Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Forward (+)

247927 .. 250406

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCTGATTCCGGTTCGCAATGTGTCTTTGTGAAGACTAGTATTGATACCCGTTTGGGGCTACTCCTTGACAGTCATGATAGCGTGTCTTCTTTCAAAGACAAATTCTGCAAAGAACACGAACTGTGTTTTCCAAGTGTTGGCAACATCACTGTTTCTGCCTTGAAGGTTAACGTGAGTGGTAATGATTATCACTTGTCCGATTCTATGATATTGAAAAAAGCTCTTCAAGGCCTCAGTAACGAGGACTTTTTTCTATCCGTTGACCTCGTACGTGTCCAGGAGAAAAGTGAGCTGCAGATTGGTGAAGCAGTTGAGAAAAAAACGAGGAAGAGAAAATCGAAAAGTGCCAACAATAGTAGAAAGAAACTCTCCATAGAGACGCCAACGGAAGCAAAAGGCCTTGAAAGTGGTGAGGGAACTGTCACTAGGTTGGAAGAGAATCAGAATATTTGTGATGTAGATCAAGAGGAACCTGTCGATGGTCATACCATAGATGTTGAGGCCAAGATTGATCTTTCAGGGACAATCGAACAAGACGACGTTCAAAAGGAGGTAGCAAATGCTGATTTAAACATGATTGACCAAGACAAGGATCTTGAAAATGATAATCTTCTAGCTGAATTAAACCAAACTAGTGATGATGCTGAGAAAGAAGGGATCATAGGTCTTGTTAATGCTACTTCTGAAGCTATTGAAAACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAAAAGAAAAATAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAGGAACGCTGAGGAAGATGGTGTCTCGAGAGATCCGCAGGAGAATGTGGCTAAAGTTGTGAAGAAGCCGAACAAGAGATCGAAGAAGGAACAGTCTTCAAACATTGTTGAGGAGGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

317

Amino Acids

34.91

Weight (kDa)

4.82

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	140
AciI	CCGC	1 cut(s)	866
AclWI	GGATC	3 cut(s)	603, 668, 857
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	383
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	4 cut(s)	57, 140, 482, 592
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	9 cut(s)	97, 166, 217, 230, 407, 548, 602, 698, 930
AhlI	ACTAGT	2 cut(s)	38, 635
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	5 cut(s)	224, 295, 620, 692, 828
AluI	AGCT	5 cut(s)	224, 295, 620, 692, 828
Alw26I	GTCTC	2 cut(s)	374, 859
AlwI	GGATC	3 cut(s)	603, 668, 857
Ama87I	CYCGRG	1 cut(s)	856
AoxI	GGCC	3 cut(s)	232, 400, 504
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	317, 425, 746
AvaI	CYCGRG	1 cut(s)	856
BbsI	GAAGAC	3 cut(s)	41, 81, 918
BbvCI	CCTCAGC	1 cut(s)	840
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	4 cut(s)	476, 725, 803, 842
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	374, 859
BcuI	ACTAGT	2 cut(s)	38, 635
BfaI	CTAG	6 cut(s)	39, 429, 617, 636, 815, 825
BfmI	CTRYAG	1 cut(s)	296
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	856
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	634, 937
BpiI	GAAGAC	3 cut(s)	41, 81, 918
Bpu10I	CCTNAGC	1 cut(s)	840
BpuEI	CTTGAG	1 cut(s)	814
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	383
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 140, 482, 592
Bse3DI	GCAATG	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	952
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	4 cut(s)	57, 140, 482, 592
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	5 cut(s)	250, 639, 699, 744, 831
BseRI	GAGGAG	1 cut(s)	755
BseXI	GCAGC	1 cut(s)	282
BshFI	GGCC	3 cut(s)	234, 402, 506
BsiHKCI	CYCGRG	1 cut(s)	856
BsiSI	CCGG	1 cut(s)	12
BsiWI	CGTACG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	4 cut(s)	57, 140, 482, 592
BsmAI	GTCTC	2 cut(s)	374, 859
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	234, 402, 506
BsoBI	CYCGRG	1 cut(s)	856
Bsp143I	GATC	6 cut(s)	463, 514, 595, 660, 862, 908
BspACI	CCGC	1 cut(s)	866
BspANI	GGCC	3 cut(s)	234, 402, 506
BspCNI	CTCAG	5 cut(s)	249, 640, 700, 745, 832
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	474
BspMAI	CTGCAG	1 cut(s)	300
BspPI	GGATC	3 cut(s)	603, 668, 857
BspQI	GCTCTTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	26
BssMI	GATC	6 cut(s)	463, 514, 595, 660, 862, 908
BssNI	GRCGYC	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	5 cut(s)	74, 126, 154, 424, 924
Bst6I	CTCTTC	3 cut(s)	231, 326, 432
BstACI	GRCGYC	1 cut(s)	383
BstBAI	YACGTR	1 cut(s)	275
BstDEI	CTNAG	5 cut(s)	236, 648, 708, 753, 840
BstF5I	GGATG	1 cut(s)	952
BstKTI	GATC	6 cut(s)	466, 517, 598, 663, 865, 911
BstMAI	GTCTC	2 cut(s)	374, 859
BstMBI	GATC	6 cut(s)	463, 514, 595, 660, 862, 908
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	3 cut(s)	41, 81, 918
BstX2I	RGATCY	2 cut(s)	595, 862
BstYI	RGATCY	2 cut(s)	595, 862
BsuRI	GGCC	3 cut(s)	234, 402, 506
BtsCI	GGATG	1 cut(s)	952
BtsIMutI	CAGTG	1 cut(s)	150
CciI	TCATGA	1 cut(s)	76
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	77, 577
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	5 cut(s)	236, 648, 708, 753, 840
DpnI	GATC	6 cut(s)	465, 516, 597, 662, 864, 910
DpnII	GATC	6 cut(s)	463, 514, 595, 660, 862, 908
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	3 cut(s)	231, 326, 432
EarI	CTCTTC	3 cut(s)	231, 326, 432
Eco147I	AGGCCT	2 cut(s)	234, 402
Eco57I	CTGAAG	1 cut(s)	708
Eco88I	CYCGRG	1 cut(s)	856
EcoRII	CCWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	2 cut(s)	80, 580
FaiI	YATR	7 cut(s)	78, 209, 377, 489, 494, 578, 665
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	2 cut(s)	76, 576
Fnu4HI	GCNGC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	296
FspBI	CTAG	6 cut(s)	39, 429, 617, 636, 815, 825
GluI	GCNGC	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	234, 402, 506
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	2 cut(s)	80, 580
HincII	GTYRAC	2 cut(s)	172, 265
HindII	GTYRAC	2 cut(s)	172, 265
HinfI	GANTC	4 cut(s)	8, 203, 442, 793
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	3 cut(s)	317, 425, 746
Hpy166II	GTNNAC	2 cut(s)	172, 265
Hpy188I	TCNGA	5 cut(s)	202, 447, 688, 754, 798
Hpy188III	TCNNGA	6 cut(s)	77, 467, 599, 790, 856, 858
Hpy8I	GTNNAC	2 cut(s)	172, 265
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	3 cut(s)	160, 650, 910
HpyCH4III	ACNGT	5 cut(s)	74, 126, 154, 424, 924
HpyCH4IV	ACGT	3 cut(s)	174, 274, 543
HpyCH4V	TGCA	2 cut(s)	111, 298
HpyF3I	CTNAG	5 cut(s)	236, 648, 708, 753, 840
HpySE526I	ACGT	3 cut(s)	174, 274, 543
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	80, 580
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	463, 514, 595, 660, 862, 908
LguI	GCTCTTC	1 cut(s)	231
LpnPI	CCDG	6 cut(s)	25, 266, 293, 489, 507, 854
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	2 cut(s)	634, 937
MaeI	CTAG	6 cut(s)	39, 429, 617, 636, 815, 825
MaeII	ACGT	3 cut(s)	174, 274, 543
MaeIII	GTNAC	2 cut(s)	239, 424
MalI	GATC	6 cut(s)	465, 516, 597, 662, 864, 910
MboI	GATC	6 cut(s)	463, 514, 595, 660, 862, 908
MflI	RGATCY	2 cut(s)	595, 862
MluCI	AATT	2 cut(s)	104, 623
MlyI	GAGTC	1 cut(s)	787
MmeI	TCCRAC	2 cut(s)	414, 821
MseI	TTAA	5 cut(s)	171, 572, 626, 675, 952
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
NdeII	GATC	6 cut(s)	463, 514, 595, 660, 862, 908
NlaIII	CATG	2 cut(s)	80, 580
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	424
PaeR7I	CTCGAG	1 cut(s)	856
PagI	TCATGA	1 cut(s)	76
PceI	AGGCCT	2 cut(s)	234, 402
PciSI	GCTCTTC	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PfeI	GAWTC	3 cut(s)	8, 203, 442
Pfl23II	CGTACG	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	297
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspLI	CGTACG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	300
PsuI	RGATCY	2 cut(s)	595, 862
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	5 cut(s)	171, 572, 626, 675, 952
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	6 cut(s)	463, 514, 595, 660, 862, 908
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	1 cut(s)	281
SfaNI	GCATC	2 cut(s)	634, 937
SfcI	CTRYAG	1 cut(s)	296
Sfr274I	CTCGAG	1 cut(s)	856
SlaI	CTCGAG	1 cut(s)	856
SmlI	CTYRAG	2 cut(s)	829, 856
SmoI	CTYRAG	2 cut(s)	829, 856
SpeI	ACTAGT	2 cut(s)	38, 635
Sse9I	AATT	2 cut(s)	104, 623
SseBI	AGGCCT	2 cut(s)	234, 402
SsiI	CCGC	1 cut(s)	866
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	6 cut(s)	39, 429, 617, 636, 815, 825
StuI	AGGCCT	2 cut(s)	234, 402
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	5 cut(s)	74, 126, 154, 424, 924
TaiI	ACGT	3 cut(s)	177, 277, 546
TaqI	TCGA	5 cut(s)	341, 480, 531, 857, 911
TasI	AATT	2 cut(s)	104, 623
TfiI	GAWTC	3 cut(s)	8, 203, 442
Tru1I	TTAA	5 cut(s)	171, 572, 626, 675, 952
Tru9I	TTAA	5 cut(s)	171, 572, 626, 675, 952
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	424
TspGWI	ACGGA	2 cut(s)	250, 404
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	104
XhoI	CTCGAG	1 cut(s)	856
XspI	CTAG	6 cut(s)	39, 429, 617, 636, 815, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.