AT1G31240

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006787
Physical Location & Seq
Reverse (-)
11163858 .. 11164928
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31240.1

Sequence Viewer

Length: 834 bp
ATGAAGCGACGACGCCGTAACTCCAAACTTAAATTCGAAGAAACCTCCGACCAATCACCGACATCCACGGCAGAGTTCTCCTTCTCTCTCACCAAAATCGCCGTCAGCCAAATCTGCCAATCTATTGGATACAAAGCCACCGATGCCTCCGCTCTCAACACTCTAACCCTAACCACCACCAAATTCTTACAATCCCTCGCCGAACTCGCATCGTCGTTCTCTAACACCGCTAATCGCACGGAGGTTAATCTCTTCGACATCGTCAATGGTCTCCAAGATATCGCTTTATCTACTTCCGATTGTTTCCCCGGTGGCTCTACGGTTCACGATATTGAATCTCAGTGCCTGATCAAATCCGCTGTTCTCCGTAACCTCTCCGATTTCGTTACCTACGCTCCTGAGATTCCTTTCGCTAAACCGTTACCGAGACGGGAAAGAGACGGATCGTTCGGAGGAGATTTGGATCACGTGGCGGTGACTCGATCGGTGGATGTGACGTCAGTTCCAGCTTGGCTTCCGCCTTTTCCTGACTCTAGTCTCTGCTCCGATCGTTGTTCAAAGGATAATAGATCTGATCACTTGTGGGAAAACTCTGATTCCGTTATTCGCCGTGAAATTTTGCCGGAGAGTTTGAAATCTAAAAGCGGAGGAAGATTACCGGTAATGAGAGATAAAGTGAGATTCAAGATGGAACAACGAGATTGGAGTAGTGGTGGTGATACGAGATTGGAGCGGTCGCGGGACAATAACAATGGCGAATCTGGCCGTGATCTTGAGGTTAAGAAGAAAATTAGAGAAGGATACACTTACTGTGCCGGCGAGTGGCCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

277

Amino Acids

30.96

Weight (kDa)

7.58

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 25 - 99 4.2e-26 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 500
AccBSI CCGCTC 2 cut(s) 152, 733
AccII CGCG 1 cut(s) 739
AciI CCGC 8 cut(s) 150, 228, 357, 473, 518, 645, 733, 739
AclWI GGATC 2 cut(s) 451, 471
AcoI YGGCCR 2 cut(s) 763, 824
AcsI RAATTY 3 cut(s) 32, 182, 615
AcvI CACGTG 1 cut(s) 469
AcyI GRCGYC 2 cut(s) 13, 497
AfiI CCNNNNNNNGG 1 cut(s) 822
AgeI ACCGGT 1 cut(s) 658
AgsI TTSAA 4 cut(s) 335, 558, 634, 685
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 1 cut(s) 509
AluI AGCT 1 cut(s) 509
Alw26I GTCTC 4 cut(s) 275, 421, 432, 542
AlwI GGATC 2 cut(s) 451, 471
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 2 cut(s) 763, 824
ApoI RAATTY 3 cut(s) 32, 182, 615
ArsI GACNNNNNNTTYG 4 cut(s) 87, 119, 431, 463
AsiGI ACCGGT 1 cut(s) 658
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 4 cut(s) 48, 82, 487, 728
AsuII TTCGAA 1 cut(s) 36
BbrPI CACGTG 1 cut(s) 469
BccI CCATC 1 cut(s) 682
BceAI ACGGC 5 cut(s) 84, 86, 594, 750, 811
BciVI GTATCC 2 cut(s) 122, 794
BclI TGATCA 2 cut(s) 348, 574
BcnI CCSGG 1 cut(s) 309
BcoDI GTCTC 4 cut(s) 275, 421, 432, 542
BfaI CTAG 1 cut(s) 534
BfuI GTATCC 2 cut(s) 122, 794
BglII AGATCT 1 cut(s) 569
Bme1390I CCNGG 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 133, 218
BoxI GACNNNNGTC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 309
BsaAI YACGTR 1 cut(s) 469
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 2 cut(s) 13, 497
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 66, 307
BsaWI WCCGGW 1 cut(s) 658
BsaXI ACNNNNNCTCC 4 cut(s) 379, 409, 697, 727
Bsc4I CCNNNNNNNGG 1 cut(s) 822
Bse118I RCCGGY 2 cut(s) 658, 815
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 66, 307
BseGI GGATG 2 cut(s) 62, 496
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 822
BseMII CTCAG 2 cut(s) 353, 390
BseRI GAGGAG 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 739
Bsh1285I CGRYCG 3 cut(s) 485, 550, 737
BshFI GGCC 2 cut(s) 765, 826
BshTI ACCGGT 1 cut(s) 658
BsiEI CGRYCG 3 cut(s) 485, 550, 737
BsiSI CCGG 4 cut(s) 309, 623, 659, 816
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 1 cut(s) 822
BsmAI GTCTC 4 cut(s) 275, 421, 432, 542
BsmBI CGTCTC 2 cut(s) 421, 432
BsmFI GGGAC 1 cut(s) 755
BsnI GGCC 2 cut(s) 765, 826
Bso31I GGTCTC 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 36
Bsp143I GATC 8 cut(s) 348, 443, 463, 482, 547, 569, 574, 769
BspACI CCGC 8 cut(s) 150, 228, 357, 473, 518, 645, 733, 739
BspANI GGCC 2 cut(s) 765, 826
BspCNI CTCAG 2 cut(s) 352, 391
BspFNI CGCG 1 cut(s) 739
BspPI GGATC 2 cut(s) 451, 471
BspT104I TTCGAA 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 275
BsrBI CCGCTC 2 cut(s) 152, 733
BsrFI RCCGGY 2 cut(s) 658, 815
BssAI RCCGGY 2 cut(s) 658, 815
BssECI CCNNGG 2 cut(s) 66, 307
BssMI GATC 8 cut(s) 348, 443, 463, 482, 547, 569, 574, 769
BssNI GRCGYC 2 cut(s) 13, 497
Bst4CI ACNGT 3 cut(s) 322, 420, 812
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 2 cut(s) 13, 497
BstBAI YACGTR 1 cut(s) 469
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 817
BstDEI CTNAG 2 cut(s) 339, 399
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 62, 496
BstFNI CGCG 1 cut(s) 739
BstKTI GATC 8 cut(s) 351, 446, 466, 485, 550, 572, 577, 772
BstMAI GTCTC 4 cut(s) 275, 421, 432, 542
BstMBI GATC 8 cut(s) 348, 443, 463, 482, 547, 569, 574, 769
BstMCI CGRYCG 3 cut(s) 485, 550, 737
BstMWI GCNNNNNNNGC 4 cut(s) 114, 143, 206, 762
BstPAI GACNNNNGTC 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 307
BstUI CGCG 1 cut(s) 739
BstX2I RGATCY 1 cut(s) 569
BstXI CCANNNNNNTGG 1 cut(s) 125
BstYI RGATCY 1 cut(s) 569
BsuI GTATCC 2 cut(s) 122, 794
BsuRI GGCC 2 cut(s) 765, 826
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 62, 496
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 817
CaiI CAGNNNCTG 1 cut(s) 346
Cfr10I RCCGGY 2 cut(s) 658, 815
CseI GACGC 1 cut(s) 21
CspAI ACCGGT 1 cut(s) 658
CviJI RGCY 7 cut(s) 108, 137, 315, 509, 514, 765, 826
CviKI_1 RGCY 7 cut(s) 108, 137, 315, 509, 514, 765, 826
DdeI CTNAG 2 cut(s) 339, 399
DpnI GATC 8 cut(s) 350, 445, 465, 484, 549, 571, 576, 771
DpnII GATC 8 cut(s) 348, 443, 463, 482, 547, 569, 574, 769
EaeI YGGCCR 2 cut(s) 763, 824
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
EciI GGCGGA 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 280
Eco72I CACGTG 1 cut(s) 469
EcoRV GATATC 1 cut(s) 280
Esp3I CGTCTC 2 cut(s) 421, 432
FaqI GGGAC 1 cut(s) 755
FauI CCCGC 1 cut(s) 732
FbaI TGATCA 2 cut(s) 348, 574
FokI GGATG 2 cut(s) 49, 503
FspBI CTAG 1 cut(s) 534
HaeIII GGCC 2 cut(s) 765, 826
HapII CCGG 4 cut(s) 309, 623, 659, 816
HgaI GACGC 1 cut(s) 21
Hin1I GRCGYC 2 cut(s) 13, 497
HinfI GANTC 7 cut(s) 335, 403, 478, 530, 596, 681, 758
HpaII CCGG 4 cut(s) 309, 623, 659, 816
HphI GGTGA 4 cut(s) 48, 82, 487, 728
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 7 cut(s) 49, 298, 379, 452, 547, 574, 595
Hpy188III TCNNGA 5 cut(s) 326, 398, 527, 685, 773
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 3 cut(s) 12, 15, 217
HpyAV CCTTC 2 cut(s) 91, 791
HpyCH4III ACNGT 3 cut(s) 322, 420, 812
HpyCH4IV ACGT 2 cut(s) 468, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 143, 206, 762
HpyF3I CTNAG 2 cut(s) 339, 399
HpySE526I ACGT 2 cut(s) 468, 497
Hsp92I GRCGYC 2 cut(s) 13, 497
KroI GCCGGC 1 cut(s) 815
KroNI GCCGGC 1 cut(s) 817
Ksp22I TGATCA 2 cut(s) 348, 574
Kzo9I GATC 8 cut(s) 348, 443, 463, 482, 547, 569, 574, 769
LmnI GCTCC 3 cut(s) 400, 548, 730
LpnPI CCDG 9 cut(s) 322, 359, 411, 519, 540, 636, 672, 747, 829
LweI GCATC 2 cut(s) 133, 218
MaeI CTAG 1 cut(s) 534
MaeII ACGT 2 cut(s) 468, 497
MaeIII GTNAC 6 cut(s) 17, 368, 385, 420, 475, 493
MalI GATC 8 cut(s) 350, 445, 465, 484, 549, 571, 576, 771
MbiI CCGCTC 2 cut(s) 152, 733
MboI GATC 8 cut(s) 348, 443, 463, 482, 547, 569, 574, 769
MboII GAAGA 4 cut(s) 50, 244, 663, 796
MflI RGATCY 1 cut(s) 569
MluCI AATT 4 cut(s) 32, 182, 615, 789
MlyI GAGTC 2 cut(s) 472, 524
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 8 cut(s) 55, 157, 206, 235, 383, 446, 641, 769
MroNI GCCGGC 1 cut(s) 815
MseI TTAA 3 cut(s) 30, 246, 780
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 4 cut(s) 309, 623, 659, 816
MspR9I CCNGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 739
MwoI GCNNNNNNNGC 4 cut(s) 114, 143, 206, 762
NaeI GCCGGC 1 cut(s) 817
NciI CCSGG 1 cut(s) 309
NdeII GATC 8 cut(s) 348, 443, 463, 482, 547, 569, 574, 769
NgoMIV GCCGGC 1 cut(s) 815
NmuCI GTSAC 2 cut(s) 475, 493
NspV TTCGAA 1 cut(s) 36
PdiI GCCGGC 1 cut(s) 817
PfeI GAWTC 5 cut(s) 335, 403, 596, 681, 758
PflFI GACNNNGTC 1 cut(s) 260
PinAI ACCGGT 1 cut(s) 658
Ple19I CGATCG 2 cut(s) 485, 550
PleI GAGTC 2 cut(s) 472, 524
PmaCI CACGTG 1 cut(s) 469
PmlI CACGTG 1 cut(s) 469
PpsI GAGTC 2 cut(s) 472, 524
Ppu21I YACGTR 1 cut(s) 469
PshAI GACNNNNGTC 1 cut(s) 534
PspCI CACGTG 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 569
PsyI GACNNNGTC 1 cut(s) 260
PvuI CGATCG 2 cut(s) 485, 550
SaqAI TTAA 3 cut(s) 30, 246, 780
Sau3AI GATC 8 cut(s) 348, 443, 463, 482, 547, 569, 574, 769
SchI GAGTC 2 cut(s) 472, 524
ScrFI CCNGG 1 cut(s) 309
SetI ASST 8 cut(s) 47, 246, 375, 392, 471, 500, 511, 780
SfaNI GCATC 2 cut(s) 133, 218
SfuI TTCGAA 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 4 cut(s) 32, 182, 615, 789
SsiI CCGC 8 cut(s) 150, 228, 357, 473, 518, 645, 733, 739
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 3 cut(s) 322, 420, 812
TaiI ACGT 2 cut(s) 471, 500
TaqI TCGA 3 cut(s) 36, 255, 481
TasI AATT 4 cut(s) 32, 182, 615, 789
TfiI GAWTC 5 cut(s) 335, 403, 596, 681, 758
Tru1I TTAA 3 cut(s) 30, 246, 780
Tru9I TTAA 3 cut(s) 30, 246, 780
TscAI CASTG 1 cut(s) 347
TseFI GTSAC 2 cut(s) 475, 493
Tsp45I GTSAC 2 cut(s) 475, 493
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 4 cut(s) 254, 356, 456, 589
TspRI CASTG 1 cut(s) 347
Tth111I GACNNNGTC 1 cut(s) 260
XapI RAATTY 3 cut(s) 32, 182, 615
XspI CTAG 1 cut(s) 534
ZraI GACGTC 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.