pycom10g19690

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0006787
Physical Location & Seq
Reverse (-)
22717579 .. 22718319
741 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g19690.1

Sequence Viewer

Length: 741 bp
ATGTCCCAAAAATCCAAATCCAAATCACGACGCAAAACCCCAAAACAAGAACAAACCCCAACACCCCCATTCCAAAACCCGACCCCACCAGAGTTCCAATTCGCCATCGCCAGGATCGCGGTTTCTCAGATCACCCAATCAGTGGGATTCAAATCCACGAAGCCCTCCGCCCTCGAAACCCTAACCCACATCGCCGTCAAGTACATCGGCGCCGTAGCCTCGGCCTCGGCCTCCTACGCCGCCATGACCAACCGCACCAAAACGAATGTCTTCGACTTCGCCAATGCCCTCCACGACTTGCAGTCGGTGCAGGGATTCATGGGTGCCTCCGCCCTCCACGAAAGTGGATTCTGCGTACTGGGTTCGAGTGTTTTGAGCGATCTCGCCGGCTTCGTGAGGCGGAATCAGGAAACCCCGTTCGCCAGACCGATTCCGCGGGGAGAGGAATTGGGTGCGGAGGAAGGTGGGACTGTGATTCCCATTCCGCGGGAATTGGATTCCCGGAGGGGTTTGCACGTGCCGAGATGGCTGCCGGCGTTGCCTGAGGTGAAGAAGGCGGTTGGGAAGAGGAGGAATGGGGAGGAGCTGTGGGAGAACGTGGCGGCCGGAAATGTTGGCGATGGCGGTGAAAGTGGGAGCGGGAATGGTAAAGCGATATGCTGGGAATCGGGGGTAAAGAGTAAGAGGGGGAGAGTGAGGTTTAGGATAGGAGGAGGGAACGGATGTGGAATTGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

247

Amino Acids

26.36

Weight (kDa)

9.77

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 31 - 100 6.7e-18 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 209, 323
AccB7I CCANNNNNTGG 1 cut(s) 142
AccBSI CCGCTC 1 cut(s) 639
AccII CGCG 3 cut(s) 119, 436, 487
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 603
AcvI CACGTG 1 cut(s) 517
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 2 cut(s) 203, 357
AfiI CCNNNNNNNGG 3 cut(s) 111, 142, 486
AgsI TTSAA 1 cut(s) 151
AhdI GACNNNNNGTC 1 cut(s) 301
AjnI CCWGG 1 cut(s) 110
AleI CACNNNNGTG 1 cut(s) 342
AloI GAACNNNNNNTCC 2 cut(s) 401, 433
AluBI AGCT 1 cut(s) 586
AluI AGCT 1 cut(s) 586
AlwI GGATC 1 cut(s) 122
AoxI GGCC 3 cut(s) 222, 228, 603
ApeKI GCWGC 1 cut(s) 529
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 502
AsuHPI GGTGA 3 cut(s) 124, 559, 638
AxyI CCTNAGG 1 cut(s) 543
BanI GGYRCC 2 cut(s) 209, 323
BbrPI CACGTG 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 516
BccI CCATC 3 cut(s) 113, 519, 614
BceAI ACGGC 2 cut(s) 179, 197
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 1 cut(s) 502
BfoI RGCGCY 1 cut(s) 213
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 3 cut(s) 240, 530, 603
BlsI GCNGC 3 cut(s) 241, 531, 604
Bme1390I CCNGG 2 cut(s) 112, 502
BmeRI GACNNNNNGTC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 211, 325
BmrFI CCNGG 2 cut(s) 112, 502
BmrI ACTGGG 1 cut(s) 368
BmuI ACTGGG 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 502
BsaAI YACGTR 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 219, 225, 434, 485
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 142, 486
Bse118I RCCGGY 2 cut(s) 386, 532
Bse1I ACTGG 1 cut(s) 363
Bse21I CCTNAGG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 151
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 4 cut(s) 219, 225, 434, 485
BseGI GGATG 1 cut(s) 728
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 3 cut(s) 111, 142, 486
BseMII CTCAG 2 cut(s) 140, 534
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 3 cut(s) 583, 596, 726
BseX3I CGGCCG 1 cut(s) 603
BseXI GCAGC 1 cut(s) 516
BseYI CCCAGC 1 cut(s) 660
BsgI GTGCAG 1 cut(s) 329
Bsh1236I CGCG 3 cut(s) 119, 436, 487
Bsh1285I CGRYCG 1 cut(s) 606
BshFI GGCC 3 cut(s) 224, 230, 605
BshNI GGYRCC 2 cut(s) 209, 323
BsiEI CGRYCG 1 cut(s) 606
BsiSI CCGG 4 cut(s) 387, 502, 533, 606
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 3 cut(s) 111, 142, 486
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 3 cut(s) 224, 230, 605
Bsp143I GATC 3 cut(s) 114, 129, 379
BspANI GGCC 3 cut(s) 224, 230, 605
BspCNI CTCAG 2 cut(s) 139, 535
BspFNI CGCG 3 cut(s) 119, 436, 487
BspLI GGNNCC 2 cut(s) 211, 325
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 2 cut(s) 209, 323
BsrBI CCGCTC 1 cut(s) 639
BsrFI RCCGGY 2 cut(s) 386, 532
BsrI ACTGG 1 cut(s) 363
BssAI RCCGGY 2 cut(s) 386, 532
BssECI CCNNGG 4 cut(s) 219, 225, 434, 485
BssMI GATC 3 cut(s) 114, 129, 379
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 307
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 388, 534
BstDEI CTNAG 2 cut(s) 126, 543
BstDSI CCRYGG 2 cut(s) 434, 485
BstF5I GGATG 1 cut(s) 728
BstFNI CGCG 3 cut(s) 119, 436, 487
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 3 cut(s) 117, 132, 382
BstMBI GATC 3 cut(s) 114, 129, 379
BstMCI CGRYCG 1 cut(s) 606
BstMWI GCNNNNNNNGC 5 cut(s) 116, 236, 307, 526, 538
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 110, 500
BstUI CGCG 3 cut(s) 119, 436, 487
BstV1I GCAGC 1 cut(s) 516
BstV2I GAAGAC 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 344
BstZI CGGCCG 1 cut(s) 603
Bsu36I CCTNAGG 1 cut(s) 543
BsuRI GGCC 3 cut(s) 224, 230, 605
BtgI CCRYGG 2 cut(s) 434, 485
BtgZI GCGATG 3 cut(s) 91, 175, 633
BtsCI GGATG 1 cut(s) 728
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 388, 534
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 2 cut(s) 386, 532
Cfr42I CCGCGG 2 cut(s) 437, 488
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 202, 356
CviAII CATG 2 cut(s) 244, 319
CviJI RGCY 8 cut(s) 163, 218, 224, 230, 390, 529, 586, 605
CviKI_1 RGCY 8 cut(s) 163, 218, 224, 230, 390, 529, 586, 605
CviQI GTAC 2 cut(s) 202, 356
DdeI CTNAG 2 cut(s) 126, 543
DinI GGCGCC 1 cut(s) 211
DpnI GATC 3 cut(s) 116, 131, 381
DpnII GATC 3 cut(s) 114, 129, 379
DriI GACNNNNNGTC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 603
EagI CGGCCG 1 cut(s) 603
Eam1104I CTCTTC 1 cut(s) 560
Eam1105I GACNNNNNGTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 560
EciI GGCGGA 3 cut(s) 157, 319, 415
EclXI CGGCCG 1 cut(s) 603
Eco52I CGGCCG 1 cut(s) 603
Eco72I CACGTG 1 cut(s) 517
Eco81I CCTNAGG 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 211
EheI GGCGCC 1 cut(s) 211
FaeI CATG 2 cut(s) 247, 322
FaiI YATR 3 cut(s) 245, 320, 658
FaqI GGGAC 1 cut(s) 481
FatI CATG 2 cut(s) 243, 318
FauI CCCGC 3 cut(s) 429, 480, 632
Fnu4HI GCNGC 3 cut(s) 240, 530, 603
FokI GGATG 1 cut(s) 735
Fsp4HI GCNGC 3 cut(s) 240, 530, 603
GlaI GCGC 1 cut(s) 211
GluI GCNGC 3 cut(s) 240, 530, 603
GsaI CCCAGC 1 cut(s) 664
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 3 cut(s) 224, 230, 605
HapII CCGG 4 cut(s) 387, 502, 533, 606
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 2 cut(s) 247, 322
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 8 cut(s) 147, 315, 348, 403, 430, 475, 497, 665
HpaII CCGG 4 cut(s) 387, 502, 533, 606
HphI GGTGA 3 cut(s) 124, 559, 638
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 27, 394, 407
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 2 cut(s) 455, 547
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 2 cut(s) 516, 597
HpyCH4V TGCA 3 cut(s) 301, 310, 514
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 236, 307, 526, 538
HpyF3I CTNAG 2 cut(s) 126, 543
HpySE526I ACGT 2 cut(s) 516, 597
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 2 cut(s) 247, 322
HspAI GCGC 1 cut(s) 210
KasI GGCGCC 1 cut(s) 209
KroI GCCGGC 2 cut(s) 386, 532
KroNI GCCGGC 2 cut(s) 388, 534
KspI CCGCGG 2 cut(s) 437, 488
Kzo9I GATC 3 cut(s) 114, 129, 379
LmnI GCTCC 2 cut(s) 583, 636
Lsp1109I GCAGC 1 cut(s) 516
MaeII ACGT 2 cut(s) 516, 597
MalI GATC 3 cut(s) 116, 131, 381
MbiI CCGCTC 1 cut(s) 639
MboI GATC 3 cut(s) 114, 129, 379
MboII GAAGA 3 cut(s) 262, 562, 577
MluCI AATT 4 cut(s) 98, 446, 491, 729
Mly113I GGCGCC 1 cut(s) 210
MroNI GCCGGC 2 cut(s) 386, 532
MroXI GAANNNNTTC 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 2 cut(s) 436, 487
MspI CCGG 4 cut(s) 387, 502, 533, 606
MspR9I CCNGG 2 cut(s) 112, 502
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 3 cut(s) 119, 436, 487
MwoI GCNNNNNNNGC 5 cut(s) 116, 236, 307, 526, 538
NaeI GCCGGC 2 cut(s) 388, 534
NarI GGCGCC 1 cut(s) 210
NciI CCSGG 1 cut(s) 502
NdeII GATC 3 cut(s) 114, 129, 379
NgoMIV GCCGGC 2 cut(s) 386, 532
NlaIII CATG 2 cut(s) 247, 322
NlaIV GGNNCC 2 cut(s) 211, 325
NmeAIII GCCGAG 3 cut(s) 200, 206, 546
OliI CACNNNNGTG 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdiI GCCGGC 2 cut(s) 388, 534
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 8 cut(s) 147, 315, 348, 403, 430, 475, 497, 665
PflMI CCANNNNNTGG 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 500
PkrI GCNGC 3 cut(s) 241, 531, 604
PluTI GGCGCC 1 cut(s) 213
PmaCI CACGTG 1 cut(s) 517
PmlI CACGTG 1 cut(s) 517
Ppu21I YACGTR 1 cut(s) 517
Psp6I CCWGG 1 cut(s) 110
PspCI CACGTG 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 660
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 211, 325
RsaI GTAC 2 cut(s) 203, 357
RsaNI GTAC 2 cut(s) 202, 356
RseI CAYNNNNRTG 1 cut(s) 342
SacII CCGCGG 2 cut(s) 437, 488
SatI GCNGC 3 cut(s) 240, 530, 603
Sau3AI GATC 3 cut(s) 114, 129, 379
ScrFI CCNGG 2 cut(s) 112, 502
SetI ASST 6 cut(s) 466, 519, 549, 588, 600, 701
SfoI GGCGCC 1 cut(s) 211
Sfr303I CCGCGG 2 cut(s) 437, 488
SgrBI CCGCGG 2 cut(s) 437, 488
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 4 cut(s) 98, 446, 491, 729
SspDI GGCGCC 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 110, 500
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 2 cut(s) 519, 600
TaqI TCGA 3 cut(s) 174, 273, 365
TaqII GACCGA 1 cut(s) 442
TasI AATT 4 cut(s) 98, 446, 491, 729
TatI WGTACW 1 cut(s) 201
TauI GCSGC 2 cut(s) 242, 605
TfiI GAWTC 8 cut(s) 147, 315, 348, 403, 430, 475, 497, 665
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 529
TspDTI ATGAA 1 cut(s) 307
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 1 cut(s) 147
Van91I CCANNNNNTGG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.