Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006787

Physical Location & Seq

Genomic Coordinates Reverse (-)

25226741 .. 25227631

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCCCAAAAACCCAAATCACGACGCAAAACCACAAAAATCGAACAAACCCCAACACTCCCAATCCAAAACCCGACCCCACCAGAGTTCCATTTTGCCATAGCCAGGATCGCGGTGTCTCAGATCAGCCAATCAGTCGGATTCAAATCAACGAAGCCCTCCGCACTCGAAACCCTGACCCACATCGCCGTCAAGTACATCGGCGCCGTAGCCTCCGCCTCGGCCTCCTACGCCGCCATGGCCAAGCGCACCAACACGAACGTCTTCGACTTCGCCAACGCCCTCCACGACTTGCAGTCGGTGCAGGGATTCAGAGGCGCCTCCGCCCTCCACGAAAACGGATTCTGCGTATTGGGTTCGAGCGTTTTGAGCGATCTCGCCGGGTTCGTGAGGTGGAATCGGGAAACCCCCTTCGCCAGGCCGATTCCGCGGGTGGAGAAATTGGGCGAGGAGAAAAGGGGAAATGGGGTTCCCATTCCGCCGGAACTGGATTCCCGGAGGGGCTTGCACGTGCCGAGATGGCTGCCGGCGTTTCCGGACATGGGGAAGGAGGTTGGGAAGAGGAGGAATGGGGAGGAGCTGTGGGAGAATAGTAAGAGGGGGAGAGTGAGGTTTAGGGTCGGAGGAGGGGAGGAGGAGAGTGGGGTGGTGGGGGGAATGGGTGTGGATTTGAGGAGCGGGGTGTGTAGAGGAGGGAAGAGGGTGTCTTGTAGTAACAGTAAAATTGGTTACACTAATTTCAGTACCAGAACAAGAATTCATGAATTTGTTGATGATGATGATGATGATGGTGATAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Bromo_TP TAF8_C

Protein Analysis

268

Amino Acids

29.32

Weight (kDa)

9.79

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31240
fragaria_vesca	FvH4_3g12040
malus_domestica	MD05G1255100.v1.1 MD10G1235200.v1.1
prunus_persica	Prupe.4G108700_v2.0.a1
pyrus_communis	pycom05g23330 pycom10g19690
rosa_chinensis	RchiOBHm_Chr3g0490931 RchiOBHm_Chr5g0019751
rosa_laevigata	RLG00000032465 RLG00000035697
rosa_multiflora	Rmu_sc0000652.1_g000024 Rmu_sc0006747.1_g000002 Rmu_sc0006747.1_g000018 Rmu_sc0041921.1_g000001 Rmu_ssc0000062.1_g000026
rosa_roxburghii	Rroxscaffold_1G00058380
rosa_rugosa	Rorug05G0053500 Rorug05G0361900
rosa_samantha	Rh3DG334700 Rh4CG166900 Rh5AG144100 Rh5BG142800 Rh5CG154600 Rh5DG143100
rosa_wichuraiana	Rw5G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	203, 317
AccBSI	CCGCTC	1 cut(s)	678
AccII	CGCG	2 cut(s)	113, 430
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	9 cut(s)	113, 162, 216, 234, 324, 428, 430, 479, 678
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	2 cut(s)	756, 764
AcvI	CACGTG	1 cut(s)	511
AcyI	GRCGYC	2 cut(s)	204, 318
AfaI	GTAC	2 cut(s)	197, 745
AfiI	CCNNNNNNNGG	3 cut(s)	105, 417, 542
AgsI	TTSAA	1 cut(s)	145
AhdI	GACNNNNNGTC	1 cut(s)	295
AjnI	CCWGG	2 cut(s)	104, 416
AloI	GAACNNNNNNTCC	2 cut(s)	453, 485
AluBI	AGCT	1 cut(s)	580
AluI	AGCT	1 cut(s)	580
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	3 cut(s)	222, 240, 419
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	2 cut(s)	756, 764
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	3 cut(s)	206, 249, 320
AsuC2I	CCSGG	2 cut(s)	382, 496
AsuHPI	GGTGA	1 cut(s)	803
BalI	TGGCCA	1 cut(s)	242
BanI	GGYRCC	2 cut(s)	203, 317
BbrPI	CACGTG	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	2 cut(s)	513, 782
BceAI	ACGGC	2 cut(s)	173, 191
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BciT130I	CCWGG	2 cut(s)	106, 418
BcnI	CCSGG	2 cut(s)	382, 496
BcoDI	GTCTC	1 cut(s)	123
BfoI	RGCGCY	2 cut(s)	207, 321
BglI	GCCNNNNNGGC	2 cut(s)	239, 520
BisI	GCNGC	2 cut(s)	234, 524
BlsI	GCNGC	2 cut(s)	235, 525
Bme1390I	CCNGG	4 cut(s)	106, 382, 418, 496
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmiI	GGNNCC	3 cut(s)	205, 319, 471
BmrFI	CCNGG	4 cut(s)	106, 382, 418, 496
BpiI	GAAGAC	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	382, 496
BsaAI	YACGTR	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	145
BsaHI	GRCGYC	2 cut(s)	204, 318
BsaJI	CCNNGG	3 cut(s)	219, 237, 428
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 417, 542
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	145
BseAI	TCCGGA	1 cut(s)	535
BseBI	CCWGG	2 cut(s)	106, 418
BseDI	CCNNGG	3 cut(s)	219, 237, 428
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	3 cut(s)	105, 417, 542
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	8 cut(s)	464, 577, 590, 639, 647, 650, 688, 705
BseXI	GCAGC	1 cut(s)	510
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	2 cut(s)	113, 430
BshFI	GGCC	3 cut(s)	224, 242, 421
BshNI	GGYRCC	2 cut(s)	203, 317
BsiSI	CCGG	5 cut(s)	381, 482, 496, 527, 536
BslI	CCNNNNNNNGG	3 cut(s)	105, 417, 542
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	224, 242, 421
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	108, 123, 373
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	9 cut(s)	113, 162, 216, 234, 324, 428, 430, 479, 678
BspANI	GGCC	3 cut(s)	224, 242, 421
BspCNI	CTCAG	1 cut(s)	133
BspEI	TCCGGA	1 cut(s)	535
BspFNI	CGCG	2 cut(s)	113, 430
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	3 cut(s)	205, 319, 471
BspPI	GGATC	1 cut(s)	116
BspT107I	GGYRCC	2 cut(s)	203, 317
BsrBI	CCGCTC	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	3 cut(s)	219, 237, 428
BssMI	GATC	3 cut(s)	108, 123, 373
BssNI	GRCGYC	2 cut(s)	204, 318
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	106, 418
Bst4CI	ACNGT	1 cut(s)	719
Bst6I	CTCTTC	2 cut(s)	554, 692
BstACI	GRCGYC	2 cut(s)	204, 318
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	506, 528
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	2 cut(s)	237, 428
BstENI	CCTNNNNNAGG	1 cut(s)	415
BstFNI	CGCG	2 cut(s)	113, 430
BstH2I	RGCGCY	2 cut(s)	207, 321
BstHHI	GCGC	3 cut(s)	206, 249, 320
BstKTI	GATC	3 cut(s)	111, 126, 376
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	3 cut(s)	108, 123, 373
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 230, 239, 301, 369, 427, 520
BstNI	CCWGG	2 cut(s)	106, 418
BstSCI	CCNGG	4 cut(s)	104, 380, 416, 494
BstUI	CGCG	2 cut(s)	113, 430
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	224, 242, 421
BtgI	CCRYGG	2 cut(s)	237, 428
BtgZI	GCGATG	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	506, 528
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	3 cut(s)	206, 249, 320
Cfr10I	RCCGGY	1 cut(s)	526
Cfr42I	CCGCGG	1 cut(s)	431
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	196, 744
CviAII	CATG	3 cut(s)	238, 541, 761
CviQI	GTAC	2 cut(s)	196, 744
DdeI	CTNAG	1 cut(s)	120
DinI	GGCGCC	2 cut(s)	205, 319
DpnI	GATC	3 cut(s)	110, 125, 375
DpnII	GATC	3 cut(s)	108, 123, 373
DriI	GACNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	554, 692
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	2 cut(s)	554, 692
EciI	GGCGGA	3 cut(s)	205, 313, 468
Eco130I	CCWWGG	1 cut(s)	237
Eco72I	CACGTG	1 cut(s)	511
EcoNI	CCTNNNNNAGG	1 cut(s)	415
EcoRI	GAATTC	1 cut(s)	756
EcoRII	CCWGG	2 cut(s)	104, 416
EcoT14I	CCWWGG	1 cut(s)	237
EgeI	GGCGCC	2 cut(s)	205, 319
EheI	GGCGCC	2 cut(s)	205, 319
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	3 cut(s)	241, 544, 764
FaiI	YATR	4 cut(s)	101, 239, 542, 762
FatI	CATG	3 cut(s)	237, 540, 760
FauI	CCCGC	2 cut(s)	423, 671
Fnu4HI	GCNGC	2 cut(s)	234, 524
Fsp4HI	GCNGC	2 cut(s)	234, 524
GlaI	GCGC	3 cut(s)	205, 248, 319
GluI	GCNGC	2 cut(s)	234, 524
HaeII	RGCGCY	2 cut(s)	207, 321
HaeIII	GGCC	3 cut(s)	224, 242, 421
HapII	CCGG	5 cut(s)	381, 482, 496, 527, 536
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	3 cut(s)	206, 249, 320
Hin1I	GRCGYC	2 cut(s)	204, 318
Hin1II	CATG	3 cut(s)	241, 544, 764
Hin6I	GCGC	3 cut(s)	204, 247, 318
HinP1I	GCGC	3 cut(s)	204, 247, 318
HinfI	GANTC	6 cut(s)	141, 309, 342, 397, 424, 491
HpaII	CCGG	5 cut(s)	381, 482, 496, 527, 536
HphI	GGTGA	1 cut(s)	803
Hpy188I	TCNGA	4 cut(s)	123, 140, 314, 623
Hpy188III	TCNNGA	5 cut(s)	21, 388, 401, 536, 761
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	421, 541
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	2 cut(s)	261, 510
HpyCH4V	TGCA	3 cut(s)	295, 304, 508
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 230, 239, 301, 369, 427, 520
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	261, 510
Hsp92I	GRCGYC	2 cut(s)	204, 318
Hsp92II	CATG	3 cut(s)	241, 544, 764
HspAI	GCGC	3 cut(s)	204, 247, 318
KasI	GGCGCC	2 cut(s)	203, 317
Kpn2I	TCCGGA	1 cut(s)	535
KroI	GCCGGC	1 cut(s)	526
KroNI	GCCGGC	1 cut(s)	528
KspI	CCGCGG	1 cut(s)	431
Kzo9I	GATC	3 cut(s)	108, 123, 373
LmnI	GCTCC	2 cut(s)	577, 675
Lsp1109I	GCAGC	1 cut(s)	510
MaeII	ACGT	2 cut(s)	261, 510
MaeIII	GTNAC	2 cut(s)	713, 728
MalI	GATC	3 cut(s)	110, 125, 375
MbiI	CCGCTC	1 cut(s)	678
MboI	GATC	3 cut(s)	108, 123, 373
MboII	GAAGA	3 cut(s)	256, 571, 709
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	5 cut(s)	440, 723, 736, 756, 764
MluNI	TGGCCA	1 cut(s)	242
Mly113I	GGCGCC	2 cut(s)	204, 318
MmeI	TCCRAC	2 cut(s)	118, 601
Mox20I	TGGCCA	1 cut(s)	242
MroI	TCCGGA	1 cut(s)	535
MroNI	GCCGGC	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	5 cut(s)	381, 482, 496, 527, 536
MspR9I	CCNGG	4 cut(s)	106, 382, 418, 496
MvaI	CCWGG	2 cut(s)	106, 418
MvnI	CGCG	2 cut(s)	113, 430
MwoI	GCNNNNNNNGC	7 cut(s)	110, 230, 239, 301, 369, 427, 520
NaeI	GCCGGC	1 cut(s)	528
NarI	GGCGCC	2 cut(s)	204, 318
NciI	CCSGG	2 cut(s)	382, 496
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	3 cut(s)	108, 123, 373
NgoMIV	GCCGGC	1 cut(s)	526
NlaIII	CATG	3 cut(s)	241, 544, 764
NlaIV	GGNNCC	3 cut(s)	205, 319, 471
NmeAIII	GCCGAG	2 cut(s)	200, 540
PagI	TCATGA	1 cut(s)	760
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 345, 384
PdiI	GCCGGC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	6 cut(s)	141, 309, 342, 397, 424, 491
PfoI	TCCNGGA	1 cut(s)	494
PkrI	GCNGC	2 cut(s)	235, 525
PluTI	GGCGCC	2 cut(s)	207, 321
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
Ppu21I	YACGTR	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	104, 416
PspCI	CACGTG	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	104, 416
PspN4I	GGNNCC	3 cut(s)	205, 319, 471
RsaI	GTAC	2 cut(s)	197, 745
RsaNI	GTAC	2 cut(s)	196, 744
SacII	CCGCGG	1 cut(s)	431
SatI	GCNGC	2 cut(s)	234, 524
Sau3AI	GATC	3 cut(s)	108, 123, 373
ScrFI	CCNGG	4 cut(s)	106, 382, 418, 496
SetI	ASST	6 cut(s)	264, 395, 513, 555, 582, 614
SfoI	GGCGCC	2 cut(s)	205, 319
Sfr303I	CCGCGG	1 cut(s)	431
SgrBI	CCGCGG	1 cut(s)	431
Sse9I	AATT	5 cut(s)	440, 723, 736, 756, 764
SsiI	CCGC	9 cut(s)	113, 162, 216, 234, 324, 428, 430, 479, 678
SspDI	GGCGCC	2 cut(s)	203, 317
StyD4I	CCNGG	4 cut(s)	104, 380, 416, 494
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	2 cut(s)	264, 513
TaqI	TCGA	4 cut(s)	42, 168, 267, 359
TasI	AATT	5 cut(s)	440, 723, 736, 756, 764
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	6 cut(s)	141, 309, 342, 397, 424, 491
TseI	GCWGC	1 cut(s)	523
TspDTI	ATGAA	2 cut(s)	749, 777
TspGWI	ACGGA	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	415
XapI	RAATTY	2 cut(s)	756, 764
XmnI	GAANNNNTTC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.