Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006557

Physical Location & Seq

Genomic Coordinates Forward (+)

35617216 .. 35618953

Gene Structure 1738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1261800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCAGAGGAAGTGGCGCTGGACGTGGAGGAGCTCCGCCACCTTCAGAGCATTGCGAAACGATCCCGTGTCATCAACCTCATTTCCACTGAGATTCGCACTCCGGAGAAAAAGATGTCACAAGAGGCTGCTGCTTCACCTGCACTGCAAATCCCAACTCCAATTTCAACTGATACTGCCACCCCAACTCTGCATTACACTGCGCTTTCGTCGTTCAGCTGGGATCAGGACAACGACAAAGTGAAGATATACATATTTCTGGAGGGAGTTGATCAGGAGAAGATAGAGACCGACTTCAAGCCTATGTCATTTGACATCAAACTCCATGATGTGGAAGGAAAGAATTACAGGTTCGGTAAGCTGAACAAGGAGATCAATCCAGAGAAGTGTAAGGTGCTGGTTAAGCCTACAAGGGCTGTTATCAATTTGGCTAAAACTTCAAAGGATTACTGGTTAGACTTGAAATTTAAGGAGGACAAGCTGAAGCCGAGTCTGGATAAAGAGAAAGATCCCATGGCAGGAATCATGGACTTGAAGAAGAATATGTACGATGAAGGGGATCCGGACATGAAACGAACAATTGCCAAAGCGTGGACTGATGCAAAGTTTGGACAAACCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

CS Siah-Interact_N

Protein Analysis

208

Amino Acids

23.62

Weight (kDa)

6.35

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Siah-Interact_N	PF09032	3 - 46	3e-06	Siah interacting protein, N terminal
CS	PF04969	71 - 145	1.2e-14	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30060 AT1G30070 AT1G30070 AT2G01800 AT2G01800 AT2G01800 AT2G02770 AT4G00580 AT4G00580 AT4G00920
fragaria_vesca	FvH4_3g05510
malus_domestica	MD05G1283600.v1.1 MD10G1261800.v1.1
prunus_persica	Prupe.4G081000_v2.0.a1
pyrus_communis	pycom05g26270 pycom10g21810
rosa_chinensis	RchiOBHm_Chr5g0014231
rosa_laevigata	RLG00000032092
rosa_multiflora	Rmu_ssc0000120.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062350
rosa_rugosa	Rorug05G0016300
rosa_samantha	Rh5AG110700 Rh5BG108000 Rh5CG119400 Rh5DG106100
rosa_wichuraiana	Rw5G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	148
AccB7I	CCANNNNNTGG	2 cut(s)	331, 591
AccIII	TCCGGA	2 cut(s)	103, 562
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	5 cut(s)	57, 231, 503, 554, 567
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	2 cut(s)	29, 503
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	3 cut(s)	331, 518, 591
AgsI	TTSAA	5 cut(s)	168, 298, 441, 463, 535
AjiI	CACGTC	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	4 cut(s)	34, 219, 361, 481
AluI	AGCT	4 cut(s)	34, 219, 361, 481
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	5 cut(s)	57, 231, 503, 554, 567
Aor13HI	TCCGGA	2 cut(s)	103, 562
ApeKI	GCWGC	2 cut(s)	128, 131
ApoI	RAATTY	1 cut(s)	464
AspLEI	GCGC	2 cut(s)	19, 205
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	36
BarI	GAAGNNNNNNTAC	2 cut(s)	530, 562
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	115, 118
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	2 cut(s)	129, 132
BlsI	GCNGC	2 cut(s)	130, 133
Bme1390I	CCNGG	1 cut(s)	619
BmgBI	CACGTC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	2 cut(s)	103, 562
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 518, 591
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	51
BseAI	TCCGGA	2 cut(s)	103, 562
BseDI	CCNNGG	1 cut(s)	513
BseLI	CCNNNNNNNGG	3 cut(s)	331, 518, 591
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	115, 118
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	104, 563, 618
BslI	CCNNNNNNNGG	3 cut(s)	331, 518, 591
BsmAI	GTCTC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp13I	TCCGGA	2 cut(s)	103, 562
Bsp143I	GATC	6 cut(s)	62, 223, 271, 372, 508, 559
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	82
BspEI	TCCGGA	2 cut(s)	103, 562
BspLI	GGNNCC	1 cut(s)	561
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	5 cut(s)	57, 231, 503, 554, 567
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	6 cut(s)	62, 223, 271, 372, 508, 559
BssT1I	CCWWGG	1 cut(s)	513
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	19, 205
BstKTI	GATC	6 cut(s)	65, 226, 274, 375, 511, 562
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	6 cut(s)	62, 223, 271, 372, 508, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 403
BstSCI	CCNGG	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	115, 118
BstX2I	RGATCY	2 cut(s)	508, 559
BstYI	RGATCY	2 cut(s)	508, 559
BtgI	CCRYGG	1 cut(s)	513
BtrI	CACGTC	1 cut(s)	25
BtsI	GCAGTG	2 cut(s)	143, 198
BtsIMutI	CAGTG	3 cut(s)	87, 143, 198
BveI	ACCTGC	1 cut(s)	148
CfoI	GCGC	2 cut(s)	19, 205
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	4 cut(s)	326, 514, 526, 568
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	6 cut(s)	64, 225, 273, 374, 510, 561
DpnII	GATC	6 cut(s)	62, 223, 271, 372, 508, 559
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	2 cut(s)	29, 503
EcoICRI	GAGCTC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	329, 517, 529, 571
FaiI	YATR	8 cut(s)	250, 254, 305, 327, 515, 527, 545, 569
FatI	CATG	4 cut(s)	325, 513, 525, 567
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	129, 132
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	129, 132
GlaI	GCGC	2 cut(s)	18, 204
GluI	GCNGC	2 cut(s)	129, 132
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	20
HapII	CCGG	3 cut(s)	104, 563, 618
HhaI	GCGC	2 cut(s)	19, 205
Hin1II	CATG	4 cut(s)	329, 517, 529, 571
Hin6I	GCGC	2 cut(s)	17, 203
HinP1I	GCGC	2 cut(s)	17, 203
HinfI	GANTC	3 cut(s)	94, 490, 522
HpaII	CCGG	3 cut(s)	104, 563, 618
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	594
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	7 cut(s)	104, 227, 260, 275, 380, 494, 563
Hpy8I	GTNNAC	1 cut(s)	594
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	53, 329, 548
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	4 cut(s)	143, 148, 193, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 403
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	329, 517, 529, 571
HspAI	GCGC	2 cut(s)	17, 203
Kpn2I	TCCGGA	2 cut(s)	103, 562
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	62, 223, 271, 372, 508, 559
LmnI	GCTCC	2 cut(s)	31, 39
Lsp1109I	GCAGC	2 cut(s)	115, 118
LweI	GCATC	1 cut(s)	589
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	6 cut(s)	64, 225, 273, 374, 510, 561
MboI	GATC	6 cut(s)	62, 223, 271, 372, 508, 559
MboII	GAAGA	4 cut(s)	256, 292, 547, 550
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	2 cut(s)	508, 559
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	5 cut(s)	162, 343, 424, 464, 579
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	5 cut(s)	22, 89, 118, 256, 466
MroI	TCCGGA	2 cut(s)	103, 562
MseI	TTAA	2 cut(s)	402, 468
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	3 cut(s)	104, 563, 618
MspR9I	CCNGG	1 cut(s)	619
MunI	CAATTG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	140, 403
NciI	CCSGG	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	6 cut(s)	62, 223, 271, 372, 508, 559
NlaIII	CATG	4 cut(s)	329, 517, 529, 571
NlaIV	GGNNCC	1 cut(s)	561
NmeAIII	GCCGAG	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	117
PaqCI	CACCTGC	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	94, 522
PflMI	CCANNNNNTGG	2 cut(s)	331, 591
PkrI	GCNGC	2 cut(s)	130, 133
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	561
PsuI	RGATCY	2 cut(s)	508, 559
PvuII	CAGCTG	1 cut(s)	219
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	402, 468
SatI	GCNGC	2 cut(s)	129, 132
Sau3AI	GATC	6 cut(s)	62, 223, 271, 372, 508, 559
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	1 cut(s)	589
Sse9I	AATT	5 cut(s)	162, 343, 424, 464, 579
SsiI	CCGC	1 cut(s)	37
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	1 cut(s)	513
TaiI	ACGT	1 cut(s)	27
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	5 cut(s)	162, 343, 424, 464, 579
TfiI	GAWTC	2 cut(s)	94, 522
Tru1I	TTAA	2 cut(s)	402, 468
Tru9I	TTAA	2 cut(s)	402, 468
TscAI	CASTG	3 cut(s)	94, 150, 205
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	2 cut(s)	128, 131
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	567, 584
TspRI	CASTG	3 cut(s)	94, 150, 205
Van91I	CCANNNNNTGG	2 cut(s)	331, 591
XapI	RAATTY	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.