cut(s)	413, 866
MroI	TCCGGA	2 cut(s)	5, 730
MseI	TTAA	3 cut(s)	174, 218, 720
MslI	CAYNNNNRTG	2 cut(s)	434, 456
MspI	CCGG	2 cut(s)	6, 731
MvnI	CGCG	1 cut(s)	902
NdeII	GATC	6 cut(s)	466, 517, 559, 640, 705, 907
NlaIII	CATG	2 cut(s)	125, 625
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	3 cut(s)	350, 427, 626
NruI	TCGCGA	1 cut(s)	902
PagI	TCATGA	1 cut(s)	621
PceI	AGGCCT	2 cut(s)	237, 405
PciSI	GCTCTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	3 cut(s)	25, 379, 832
PpsI	GAGTC	3 cut(s)	25, 379, 832
Ppu21I	YACGTR	1 cut(s)	278
PpuMI	RGGWCCY	1 cut(s)	476
PshAI	GACNNNNGTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	476
PspPPI	RGGWCCY	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	303
PsuI	RGATCY	2 cut(s)	640, 907
RruI	TCGCGA	1 cut(s)	902
RsaI	GTAC	2 cut(s)	211, 276
RsaNI	GTAC	2 cut(s)	210, 275
RseI	CAYNNNNRTG	2 cut(s)	434, 456
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	174, 218, 720
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	6 cut(s)	466, 517, 559, 640, 705, 907
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	3 cut(s)	26, 379, 832
SfaNI	GCATC	2 cut(s)	451, 679
SfcI	CTRYAG	1 cut(s)	299
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	2 cut(s)	434, 456
SmlI	CTYRAG	1 cut(s)	874
SmoI	CTYRAG	1 cut(s)	874
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	1 cut(s)	668
SseBI	AGGCCT	2 cut(s)	237, 405
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	5 cut(s)	42, 272, 662, 860, 870
StuI	AGGCCT	2 cut(s)	237, 405
StyI	CCWWGG	1 cut(s)	765
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	4 cut(s)	267, 282, 344, 525
TasI	AATT	1 cut(s)	668
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	3 cut(s)	174, 218, 720
Tru9I	TTAA	3 cut(s)	174, 218, 720
TseFI	GTSAC	3 cut(s)	350, 427, 626
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	3 cut(s)	350, 427, 626
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	2 cut(s)	230, 900
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	476
XagI	CCTNNNNNAGG	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	5 cut(s)	42, 272, 662, 860, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.