Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Reverse (-)

9894077 .. 9896969

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG119400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAGCAGAAGAAGAAGAAGTGGCGCTAGATTTGGAGGAGCTCCGCCGTATCCAGAGCATTGCAAAACGACCCCGTATTCTCAATCTCATCTCCTCTGAAATCGGCAATTTGGAAAAGTTGTCAAAAGAGGCTGCTTCTAAACCTACCTTGCCAACTCCTACTCCAACTCCAACTCCAATTTCTACGGCAGTGAAGGTGCCTTCCACCCCAGCTCTGAATTATGTTACACTTGGGTCATTCAGCTGGGAGCAAGATACTGATAAAGTGAAGATATATATATTTTTAGAGGGAGTTGATCAGGAGAAAATGGAGACTGAGATCAAGCCTACTTCCATTGATATCAAATTGCATGATGTCCAAGGAAGGAACTACAGATGTGCTATACCTAAACTCCATAGTCAGATTGTTCCAGAGAAGTGTAAGGTGCTAGTTAAGCCTACAAGGGTTGTGATTACATTGATTAAAGCTTCAAAGGGGAACTGGCTGGATCTGCATTTCAAGGAGGACAAGCTAAAGCCGAATTTGGATAAAGAGAAGGATCCTATGGCAGGAATCATGGACTTGATGAAGAATATGTACAATGAAGGGGATGAAGAAATGAAGCGAACAATTGCCAAAGCATGGACCGATGCGAGATCTGGAAAAACAGCCGATCCACTGAAGGGCTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

CS Siah-Interact_N

Protein Analysis

225

Amino Acids

25.34

Weight (kDa)

8.36

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	80 - 156	4.8e-16	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	624
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	4 cut(s)	498, 536, 549, 650
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	3 cut(s)	551, 624, 665
AgsI	TTSAA	2 cut(s)	474, 502
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	5 cut(s)	43, 215, 246, 470, 514
AluI	AGCT	5 cut(s)	43, 215, 246, 470, 514
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	4 cut(s)	498, 536, 549, 650
ApeKI	GCWGC	2 cut(s)	5, 134
ApoI	RAATTY	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	627
BamHI	GGATCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	45
BarI	GAAGNNNNNNTAC	2 cut(s)	563, 595
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	17, 121
BceAI	ACGGC	2 cut(s)	33, 204
BciVI	GTATCC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	2 cut(s)	29, 431
BfmI	CTRYAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	2 cut(s)	6, 135
BlsI	GCNGC	2 cut(s)	7, 136
Bme18I	GGWCC	1 cut(s)	627
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	201, 543
BmsI	GCATC	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	361
BsaXI	ACNNNNNCTCC	8 cut(s)	148, 154, 160, 178, 184, 190, 378, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	551, 624, 665
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	3 cut(s)	551, 624, 665
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	2 cut(s)	53, 85
BseXI	GCAGC	2 cut(s)	17, 121
BseYI	CCCAGC	2 cut(s)	211, 246
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	551, 624, 665
BsmAI	GTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
BspACI	CCGC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	201, 543
BspPI	GGATC	4 cut(s)	498, 536, 549, 650
BspT107I	GGYRCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	60
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
BssT1I	CCWWGG	1 cut(s)	361
BstAUI	TGTACA	1 cut(s)	579
BstDEI	CTNAG	1 cut(s)	318
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	6 cut(s)	301, 324, 493, 544, 641, 658
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 493
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	17, 121
BstX2I	RGATCY	3 cut(s)	490, 541, 638
BstYI	RGATCY	3 cut(s)	490, 541, 638
BsuI	GTATCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 659
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	3 cut(s)	353, 559, 624
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	6 cut(s)	300, 323, 492, 543, 640, 657
DpnII	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
DraI	TTTAAA	1 cut(s)	673
EciI	GGCGGA	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	356, 562, 627
FatI	CATG	3 cut(s)	352, 558, 623
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	6, 135
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	6, 135
FspBI	CTAG	2 cut(s)	29, 431
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	6, 135
GsaI	CCCAGC	2 cut(s)	215, 250
HaeII	RGCGCY	1 cut(s)	29
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	356, 562, 627
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	100, 219, 405
Hpy188III	TCNNGA	4 cut(s)	55, 302, 413, 642
HpyAV	CCTTC	6 cut(s)	190, 213, 360, 532, 581, 658
HpyCH4V	TGCA	3 cut(s)	65, 352, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 493
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	356, 562, 627
HspAI	GCGC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
LmnI	GCTCC	3 cut(s)	40, 48, 250
LpnPI	CCDG	9 cut(s)	68, 225, 232, 287, 426, 469, 473, 537, 627
Lsp1109I	GCAGC	2 cut(s)	17, 121
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	29, 431
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	6 cut(s)	300, 323, 492, 543, 640, 657
MboI	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
MboII	GAAGA	6 cut(s)	23, 26, 29, 283, 583, 608
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	3 cut(s)	490, 541, 638
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	6 cut(s)	109, 180, 220, 347, 523, 612
MmeI	TCCRAC	2 cut(s)	191, 197
MnlI	CCTC	5 cut(s)	31, 106, 124, 283, 499
MseI	TTAA	3 cut(s)	435, 465, 672
MspA1I	CMGCKG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	612
MwoI	GCNNNNNNNGC	2 cut(s)	436, 493
NdeII	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
NlaIII	CATG	3 cut(s)	356, 562, 627
NlaIV	GGNNCC	2 cut(s)	201, 543
PfeI	GAWTC	1 cut(s)	555
PflMI	CCANNNNNTGG	1 cut(s)	624
PkrI	GCNGC	2 cut(s)	7, 136
Psp124BI	GAGCTC	1 cut(s)	45
PspFI	CCCAGC	2 cut(s)	211, 246
PspN4I	GGNNCC	2 cut(s)	201, 543
PspPI	GGNCC	1 cut(s)	627
PsuI	RGATCY	3 cut(s)	490, 541, 638
PvuII	CAGCTG	1 cut(s)	246
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	435, 465, 672
SatI	GCNGC	2 cut(s)	6, 135
Sau3AI	GATC	6 cut(s)	298, 321, 490, 541, 638, 655
Sau96I	GGNCC	1 cut(s)	627
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	627
Sse9I	AATT	6 cut(s)	109, 180, 220, 347, 523, 612
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	2 cut(s)	29, 431
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	361
TaqII	GACCGA	1 cut(s)	644
TasI	AATT	6 cut(s)	109, 180, 220, 347, 523, 612
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	3 cut(s)	435, 465, 672
Tru9I	TTAA	3 cut(s)	435, 465, 672
TscAI	CASTG	2 cut(s)	198, 666
TseI	GCWGC	2 cut(s)	5, 134
TspDTI	ATGAA	4 cut(s)	584, 600, 609, 617
TspRI	CASTG	2 cut(s)	198, 666
Van91I	CCANNNNNTGG	1 cut(s)	624
VpaK11BI	GGWCC	1 cut(s)	627
XagI	CCTNNNNNAGG	1 cut(s)	549
XapI	RAATTY	1 cut(s)	523
XspI	CTAG	2 cut(s)	29, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.