Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Forward (+)

393767 .. 395382

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTACTCGCGAAACAAATTCCTCACCGGAGATTCGCTGCGTCTTTGTAGAAACCAACCTCGACACTCGTCTGGGCGTTCTCATGGAGAGAGATGATATTGTTTCTACTTTCAAAGAGAAAATCTGTAAAGAGCATGAAACGTGTTTCCCAAGTTTTGGAAACATCACTATCTCCGCTTTGAAGGTTAAATGTGGTGGTCAATTTTATCATTTAGTTGACTCTCTCATTTTGAACACGGCTTTCCCAAGCAAAGAAACGTTTCTAGTTGTCGATGTGCTGAGGGTTGAGGAGAAGGGTAAGATGCTGACCGGAGAAACTCCGTTGTCAAACCCTAATTTACTTGAGAGAGAGACCAAGACTATTAAGGATGTTGATAAAACTAAAAAGAGGAAACTGAAAAGTTTGGATAGTGCCAAAAGAAGTCGTAAGAAACTATCTCTTGTGGATCAGTCAAGTGGTAAAGGAGTGGTTGAACCTTTTGCAATAGGAAAAGACCTTGAAAAGGGAGAAAAAAGTGTTGCTACGGATATTGCACTTGTGGATGATGAGAACGAGAGTCACAAAGATGATGATGTTCGTGTAGTAGAAGACATCAATCAATCTGCTGATGTTGAGAACGAAGGGATCAACAAAGATGATGGTGTTGATGCAACTTCTGAATCTTTTCCAAACTCGACAGGAGAAAAGAAGCCAGTTACCAATATTCTTGTATTAATGGCGCCTGTGCCAAACAAGAAAAAGGTTGGTACAAAGAACAATGGTGGAAAAGATGCTGATGACAAGGCCTCGACTAAAGAAGTTACTGAAGTGGCTTCTAGCTCAAGGAACGTTGACCACGATGTTGTTATGGGAGACTTGCAAGAGAATGTGGAGAAAGTTGTTAAGAAATCAACAAAGAAGTCGAAGAAGAAACAGTCTTCGGACGTTGTGGAGGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

314

Amino Acids

34.56

Weight (kDa)

5.66

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	721
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	177
AclI	AACGTT	2 cut(s)	260, 831
AclWI	GGATC	2 cut(s)	456, 635
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	828
AcyI	GRCGYC	1 cut(s)	722
AfaI	GTAC	1 cut(s)	751
AfiI	CCNNNNNNNGG	2 cut(s)	158, 505
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	115, 184, 235, 476, 503
AluBI	AGCT	1 cut(s)	822
AluI	AGCT	1 cut(s)	822
Alw26I	GTCTC	2 cut(s)	347, 849
AlwI	GGATC	2 cut(s)	456, 635
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	19
AseI	ATTAAT	1 cut(s)	716
Asp700I	GAANNNNTTC	2 cut(s)	261, 666
AspLEI	GCGC	1 cut(s)	724
AsuHPI	GGTGA	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	721
BbsI	GAAGAC	2 cut(s)	597, 912
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	635
BceAI	ACGGC	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	347, 849
BfaI	CTAG	2 cut(s)	266, 819
BfoI	RGCGCY	1 cut(s)	725
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	723
BmsI	GCATC	3 cut(s)	294, 640, 763
BoxI	GACNNNNGTC	1 cut(s)	69
BpiI	GAAGAC	2 cut(s)	597, 912
Bpu10I	CCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	2 cut(s)	365, 808
BsaHI	GRCGYC	1 cut(s)	722
BsaI	GGTCTC	1 cut(s)	347
BsaWI	WCCGGW	2 cut(s)	28, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 505
Bse1I	ACTGG	1 cut(s)	695
BseGI	GGATG	2 cut(s)	376, 550
BseLI	CCNNNNNNNGG	2 cut(s)	158, 505
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	788
BshNI	GGYRCC	1 cut(s)	721
BsiSI	CCGG	2 cut(s)	29, 312
BslI	CCNNNNNNNGG	2 cut(s)	158, 505
BsmAI	GTCTC	2 cut(s)	347, 849
BsnI	GGCC	1 cut(s)	788
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	448, 627
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	723
BspPI	GGATC	2 cut(s)	456, 635
BspT107I	GGYRCC	1 cut(s)	721
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	695
BssMI	GATC	2 cut(s)	448, 627
BssNI	GRCGYC	1 cut(s)	722
Bst4CI	ACNGT	1 cut(s)	918
BstACI	GRCGYC	1 cut(s)	722
BstDEI	CTNAG	1 cut(s)	281
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	376, 550
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	725
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	2 cut(s)	451, 630
BstMAI	GTCTC	2 cut(s)	347, 849
BstMBI	GATC	2 cut(s)	448, 627
BstPAI	GACNNNNGTC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	2 cut(s)	597, 912
BsuRI	GGCC	1 cut(s)	788
BtsCI	GGATG	2 cut(s)	376, 550
BtuMI	TCGCGA	1 cut(s)	12
CfoI	GCGC	1 cut(s)	724
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	750
CviAII	CATG	2 cut(s)	85, 137
CviJI	RGCY	7 cut(s)	5, 242, 694, 788, 815, 822, 941
CviKI_1	RGCY	7 cut(s)	5, 242, 694, 788, 815, 822, 941
CviQI	GTAC	1 cut(s)	750
DdeI	CTNAG	1 cut(s)	281
DinI	GGCGCC	1 cut(s)	723
DpnI	GATC	2 cut(s)	450, 629
DpnII	GATC	2 cut(s)	448, 627
Eco147I	AGGCCT	1 cut(s)	788
Eco31I	GGTCTC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	828
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EgeI	GGCGCC	1 cut(s)	723
EheI	GGCGCC	1 cut(s)	723
FaeI	CATG	2 cut(s)	88, 140
FaiI	YATR	3 cut(s)	86, 138, 851
FatI	CATG	2 cut(s)	84, 136
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	2 cut(s)	383, 557
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	2 cut(s)	266, 819
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	725
HaeIII	GGCC	1 cut(s)	788
HapII	CCGG	2 cut(s)	29, 312
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	724
Hin1I	GRCGYC	1 cut(s)	722
Hin1II	CATG	2 cut(s)	88, 140
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HincII	GTYRAC	2 cut(s)	220, 835
HindII	GTYRAC	2 cut(s)	220, 835
HinfI	GANTC	4 cut(s)	34, 221, 559, 662
HpaII	CCGG	2 cut(s)	29, 312
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	2 cut(s)	220, 835
Hpy188I	TCNGA	2 cut(s)	661, 925
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	220, 835
HpyAV	CCTTC	3 cut(s)	178, 289, 617
HpyCH4III	ACNGT	1 cut(s)	918
HpyCH4IV	ACGT	4 cut(s)	143, 260, 831, 927
HpyCH4V	TGCA	4 cut(s)	485, 536, 653, 862
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	4 cut(s)	143, 260, 831, 927
Hsp92I	GRCGYC	1 cut(s)	722
Hsp92II	CATG	2 cut(s)	88, 140
HspAI	GCGC	1 cut(s)	722
KasI	GGCGCC	1 cut(s)	721
Kzo9I	GATC	2 cut(s)	448, 627
LpnPI	CCDG	6 cut(s)	42, 59, 325, 666, 708, 738
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	3 cut(s)	294, 640, 763
MaeI	CTAG	2 cut(s)	266, 819
MaeII	ACGT	4 cut(s)	143, 260, 831, 927
MaeIII	GTNAC	3 cut(s)	560, 697, 802
MalI	GATC	2 cut(s)	450, 629
MboI	GATC	2 cut(s)	448, 627
MboII	GAAGA	4 cut(s)	602, 912, 919, 922
MluCI	AATT	3 cut(s)	19, 203, 337
Mly113I	GGCGCC	1 cut(s)	722
MlyI	GAGTC	2 cut(s)	215, 568
MnlI	CCTC	8 cut(s)	34, 71, 276, 283, 384, 799, 928, 931
MroXI	GAANNNNTTC	2 cut(s)	261, 666
MseI	TTAA	5 cut(s)	189, 366, 716, 885, 943
MslI	CAYNNNNRTG	1 cut(s)	567
MspI	CCGG	2 cut(s)	29, 312
MvnI	CGCG	1 cut(s)	12
NarI	GGCGCC	1 cut(s)	722
NdeII	GATC	2 cut(s)	448, 627
NlaIII	CATG	2 cut(s)	88, 140
NlaIV	GGNNCC	1 cut(s)	723
NmuCI	GTSAC	1 cut(s)	560
NruI	TCGCGA	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	1 cut(s)	837
PdmI	GAANNNNTTC	2 cut(s)	261, 666
PfeI	GAWTC	2 cut(s)	34, 662
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	2 cut(s)	215, 567
PluTI	GGCGCC	1 cut(s)	725
PpsI	GAGTC	2 cut(s)	215, 567
PshAI	GACNNNNGTC	1 cut(s)	69
PshBI	ATTAAT	1 cut(s)	716
Psp1406I	AACGTT	2 cut(s)	260, 831
PspN4I	GGNNCC	1 cut(s)	723
RruI	TCGCGA	1 cut(s)	12
RsaI	GTAC	1 cut(s)	751
RsaNI	GTAC	1 cut(s)	750
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	5 cut(s)	189, 366, 716, 885, 943
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	448, 627
SchI	GAGTC	2 cut(s)	215, 568
SfaNI	GCATC	3 cut(s)	294, 640, 763
SfoI	GGCGCC	1 cut(s)	723
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	344, 823
SmoI	CTYRAG	2 cut(s)	344, 823
Sse9I	AATT	3 cut(s)	19, 203, 337
SseBI	AGGCCT	1 cut(s)	788
SsiI	CCGC	1 cut(s)	177
SspDI	GGCGCC	1 cut(s)	721
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	2 cut(s)	266, 819
StuI	AGGCCT	1 cut(s)	788
TaaI	ACNGT	1 cut(s)	918
TaiI	ACGT	4 cut(s)	146, 263, 834, 930
TaqI	TCGA	5 cut(s)	63, 273, 677, 791, 905
TasI	AATT	3 cut(s)	19, 203, 337
TfiI	GAWTC	2 cut(s)	34, 662
Tru1I	TTAA	5 cut(s)	189, 366, 716, 885, 943
Tru9I	TTAA	5 cut(s)	189, 366, 716, 885, 943
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	1 cut(s)	39
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	2 cut(s)	312, 542
Van91I	CCANNNNNTGG	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	716
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	1 cut(s)	19
XmnI	GAANNNNTTC	2 cut(s)	261, 666
XspI	CTAG	2 cut(s)	266, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.