Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006787

Physical Location & Seq

Genomic Coordinates Reverse (-)

47850293 .. 47857243

Gene Structure 6951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0361900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTATCTCGTCTGACACCAATAGCGCCTCCAGCTTTCAGTGCTCTTAGACTCTCTCTCACTTCCACTCTCAACCTCTCGACTCCTTTAAACCTTCACAAAATCTCTACTTGTTCTGCACTTTATCGTCTCTCCCAGACCTTCAAACCCACTTCGTCCTTTTTGAGCGCCAACCGGGTTCTTCTGCGTGTCATGGGAAGTCCAGGTCCCAAGGGTTCAGCTTCATTTAGTGCTGAAAGTAGCTCTGGTGATGGAAGGGAGATATTGGTCCAGCACTTACTTGTTAAAGAAGACAATCTTAAGCTTCTGTTAGATCTTCAGCAGAGAGTTTCACGAGGTGAAGACCTCAGTGATCTTGCTGCAGAGTACTCGATATGTCCATCCAAAGAAGAAGGGGGAATGCTGGGGTGGGTGAGAAAGGGGCAAATGGTACCTGAATTTGAGGAGGCTGCATTTAGTGCATCTTTAAACAAAGTTGTTAGGTGTAAAACAAAATTTGGATGGCATTTATTGCAAGTACTGTCAGAGAGGGAGGAATCAGTACTTCAAAACATTCAATGCAAGGAGCTTCACGTGAAAATGCAAGATCCCAGTTTCTTAGATGAGGCACAGTTGATTGATGTTCGAGAACCTGAAGAAGTGGCCCAAGCTTCTTTATCGGGTTTCCAGGTCCTTCCCCTTCGACAATTTGGAAGCTGGGGACCTGACATAACCACGAAGTTCGATCCTCAAAAGGATACTTATGTTATGTGTCACCATGGTATGCGATCTTTACAGGTTGCCCAGTGGTTGCAGACGCAGGGTTTCAAGAGAGTCTTCAATGTCGCTGGGGGAATTCATGAATATGCTCGAACGGTTGATCAAACAATTCCCACTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Bromo_TP TAF8_C

Protein Analysis

293

Amino Acids

32.66

Weight (kDa)

7.05

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	96 - 175	3e-16	PPIC-type PPIASE domain
Rotamase	PF00639	100 - 173	3.4e-14	PPIC-type PPIASE domain
Rhodanese	PF00581	200 - 283	1.3e-10	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31240
fragaria_vesca	FvH4_3g12040
malus_domestica	MD05G1255100.v1.1 MD10G1235200.v1.1
prunus_persica	Prupe.4G108700_v2.0.a1
pyrus_communis	pycom05g23330 pycom10g19690
rosa_chinensis	RchiOBHm_Chr3g0490931 RchiOBHm_Chr5g0019751
rosa_laevigata	RLG00000032465 RLG00000035697
rosa_multiflora	Rmu_sc0000652.1_g000024 Rmu_sc0006747.1_g000002 Rmu_sc0006747.1_g000018 Rmu_sc0041921.1_g000001 Rmu_ssc0000062.1_g000026
rosa_roxburghii	Rroxscaffold_1G00058380
rosa_rugosa	Rorug05G0053500 Rorug05G0361900
rosa_samantha	Rh3DG334700 Rh4CG166900 Rh5AG144100 Rh5BG142800 Rh5CG154600 Rh5DG143100
rosa_wichuraiana	Rw5G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	430
AclWI	GGATC	2 cut(s)	581, 719
AcsI	RAATTY	3 cut(s)	437, 494, 834
AcuI	CTGAAG	2 cut(s)	302, 654
AcvI	CACGTG	1 cut(s)	574
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	4 cut(s)	368, 432, 519, 543
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	145, 548, 557, 808, 820
AjnI	CCWGG	2 cut(s)	202, 666
AluBI	AGCT	7 cut(s)	35, 221, 243, 304, 568, 650, 696
AluI	AGCT	7 cut(s)	35, 221, 243, 304, 568, 650, 696
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	581, 719
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	2 cut(s)	359, 449
ApoI	RAATTY	3 cut(s)	437, 494, 834
Asp718I	GGTACC	1 cut(s)	430
AspLEI	GCGC	2 cut(s)	28, 170
AspS9I	GGNCC	5 cut(s)	206, 268, 643, 670, 701
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	4 cut(s)	260, 350, 424, 746
AvaII	GGWCC	4 cut(s)	206, 268, 670, 701
BaeI	ACNNNNGTAYC	2 cut(s)	729, 762
BanI	GGYRCC	1 cut(s)	430
BauI	CACGAG	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	574
BbsI	GAAGAC	3 cut(s)	297, 348, 808
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	346, 436
BccI	CCATC	3 cut(s)	245, 388, 495
BcgI	CGANNNNNNTGC	2 cut(s)	351, 385
BciT130I	CCWGG	2 cut(s)	204, 668
BciVI	GTATCC	1 cut(s)	730
BclI	TGATCA	1 cut(s)	859
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	2 cut(s)	29, 171
BfrI	CTTAAG	1 cut(s)	299
BfuI	GTATCC	1 cut(s)	730
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	2 cut(s)	360, 450
BlsI	GCNGC	2 cut(s)	361, 451
BmcAI	AGTACT	3 cut(s)	368, 519, 543
Bme1390I	CCNGG	3 cut(s)	176, 204, 668
Bme18I	GGWCC	4 cut(s)	206, 268, 670, 701
BmgT120I	GGNCC	5 cut(s)	206, 268, 643, 670, 701
BmiI	GGNNCC	3 cut(s)	208, 432, 702
BmrFI	CCNGG	3 cut(s)	176, 204, 668
BmrI	ACTGGG	2 cut(s)	585, 778
BmsI	GCATC	1 cut(s)	470
BmuI	ACTGGG	2 cut(s)	585, 778
BpiI	GAAGAC	3 cut(s)	297, 348, 808
BpmI	CTGGAG	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	574
BsaJI	CCNNGG	2 cut(s)	210, 757
Bse1I	ACTGG	2 cut(s)	591, 784
BseBI	CCWGG	2 cut(s)	204, 668
BseDI	CCNNGG	2 cut(s)	210, 757
BseGI	GGATG	2 cut(s)	380, 506
BseMII	CTCAG	1 cut(s)	361
BseNI	ACTGG	2 cut(s)	591, 784
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	346, 436
BseYI	CCCAGC	3 cut(s)	403, 696, 827
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	644
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	2 cut(s)	192, 714
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	192, 714
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	6 cut(s)	313, 352, 586, 724, 767, 859
Bsp19I	CCATGG	1 cut(s)	757
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	3 cut(s)	208, 432, 702
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	581, 719
BspT107I	GGYRCC	1 cut(s)	430
BspTI	CTTAAG	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	591, 784
BssECI	CCNNGG	2 cut(s)	210, 757
BssMI	GATC	6 cut(s)	313, 352, 586, 724, 767, 859
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	210, 757
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	204, 668
Bst4CI	ACNGT	3 cut(s)	522, 612, 856
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	2 cut(s)	458, 511
BstBAI	YACGTR	1 cut(s)	574
BstDEI	CTNAG	3 cut(s)	47, 347, 598
BstDSI	CCRYGG	1 cut(s)	757
BstF5I	GGATG	2 cut(s)	380, 506
BstH2I	RGCGCY	2 cut(s)	29, 171
BstHHI	GCGC	2 cut(s)	28, 170
BstKTI	GATC	6 cut(s)	316, 355, 589, 727, 770, 862
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	6 cut(s)	313, 352, 586, 724, 767, 859
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 41, 458, 511
BstNI	CCWGG	2 cut(s)	204, 668
BstSCI	CCNGG	3 cut(s)	174, 202, 666
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	346, 436
BstV2I	GAAGAC	3 cut(s)	297, 348, 808
BstX2I	RGATCY	2 cut(s)	313, 586
BstYI	RGATCY	2 cut(s)	313, 586
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	644
BtgI	CCRYGG	1 cut(s)	757
BtsCI	GGATG	2 cut(s)	380, 506
BtsIMutI	CAGTG	3 cut(s)	46, 355, 791
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	2 cut(s)	28, 170
Cfr13I	GGNCC	5 cut(s)	206, 268, 643, 670, 701
CseI	GACGC	1 cut(s)	805
Csp6I	GTAC	4 cut(s)	367, 431, 518, 542
CviAII	CATG	3 cut(s)	193, 758, 839
CviJI	RGCY	9 cut(s)	35, 221, 243, 304, 449, 568, 644, 650, 696
CviKI_1	RGCY	9 cut(s)	35, 221, 243, 304, 449, 568, 644, 650, 696
CviQI	GTAC	4 cut(s)	367, 431, 518, 542
DdeI	CTNAG	3 cut(s)	47, 347, 598
DpnI	GATC	6 cut(s)	315, 354, 588, 726, 769, 861
DpnII	GATC	6 cut(s)	313, 352, 586, 724, 767, 859
DraI	TTTAAA	2 cut(s)	90, 468
DraIII	CACNNNGTG	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	210, 757
Eco47I	GGWCC	4 cut(s)	206, 268, 670, 701
Eco57I	CTGAAG	2 cut(s)	302, 654
Eco72I	CACGTG	1 cut(s)	574
EcoO109I	RGGNCCY	3 cut(s)	206, 670, 701
EcoRI	GAATTC	1 cut(s)	834
EcoRII	CCWGG	2 cut(s)	202, 666
EcoT14I	CCWWGG	2 cut(s)	210, 757
ErhI	CCWWGG	2 cut(s)	210, 757
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	3 cut(s)	196, 761, 842
FaiI	YATR	9 cut(s)	194, 376, 710, 744, 749, 759, 764, 840, 846
FalI	AAGNNNNNCTT	4 cut(s)	282, 314, 800, 832
FaqI	GGGAC	2 cut(s)	192, 714
FatI	CATG	3 cut(s)	192, 757, 838
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	2 cut(s)	360, 450
FokI	GGATG	2 cut(s)	367, 513
Fsp4HI	GCNGC	2 cut(s)	360, 450
GlaI	GCGC	2 cut(s)	27, 169
GluI	GCNGC	2 cut(s)	360, 450
GsaI	CCCAGC	3 cut(s)	407, 700, 831
GsuI	CTGGAG	1 cut(s)	15
HaeII	RGCGCY	2 cut(s)	29, 171
HaeIII	GGCC	1 cut(s)	644
HapII	CCGG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	805
HhaI	GCGC	2 cut(s)	28, 170
Hin1II	CATG	3 cut(s)	196, 761, 842
Hin6I	GCGC	2 cut(s)	26, 168
HinP1I	GCGC	2 cut(s)	26, 168
HindIII	AAGCTT	2 cut(s)	302, 648
HinfI	GANTC	4 cut(s)	51, 82, 536, 813
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	4 cut(s)	260, 350, 424, 746
Hpy188I	TCNGA	2 cut(s)	15, 526
Hpy188III	TCNNGA	5 cut(s)	79, 333, 626, 808, 839
HpyAV	CCTTC	6 cut(s)	104, 151, 249, 386, 683, 689
HpyCH4III	ACNGT	3 cut(s)	522, 612, 856
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	8 cut(s)	119, 362, 452, 461, 514, 561, 583, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 41, 458, 511
HpyF3I	CTNAG	3 cut(s)	47, 347, 598
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	3 cut(s)	196, 761, 842
HspAI	GCGC	2 cut(s)	26, 168
KpnI	GGTACC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	6 cut(s)	313, 352, 586, 724, 767, 859
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	2 cut(s)	346, 436
LweI	GCATC	1 cut(s)	470
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	6 cut(s)	315, 354, 588, 726, 769, 861
MboI	GATC	6 cut(s)	313, 352, 586, 724, 767, 859
MboII	GAAGA	7 cut(s)	173, 302, 308, 353, 401, 647, 808
MflI	RGATCY	2 cut(s)	313, 586
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	5 cut(s)	437, 494, 686, 834, 867
MlyI	GAGTC	3 cut(s)	45, 76, 822
MseI	TTAA	4 cut(s)	89, 285, 300, 467
MslI	CAYNNNNRTG	1 cut(s)	843
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	3 cut(s)	176, 204, 668
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	2 cut(s)	204, 668
MwoI	GCNNNNNNNGC	4 cut(s)	32, 41, 458, 511
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	757
NdeII	GATC	6 cut(s)	313, 352, 586, 724, 767, 859
NlaIII	CATG	3 cut(s)	196, 761, 842
NlaIV	GGNNCC	3 cut(s)	208, 432, 702
NmuCI	GTSAC	1 cut(s)	752
PagI	TCATGA	1 cut(s)	838
PctI	GAATGC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	361, 451
PleI	GAGTC	3 cut(s)	45, 76, 821
PmaCI	CACGTG	1 cut(s)	574
PmlI	CACGTG	1 cut(s)	574
PpsI	GAGTC	3 cut(s)	45, 76, 821
Ppu21I	YACGTR	1 cut(s)	574
PpuMI	RGGWCCY	3 cut(s)	206, 670, 701
Psp5II	RGGWCCY	3 cut(s)	206, 670, 701
Psp6I	CCWGG	2 cut(s)	202, 666
PspCI	CACGTG	1 cut(s)	574
PspFI	CCCAGC	3 cut(s)	403, 696, 827
PspGI	CCWGG	2 cut(s)	202, 666
PspN4I	GGNNCC	3 cut(s)	208, 432, 702
PspPI	GGNCC	5 cut(s)	206, 268, 643, 670, 701
PspPPI	RGGWCCY	3 cut(s)	206, 670, 701
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	2 cut(s)	313, 586
RsaI	GTAC	4 cut(s)	368, 432, 519, 543
RsaNI	GTAC	4 cut(s)	367, 431, 518, 542
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	4 cut(s)	89, 285, 300, 467
SatI	GCNGC	2 cut(s)	360, 450
Sau3AI	GATC	6 cut(s)	313, 352, 586, 724, 767, 859
Sau96I	GGNCC	5 cut(s)	206, 268, 643, 670, 701
ScaI	AGTACT	3 cut(s)	368, 519, 543
SchI	GAGTC	3 cut(s)	45, 76, 822
ScrFI	CCNGG	3 cut(s)	176, 204, 668
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	470
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	4 cut(s)	206, 268, 670, 701
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	5 cut(s)	437, 494, 686, 834, 867
StyD4I	CCNGG	3 cut(s)	174, 202, 666
StyI	CCWWGG	2 cut(s)	210, 757
TaaI	ACNGT	3 cut(s)	522, 612, 856
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	6 cut(s)	80, 371, 625, 682, 723, 850
TasI	AATT	5 cut(s)	437, 494, 686, 834, 867
TatI	WGTACW	3 cut(s)	366, 517, 541
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	4 cut(s)	89, 285, 300, 467
Tru9I	TTAA	4 cut(s)	89, 285, 300, 467
TscAI	CASTG	3 cut(s)	46, 355, 791
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	2 cut(s)	359, 449
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	3 cut(s)	213, 827, 855
TspRI	CASTG	3 cut(s)	46, 355, 791
Vha464I	CTTAAG	1 cut(s)	299
VpaK11BI	GGWCC	4 cut(s)	206, 268, 670, 701
XapI	RAATTY	3 cut(s)	437, 494, 834
ZrmI	AGTACT	3 cut(s)	368, 519, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.