Rh5DG106100

Calcyclin-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006557
Physical Location & Seq
Reverse (-)
9670114 .. 9673159
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG106100.1

Sequence Viewer

Length: 582 bp
ATGGCAGCAGAAGAAGAAGTGGCGCTAGATTTGGAGGAGCTCCGCCGTATCCAGAGCATTGCAAAACGACCCCGGATTCTCAATCTCATCTCCTCTGAAATCGGCAATTTGGAAAAGTTGTCAAAAGAGGCTGCTTCTAAACCTACCTTGCCAACTCCTACTCCAACTCCAACTCCAATTTCTTCGGCAGTGAAGGTGCCTTCCACCCCAGCTCTGAATTATGTTACACTTGGGTCATTCAGCTGGGAGCAAGATACTGATAAAGTGAAGATATATATATTTTTGGAGGGAGTTGATAAGGAGAAAATGGAGACTGAGATCAAGCCTAATTCAATTGATATCAAATTGCATGATGTCCAAGGAAAGAACTACAGATGTGCTATACCTAAACTCCATAGCCAGATTGTTCCAGAGAAGTGTAAGGTTCTAGTTAAGCCTACAAGGGTCGTGATTACATTGATTAAAGCTTCAAAGGGGAACTGGCTGGATCTGCATTTCAAGGAGGACAAGCTAAAGCCAAATTTGGATAAAGAGAAGGATCCTATGGCAGGAATCATGGACTTGATGAAGGTCAGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
CS Siah-Interact_N

Protein Analysis

193

Amino Acids

21.63

Weight (kDa)

8.72

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 79 - 155 5.4e-17 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AciI CCGC 1 cut(s) 43
AclWI GGATC 3 cut(s) 495, 533, 546
AcsI RAATTY 1 cut(s) 520
AfaI GTAC 1 cut(s) 577
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 3 cut(s) 333, 471, 499
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 5 cut(s) 40, 212, 243, 467, 511
AluI AGCT 5 cut(s) 40, 212, 243, 467, 511
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 3 cut(s) 495, 533, 546
ApeKI GCWGC 2 cut(s) 5, 131
ApoI RAATTY 1 cut(s) 520
AspLEI GCGC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 73
BamHI GGATCC 1 cut(s) 538
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 17, 118
BceAI ACGGC 1 cut(s) 30
BciVI GTATCC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 26, 428
BfmI CTRYAG 1 cut(s) 370
BfoI RGCGCY 1 cut(s) 26
BfuI GTATCC 1 cut(s) 59
BisI GCNGC 2 cut(s) 6, 132
BlsI GCNGC 2 cut(s) 7, 133
Bme1390I CCNGG 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 198, 540
BmrFI CCNGG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 71, 358
BsaXI ACNNNNNCTCC 8 cut(s) 145, 151, 157, 175, 181, 187, 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse1I ACTGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 71, 358
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 485
BseRI GAGGAG 2 cut(s) 50, 82
BseXI GCAGC 2 cut(s) 17, 118
BseYI CCCAGC 2 cut(s) 208, 243
BshNI GGYRCC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 318, 487, 538
BspACI CCGC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 198, 540
BspPI GGATC 3 cut(s) 495, 533, 546
BspT107I GGYRCC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 2 cut(s) 71, 358
BssMI GATC 3 cut(s) 318, 487, 538
BssT1I CCWWGG 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 315
BstENI CCTNNNNNAGG 1 cut(s) 546
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 3 cut(s) 321, 490, 541
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 3 cut(s) 318, 487, 538
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 17, 118
BstX2I RGATCY 2 cut(s) 487, 538
BstYI RGATCY 2 cut(s) 487, 538
BsuI GTATCC 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
CfoI GCGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 576
CviAII CATG 2 cut(s) 350, 556
CviQI GTAC 1 cut(s) 576
DdeI CTNAG 1 cut(s) 315
DpnI GATC 3 cut(s) 320, 489, 540
DpnII GATC 3 cut(s) 318, 487, 538
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 2 cut(s) 353, 559
FatI CATG 2 cut(s) 349, 555
Fnu4HI GCNGC 2 cut(s) 6, 132
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 6, 132
FspBI CTAG 2 cut(s) 26, 428
GlaI GCGC 1 cut(s) 24
GluI GCNGC 2 cut(s) 6, 132
GsaI CCCAGC 2 cut(s) 212, 247
HaeII RGCGCY 1 cut(s) 26
HapII CCGG 1 cut(s) 73
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 353, 559
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 2 cut(s) 76, 552
HpaII CCGG 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 97, 216
Hpy188III TCNNGA 3 cut(s) 52, 410, 448
HpyAV CCTTC 4 cut(s) 187, 210, 529, 562
HpyCH4V TGCA 3 cut(s) 62, 349, 493
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 2 cut(s) 353, 559
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 3 cut(s) 318, 487, 538
LmnI GCTCC 3 cut(s) 37, 45, 247
LpnPI CCDG 9 cut(s) 65, 86, 222, 229, 413, 423, 466, 470, 534
Lsp1109I GCAGC 2 cut(s) 17, 118
MaeI CTAG 2 cut(s) 26, 428
MaeIII GTNAC 1 cut(s) 223
MalI GATC 3 cut(s) 320, 489, 540
MboI GATC 3 cut(s) 318, 487, 538
MboII GAAGA 4 cut(s) 23, 26, 174, 280
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 2 cut(s) 487, 538
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 7 cut(s) 106, 177, 217, 328, 333, 344, 520
MmeI TCCRAC 2 cut(s) 188, 194
MnlI CCTC 5 cut(s) 28, 103, 121, 280, 496
MseI TTAA 2 cut(s) 432, 462
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 73
MunI CAATTG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 490
NciI CCSGG 1 cut(s) 73
NdeII GATC 3 cut(s) 318, 487, 538
NlaIII CATG 2 cut(s) 353, 559
NlaIV GGNNCC 2 cut(s) 198, 540
PfeI GAWTC 2 cut(s) 76, 552
PkrI GCNGC 2 cut(s) 7, 133
Psp124BI GAGCTC 1 cut(s) 42
PspFI CCCAGC 2 cut(s) 208, 243
PspN4I GGNNCC 2 cut(s) 198, 540
PsuI RGATCY 2 cut(s) 487, 538
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 1 cut(s) 577
RsaNI GTAC 1 cut(s) 576
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 432, 462
SatI GCNGC 2 cut(s) 6, 132
Sau3AI GATC 3 cut(s) 318, 487, 538
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 42
SfcI CTRYAG 1 cut(s) 370
Sse9I AATT 7 cut(s) 106, 177, 217, 328, 333, 344, 520
SsiI CCGC 1 cut(s) 43
SspMI CTAG 2 cut(s) 26, 428
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 358
TasI AATT 7 cut(s) 106, 177, 217, 328, 333, 344, 520
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 2 cut(s) 76, 552
Tru1I TTAA 2 cut(s) 432, 462
Tru9I TTAA 2 cut(s) 432, 462
TscAI CASTG 1 cut(s) 195
TseI GCWGC 2 cut(s) 5, 131
TspDTI ATGAA 1 cut(s) 581
TspRI CASTG 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 1 cut(s) 520
XspI CTAG 2 cut(s) 26, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.