Rroxscaffold_1G00058380

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006787
Physical Location & Seq
Reverse (-)
80205726 .. 80207003
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058380.1

Sequence Viewer

Length: 684 bp
ATGCCCCCAAAATCAAAACCCAAAAAGCGCAAAACCCCAAAACCAGTAATCATTCCCACGCCGGAAAACCCAACCCCGTCGGAGTTCTCCGCCTCCATAGCCAGAACCGCCGTCGCCCAGATCTGCCACTCGATCGGCTTCAAGGTCACGCAGCTCTCCGCCCTCGAAACCATAACCCACGTCGCGATCAACTACCTCGTGGCCATAGCCAAGTCCTCGGCCTCATACGCCGCCAAGGCCAACCGCACCGACTCAAACCTCTTGGACTTCACGAACGCAATCCACGACTTGTCGTTGGTGCAGGGCTTCAACGGCGCGTCGGAGCTTCACAGGAGCTGCGTATTGGGCTCGACTGTGTTGAAGGACCTGGCCAAGTTCGTGGAGTATACTGATGAGACTCCGTTTATGTGGCCGATTCCGCAGCGCGAGAAAATGGGAGTTGAGGAGGAATTGGTTTTGAGGAATCGGGAATCGGATTCGGGGAGGGGTGTTGGGTTACATGTTCCGAGATGGCTGCCCGGGTTGCCGGAAGTTGGGAAGCCGAAACCTGTTAAGAGGAGGAATGGGGAGGAGCTGTGGGAGAATGTGGTGGTTGGGAATGGGAATGTGGATAGTGGGAATGGGAATGAGAATGTTGGGAATGGGAATAGGGAGTTGGGGGTTAAGAGTAAGAGGGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

227

Amino Acids

24.74

Weight (kDa)

9.2

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 28 - 99 9.1e-16 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 386
AccII CGCG 3 cut(s) 185, 317, 426
AciI CCGC 6 cut(s) 90, 108, 159, 231, 244, 419
AcoI YGGCCR 3 cut(s) 201, 369, 410
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 3 cut(s) 142, 310, 361
AjiI CACGTC 1 cut(s) 181
AjnI CCWGG 1 cut(s) 366
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
AluBI AGCT 4 cut(s) 154, 325, 336, 574
AluI AGCT 4 cut(s) 154, 325, 336, 574
Alw26I GTCTC 1 cut(s) 389
AlwNI CAGNNNCTG 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 5 cut(s) 201, 219, 237, 369, 410
ApeKI GCWGC 4 cut(s) 151, 336, 421, 514
AspLEI GCGC 3 cut(s) 30, 317, 426
AspS9I GGNCC 1 cut(s) 364
AsuC2I CCSGG 2 cut(s) 519, 520
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 1 cut(s) 364
BalI TGGCCA 2 cut(s) 203, 371
BanII GRGCYC 1 cut(s) 350
BauI CACGAG 1 cut(s) 197
BbvI GCAGC 4 cut(s) 163, 323, 433, 501
BccI CCATC 1 cut(s) 504
BceAI ACGGC 2 cut(s) 95, 328
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 2 cut(s) 519, 520
BcoDI GTCTC 1 cut(s) 389
BglI GCCNNNNNGGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 120
BisI GCNGC 5 cut(s) 152, 231, 337, 422, 515
BlsI GCNGC 5 cut(s) 153, 232, 338, 423, 516
Bme1390I CCNGG 3 cut(s) 368, 519, 520
Bme18I GGWCC 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 518
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 364
BmrFI CCNGG 3 cut(s) 368, 519, 520
BpuMI CCSGG 2 cut(s) 519, 520
BsaJI CCNNGG 3 cut(s) 216, 234, 518
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 3 cut(s) 216, 234, 518
BseLI CCNNNNNNNGG 1 cut(s) 533
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 3 cut(s) 458, 571, 584
BseXI GCAGC 4 cut(s) 163, 323, 433, 501
BsgI GTGCAG 1 cut(s) 320
Bsh1236I CGCG 3 cut(s) 185, 317, 426
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 5 cut(s) 203, 221, 239, 371, 412
BsiEI CGRYCG 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 3 cut(s) 62, 519, 527
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 5 cut(s) 203, 221, 239, 371, 412
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 3 cut(s) 120, 132, 186
Bsp68I TCGCGA 1 cut(s) 185
BspACI CCGC 6 cut(s) 90, 108, 159, 231, 244, 419
BspANI GGCC 5 cut(s) 203, 221, 239, 371, 412
BspFNI CGCG 3 cut(s) 185, 317, 426
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 3 cut(s) 216, 234, 518
BssMI GATC 3 cut(s) 120, 132, 186
BssNAI GTATAC 1 cut(s) 387
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 234
Bst1107I GTATAC 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 355
BstFNI CGCG 3 cut(s) 185, 317, 426
BstHHI GCGC 3 cut(s) 30, 317, 426
BstKTI GATC 3 cut(s) 123, 135, 189
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 3 cut(s) 120, 132, 186
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 8 cut(s) 98, 107, 227, 236, 312, 345, 418, 523
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 3 cut(s) 366, 517, 518
BstUI CGCG 3 cut(s) 185, 317, 426
BstV1I GCAGC 4 cut(s) 163, 323, 433, 501
BstX2I RGATCY 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 387
BsuRI GGCC 5 cut(s) 203, 221, 239, 371, 412
BtrI CACGTC 1 cut(s) 181
BtuMI TCGCGA 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 336
CfoI GCGC 3 cut(s) 30, 317, 426
Cfr13I GGNCC 1 cut(s) 364
Cfr9I CCCGGG 1 cut(s) 518
CseI GACGC 1 cut(s) 306
CviAII CATG 1 cut(s) 500
DpnI GATC 3 cut(s) 122, 134, 188
DpnII GATC 3 cut(s) 120, 132, 186
EaeI YGGCCR 3 cut(s) 201, 369, 410
EciI GGCGGA 2 cut(s) 79, 148
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 503
FaiI YATR 7 cut(s) 98, 173, 206, 226, 387, 407, 501
FatI CATG 1 cut(s) 499
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 5 cut(s) 152, 231, 337, 422, 515
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 5 cut(s) 152, 231, 337, 422, 515
GlaI GCGC 3 cut(s) 29, 316, 425
GluI GCNGC 5 cut(s) 152, 231, 337, 422, 515
HaeIII GGCC 5 cut(s) 203, 221, 239, 371, 412
HapII CCGG 3 cut(s) 62, 519, 527
HgaI GACGC 1 cut(s) 306
HhaI GCGC 3 cut(s) 30, 317, 426
Hin1II CATG 1 cut(s) 503
Hin6I GCGC 3 cut(s) 28, 315, 424
HinP1I GCGC 3 cut(s) 28, 315, 424
HinfI GANTC 6 cut(s) 251, 397, 415, 463, 470, 476
HpaII CCGG 3 cut(s) 62, 519, 527
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 4 cut(s) 82, 322, 475, 507
Hpy188III TCNNGA 3 cut(s) 184, 271, 467
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 4 cut(s) 82, 116, 185, 322
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 8 cut(s) 98, 107, 227, 236, 312, 345, 418, 523
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 1 cut(s) 503
HspAI GCGC 3 cut(s) 28, 315, 424
Kzo9I GATC 3 cut(s) 120, 132, 186
LmnI GCTCC 3 cut(s) 322, 333, 571
Lsp1109I GCAGC 4 cut(s) 163, 323, 433, 501
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 145, 495
MalI GATC 3 cut(s) 122, 134, 188
MboI GATC 3 cut(s) 120, 132, 186
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 350
MlsI TGGCCA 2 cut(s) 203, 371
MluCI AATT 1 cut(s) 449
MluNI TGGCCA 2 cut(s) 203, 371
MlyI GAGTC 2 cut(s) 245, 391
MmeI TCCRAC 2 cut(s) 60, 300
Mox20I TGGCCA 2 cut(s) 203, 371
MscI TGGCCA 2 cut(s) 203, 371
MseI TTAA 2 cut(s) 552, 663
Msp20I TGGCCA 2 cut(s) 203, 371
MspI CCGG 3 cut(s) 62, 519, 527
MspR9I CCNGG 3 cut(s) 368, 519, 520
MvaI CCWGG 1 cut(s) 368
MvnI CGCG 3 cut(s) 185, 317, 426
MwoI GCNNNNNNNGC 8 cut(s) 98, 107, 227, 236, 312, 345, 418, 523
NciI CCSGG 2 cut(s) 519, 520
NdeII GATC 3 cut(s) 120, 132, 186
NlaIII CATG 1 cut(s) 503
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 145
NruI TCGCGA 1 cut(s) 185
NspI RCATGY 1 cut(s) 503
PciI ACATGT 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 4 cut(s) 415, 463, 470, 476
PkrI GCNGC 5 cut(s) 153, 232, 338, 423, 516
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 2 cut(s) 245, 391
PpsI GAGTC 2 cut(s) 245, 391
PpuMI RGGWCCY 1 cut(s) 364
PscI ACATGT 1 cut(s) 499
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 364
PspPPI RGGWCCY 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 336
PsuI RGATCY 1 cut(s) 120
PvuI CGATCG 1 cut(s) 135
RruI TCGCGA 1 cut(s) 185
SaqAI TTAA 2 cut(s) 552, 663
SatI GCNGC 5 cut(s) 152, 231, 337, 422, 515
Sau3AI GATC 3 cut(s) 120, 132, 186
Sau96I GGNCC 1 cut(s) 364
SchI GAGTC 2 cut(s) 245, 391
ScrFI CCNGG 3 cut(s) 368, 519, 520
SduI GDGCHC 1 cut(s) 350
SinI GGWCC 1 cut(s) 364
SmaI CCCGGG 1 cut(s) 520
Sse9I AATT 1 cut(s) 449
SsiI CCGC 6 cut(s) 90, 108, 159, 231, 244, 419
StyD4I CCNGG 3 cut(s) 366, 517, 518
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 183
TaqI TCGA 3 cut(s) 131, 165, 350
TasI AATT 1 cut(s) 449
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 415, 463, 470, 476
Tru1I TTAA 2 cut(s) 552, 663
Tru9I TTAA 2 cut(s) 552, 663
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 4 cut(s) 151, 336, 421, 514
Tsp45I GTSAC 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 390
TspMI CCCGGG 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 364
XceI RCATGY 1 cut(s) 503
XmaI CCCGGG 1 cut(s) 518
XmiI GTMKAC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.