Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Reverse (-)

9723790 .. 9726573

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAGCAGAAGAAGAAGAAGTGGCGCTAGATTTGGAGGAGCTCCGCCGTATCCAGAGCATTGCAAAACGACCCCGTATTCTCAATCTCATCTCCTCTGAAATCGGCAATTTGGAAAAGTTGTCAAAAGAGGCTGCTTCTAAACCTACCTTGCCAACTCCTACTCCAACTCCAACTCCAATTTCTACGGCAGTGAAGGTGCCTTCCACCCCAGCTCTGAATTATGTTACACTTGGGTCATTCAGCTGGGAGCAAGATACTGATAAAGTGAAGATATATATATTTTTAGAGGGAGTTGATCAGGAGAAAATGGAGACTGAGATCAAGCCTACTTCCATTGATATCAAATTGCATGATGTCCAAGGAAGGAACTACAGATGTGCTATACCTAAACTCCATAGTCAGATTGTTCCAGAGAAGTGTAAGGTGCTAGTTAAGCCTACAAGGGTTGTGATTACATTGATTAAAGCTTCAAAGGGGAACTGGCTGGATCTGCATTTCAAGGAGGACAAGCTAAAGCCGAATTTGGATAAAGAGAAGGATCCTATGGCAGGAATCATGGACTTGATGAAGAATATGTACAATGAAGGGGATGAAGAAATGAAGCGAACAATTGCCAAAGCATGGACCGATGCGAGATCTGGAAAAACAGCCGATCCACTGAAGGGCTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

CS Siah-Interact_N

Protein Analysis

225

Amino Acids

25.34

Weight (kDa)

8.36

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	80 - 156	4.8e-16	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	624
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	4 cut(s)	498, 536, 549, 650
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	3 cut(s)	551, 624, 665
AgsI	TTSAA	2 cut(s)	474, 502
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	5 cut(s)	43, 215, 246, 470, 514
AluI	AGCT	5 cut(s)	43, 215, 246, 470, 514
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	4 cut(s)	498, 536, 549, 650
ApeKI	GCWGC	2 cut(s)	5, 134
ApoI	RAATTY	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	627
BamHI	GGATCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	45
BarI	GAAGNNNNNNTAC	2 cut(s)	563, 595
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	17, 121
BceAI	ACGGC	2 cut(s)	33, 204
BciVI	GTATCC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	2 cut(s)	29, 431
BfmI	CTRYAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	2 cut(s)	6, 135
BlsI	GCNGC	2 cut(s)	7, 136
Bme18I	GGWCC	1 cut(s)	627
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	201, 543
BmsI	GCATC	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	361
BsaXI	ACNNNNNCTCC	8 cut(s)	148, 154, 160, 178, 184, 190, 378, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	551, 624, 665
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	3 cut(s)	551, 624, 665
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	2 cut(s)	53, 85
BseXI	GCAGC	2 cut(s)	17, 121
BseYI	CCCAGC	2 cut(s)	211, 246
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	551, 624, 665
BsmAI	GTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
BspACI	CCGC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	201, 543
BspPI	GGATC	4 cut(s)	498, 536, 549, 650
BspT107I	GGYRCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	60
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
BssT1I	CCWWGG	1 cut(s)	361
BstAUI	TGTACA	1 cut(s)	579
BstDEI	CTNAG	1 cut(s)	318
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	6 cut(s)	301, 324, 493, 544, 641, 658
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 493
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	17, 121
BstX2I	RGATCY	3 cut(s)	490, 541, 638
BstYI	RGATCY	3 cut(s)	490, 541, 638
BsuI	GTATCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 659
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	3 cut(s)	353, 559, 624
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	6 cut(s)	300, 323, 492, 543, 640, 657
DpnII	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
DraI	TTTAAA	1 cut(s)	673
EciI	GGCGGA	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	356, 562, 627
FatI	CATG	3 cut(s)	352, 558, 623
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	6, 135
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	6, 135
FspBI	CTAG	2 cut(s)	29, 431
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	6, 135
GsaI	CCCAGC	2 cut(s)	215, 250
HaeII	RGCGCY	1 cut(s)	29
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	356, 562, 627
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	100, 219, 405
Hpy188III	TCNNGA	4 cut(s)	55, 302, 413, 642
HpyAV	CCTTC	6 cut(s)	190, 213, 360, 532, 581, 658
HpyCH4V	TGCA	3 cut(s)	65, 352, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 493
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	356, 562, 627
HspAI	GCGC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
LmnI	GCTCC	3 cut(s)	40, 48, 250
LpnPI	CCDG	9 cut(s)	68, 225, 232, 287, 426, 469, 473, 537, 627
Lsp1109I	GCAGC	2 cut(s)	17, 121
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	29, 431
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	6 cut(s)	300, 323, 492, 543, 640, 657
MboI	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
MboII	GAAGA	6 cut(s)	23, 26, 29, 283, 583, 608
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	3 cut(s)	490, 541, 638
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	6 cut(s)	109, 180, 220, 347, 523, 612
MmeI	TCCRAC	2 cut(s)	191, 197
MnlI	CCTC	5 cut(s)	31, 106, 124, 283, 499
MseI	TTAA	3 cut(s)	435, 465, 672
MspA1I	CMGCKG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	612
MwoI	GCNNNNNNNGC	2 cut(s)	436, 493
NdeII	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
NlaIII	CATG	3 cut(s)	356, 562, 627
NlaIV	GGNNCC	2 cut(s)	201, 543
PfeI	GAWTC	1 cut(s)	555
PflMI	CCANNNNNTGG	1 cut(s)	624
PkrI	GCNGC	2 cut(s)	7, 136
Psp124BI	GAGCTC	1 cut(s)	45
PspFI	CCCAGC	2 cut(s)	211, 246
PspN4I	GGNNCC	2 cut(s)	201, 543
PspPI	GGNCC	1 cut(s)	627
PsuI	RGATCY	3 cut(s)	490, 541, 638
PvuII	CAGCTG	1 cut(s)	246
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	435, 465, 672
SatI	GCNGC	2 cut(s)	6, 135
Sau3AI	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
Sau96I	GGNCC	1 cut(s)	627
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	627
Sse9I	AATT	6 cut(s)	109, 180, 220, 347, 523, 612
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	2 cut(s)	29, 431
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	361
TaqII	GACCGA	1 cut(s)	644
TasI	AATT	6 cut(s)	109, 180, 220, 347, 523, 612
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	3 cut(s)	435, 465, 672
Tru9I	TTAA	3 cut(s)	435, 465, 672
TscAI	CASTG	2 cut(s)	198, 666
TseI	GCWGC	2 cut(s)	5, 134
TspDTI	ATGAA	4 cut(s)	584, 600, 609, 617
TspRI	CASTG	2 cut(s)	198, 666
Van91I	CCANNNNNTGG	1 cut(s)	624
VpaK11BI	GGWCC	1 cut(s)	627
XagI	CCTNNNNNAGG	1 cut(s)	549
XapI	RAATTY	1 cut(s)	523
XspI	CTAG	2 cut(s)	29, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.