Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Reverse (-)

10546511 .. 10548236

Gene Structure 1726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGGAAGAAGTTGGGCTTGATTTGGAAGAACTCAGGCAACTCCAGAACATCGCCAAGAGACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAGCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAGTTCCTGCACCGGTTTCTTCTTCGGGTAAGCCGGTTTCTTCTTCGGCATTGAACTATGTAACTCTCGGAACATTCAGCTGGGATCAAGACAATGACAAAGTCAAGATGTACATATCCTTGGAAGGTGTTGATGAGGACAAGGTTCAAGCTGAGTTCAAGCCAATGTCTTTAGACATCAAGATCCATGATGTACAAGGAAAAAATTACCGATGTGCCATCCCGAAGTTGTGTAAGGAGATTATGCCTGAGAAATGTAAAGTGCTTGTAAAGCCTAAGAGGATAGTTATCACTATGGTCAAGTCTTCCAGAGGAAACTGGCTTGACATTCACCACAAAGAAGACAAGATTAAACCGAGTTTGGAGAAAGAGAAAGACCCAATGGCTGGAATTATGGGGATGATGAAGAACTTGTATGAGGATGGAGATGAAGAAATGAAGAAGACAATAGCTAAAGCCTGGACAGATGCTAGGTCAGGCAAAGCAGCAGATCCTTTAAAAGGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

CS Siah-Interact_N

Protein Analysis

222

Amino Acids

24.82

Weight (kDa)

8.78

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Siah-Interact_N	PF09032	3 - 39	4.8e-07	Siah interacting protein, N terminal
CS	PF04969	78 - 154	4.2e-18	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc65I	GGTACC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	545
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	252, 337, 644
AfaI	GTAC	3 cut(s)	153, 272, 354
AfiI	CCNNNNNNNGG	2 cut(s)	545, 659
AgeI	ACCGGT	1 cut(s)	172
AgsI	TTSAA	5 cut(s)	99, 135, 214, 308, 319
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	4 cut(s)	112, 240, 311, 611
AluI	AGCT	4 cut(s)	112, 240, 311, 611
Alw26I	GTCTC	2 cut(s)	55, 111
AlwI	GGATC	3 cut(s)	252, 337, 644
AlwNI	CAGNNNCTG	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	644
AsiGI	ACCGGT	1 cut(s)	172
Asp718I	GGTACC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	66
BbsI	GAAGAC	3 cut(s)	456, 507, 608
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	2 cut(s)	386, 575
BciT130I	CCWGG	1 cut(s)	619
BcoDI	GTCTC	2 cut(s)	55, 111
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	646
Bme1390I	CCNGG	1 cut(s)	619
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	3 cut(s)	456, 507, 608
BpmI	CTGGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	2 cut(s)	545, 659
Bse118I	RCCGGY	2 cut(s)	172, 193
Bse1I	ACTGG	2 cut(s)	155, 482
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	3 cut(s)	378, 564, 586
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	545, 659
BseMII	CTCAG	4 cut(s)	49, 104, 303, 399
BseNI	ACTGG	2 cut(s)	155, 482
BseXI	GCAGC	1 cut(s)	656
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	151
BshTI	ACCGGT	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	173, 194
BslI	CCNNNNNNNGG	2 cut(s)	545, 659
BsmAI	GTCTC	2 cut(s)	55, 111
Bso31I	GGTCTC	1 cut(s)	55
Bsp1407I	TGTACA	2 cut(s)	270, 352
Bsp143I	GATC	3 cut(s)	244, 342, 649
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	48, 105, 304, 400
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	3 cut(s)	252, 337, 644
BspT107I	GGYRCC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	55
BsrFI	RCCGGY	2 cut(s)	172, 193
BsrGI	TGTACA	2 cut(s)	270, 352
BsrI	ACTGG	2 cut(s)	155, 482
BssAI	RCCGGY	2 cut(s)	172, 193
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	3 cut(s)	244, 342, 649
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	1 cut(s)	163
BstAUI	TGTACA	2 cut(s)	270, 352
BstDEI	CTNAG	5 cut(s)	35, 113, 312, 408, 435
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	378, 564, 586
BstKTI	GATC	3 cut(s)	247, 345, 652
BstMAI	GTCTC	2 cut(s)	55, 111
BstMBI	GATC	3 cut(s)	244, 342, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	656
BstV2I	GAAGAC	3 cut(s)	456, 507, 608
BstX2I	RGATCY	2 cut(s)	342, 649
BstYI	RGATCY	2 cut(s)	342, 649
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	3 cut(s)	378, 564, 586
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr10I	RCCGGY	2 cut(s)	172, 193
Csp6I	GTAC	3 cut(s)	152, 271, 353
CspAI	ACCGGT	1 cut(s)	172
CviAII	CATG	1 cut(s)	347
CviQI	GTAC	3 cut(s)	152, 271, 353
DdeI	CTNAG	5 cut(s)	35, 113, 312, 408, 435
DpnI	GATC	3 cut(s)	246, 344, 651
DpnII	GATC	3 cut(s)	244, 342, 649
DraI	TTTAAA	1 cut(s)	657
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	350
FaiI	YATR	8 cut(s)	219, 275, 348, 404, 455, 554, 576, 667
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	645
FokI	GGATG	3 cut(s)	365, 571, 593
Fsp4HI	GCNGC	1 cut(s)	645
FspBI	CTAG	1 cut(s)	630
GluI	GCNGC	1 cut(s)	645
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	29
HapII	CCGG	2 cut(s)	173, 194
Hin1II	CATG	1 cut(s)	350
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	2 cut(s)	173, 194
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	2 cut(s)	91, 230
Hpy188III	TCNNGA	6 cut(s)	46, 248, 265, 340, 382, 468
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	125, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	5 cut(s)	35, 113, 312, 408, 435
Hsp92II	CATG	1 cut(s)	350
KpnI	GGTACC	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	244, 342, 649
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	157, 220
MalI	GATC	3 cut(s)	246, 344, 651
MboI	GATC	3 cut(s)	244, 342, 649
MflI	RGATCY	2 cut(s)	342, 649
MluCI	AATT	3 cut(s)	85, 364, 549
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	75, 289, 432, 464, 571
MseI	TTAA	2 cut(s)	510, 656
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	2 cut(s)	173, 194
MspR9I	CCNGG	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	619
MwoI	GCNNNNNNNGC	1 cut(s)	430
NdeII	GATC	3 cut(s)	244, 342, 649
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	545
PinAI	ACCGGT	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	646
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	342, 649
PsyI	GACNNNGTC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	240
RsaI	GTAC	3 cut(s)	153, 272, 354
RsaNI	GTAC	3 cut(s)	152, 271, 353
SaqAI	TTAA	2 cut(s)	510, 656
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	3 cut(s)	244, 342, 649
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	619
SetI	ASST	9 cut(s)	67, 114, 153, 242, 289, 306, 313, 613, 635
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	85, 364, 549
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	3 cut(s)	85, 364, 549
TatI	WGTACW	2 cut(s)	270, 352
Tru1I	TTAA	2 cut(s)	510, 656
Tru9I	TTAA	2 cut(s)	510, 656
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	3 cut(s)	578, 603, 611
Tth111I	GACNNNGTC	1 cut(s)	260
Van91I	CCANNNNNTGG	1 cut(s)	545
XagI	CCTNNNNNAGG	1 cut(s)	657
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.