Rh4CG166900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006787
Physical Location & Seq
Forward (+)
36750021 .. 36750465
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG166900.1

Sequence Viewer

Length: 324 bp
ATGGCTATAGCCAAGTCCTCGGCCTCATACACCGCCAAGGCTAACCGCACCAATTCAAACCTCTTCGACTTCACAAGGCAATCCACGACTTGTAGTCGGTGCCAGCGCGAGAAAATAGGAGTTGAGGAGGAATTTGTTTTGAGGAATCGGGAATCAGATTCCGGGACGGTGTTGGGTTACATGTTCCGAGAAGGCTGTCCGAGTTCACAGAAGTGGAGGAGCCAAAACTGGTTAAGAGGAGGAGCTGTGGTGGAGGATTTGGTAGTTGAGAATGGGAATAGGAATGGGGATGTTGGGAATGAGTTTGATCGTTACCAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.07

Weight (kDa)

7.69

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 99
AccII CGCG 1 cut(s) 108
AciI CCGC 2 cut(s) 33, 46
AcsI RAATTY 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 57
AhdI GACNNNNNGTC 1 cut(s) 93
AjnI CCWGG 1 cut(s) 315
AleI CACNNNNGTG 1 cut(s) 211
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AoxI GGCC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 163
BanI GGYRCC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 1 cut(s) 163
BfmI CTRYAG 1 cut(s) 6
Bme1390I CCNGG 2 cut(s) 163, 317
BmeRI GACNNNNNGTC 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 101, 221
BmrFI CCNGG 2 cut(s) 163, 317
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 18, 36, 316
BsaXI ACNNNNNCTCC 4 cut(s) 231, 234, 261, 264
Bse1I ACTGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 18, 36, 316
BseGI GGATG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 4 cut(s) 140, 232, 252, 255
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 2 cut(s) 33, 46
BspANI GGCC 1 cut(s) 23
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 101, 221
BspT107I GGYRCC 1 cut(s) 99
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 18, 36, 316
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 104
BstF5I GGATG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 161, 315
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 104
CfoI GCGC 1 cut(s) 108
CviAII CATG 1 cut(s) 181
CviJI RGCY 7 cut(s) 5, 11, 23, 41, 195, 222, 245
CviKI_1 RGCY 7 cut(s) 5, 11, 23, 41, 195, 222, 245
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DriI GACNNNNNGTC 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 184
FaiI YATR 3 cut(s) 8, 28, 182
FaqI GGGAC 1 cut(s) 178
FatI CATG 1 cut(s) 180
FokI GGATG 1 cut(s) 302
GlaI GCGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 108
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 3 cut(s) 145, 152, 158
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 157, 188, 201
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 2 cut(s) 219, 242
LpnPI CCDG 4 cut(s) 116, 175, 214, 302
MaeIII GTNAC 2 cut(s) 176, 311
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 1 cut(s) 55
MluCI AATT 2 cut(s) 52, 131
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 211
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 163, 317
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 108
NciI CCSGG 1 cut(s) 163
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 101, 221
NspI RCATGY 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 211
PciI ACATGT 1 cut(s) 180
PfeI GAWTC 3 cut(s) 145, 152, 158
PfoI TCCNGGA 1 cut(s) 161
PscI ACATGT 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 101, 221
RseI CAYNNNNRTG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 233
Sau3AI GATC 1 cut(s) 307
ScrFI CCNGG 2 cut(s) 163, 317
SetI ASST 2 cut(s) 63, 247
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 211
Sse9I AATT 2 cut(s) 52, 131
SsiI CCGC 2 cut(s) 33, 46
StyD4I CCNGG 2 cut(s) 161, 315
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 52, 131
TfiI GAWTC 3 cut(s) 145, 152, 158
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.