Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041921.1

Orthogroup ID

OG0006787

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 412

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041921.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgcccccaaaatcaaaacccaaaaagcgcaaaaccccaaaaccagtaatcattcccacgccggaaaacccaaccccgtcggagttctccaccgccatagccagaaccggcgtcgcccagatctgccactcgatcggcttcaaggtcacgcagctctccgccctcgaaacattaacccacgtcgcgatcaactacctcgtggccatagccaagtcgtcggcctcatacgccgccaaggccaaccgcaccgactcgaacctcttggacttcacgaacgcaatccacgacttgtcgttggtgcagggcttcaacggcgcgtcggagctccacaggagctgcgttttgggctcgactgtgttgaaggacctggccaagttcgtggagtatactgatgagactccgtttatgtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Bromo_TP TAF8_C

Protein Analysis

137

Amino Acids

14.9

Weight (kDa)

9.17

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31240
fragaria_vesca	FvH4_3g12040
malus_domestica	MD05G1255100.v1.1 MD10G1235200.v1.1
prunus_persica	Prupe.4G108700_v2.0.a1
pyrus_communis	pycom05g23330 pycom10g19690
rosa_chinensis	RchiOBHm_Chr3g0490931 RchiOBHm_Chr5g0019751
rosa_laevigata	RLG00000032465 RLG00000035697
rosa_multiflora	Rmu_sc0000652.1_g000024 Rmu_sc0006747.1_g000002 Rmu_sc0006747.1_g000018 Rmu_sc0041921.1_g000001 Rmu_ssc0000062.1_g000026
rosa_roxburghii	Rroxscaffold_1G00058380
rosa_rugosa	Rorug05G0053500 Rorug05G0361900
rosa_samantha	Rh3DG334700 Rh4CG166900 Rh5AG144100 Rh5BG142800 Rh5CG154600 Rh5DG143100
rosa_wichuraiana	Rw5G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	386
AccII	CGCG	2 cut(s)	185, 317
AciI	CCGC	4 cut(s)	93, 159, 231, 244
AcoI	YGGCCR	2 cut(s)	201, 369
AcyI	GRCGYC	1 cut(s)	111
AgsI	TTSAA	3 cut(s)	142, 310, 361
AjiI	CACGTC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	3 cut(s)	154, 325, 336
AluI	AGCT	3 cut(s)	154, 325, 336
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	389
AlwNI	CAGNNNCTG	1 cut(s)	336
AoxI	GGCC	4 cut(s)	201, 219, 237, 369
ApeKI	GCWGC	2 cut(s)	151, 336
AspLEI	GCGC	2 cut(s)	30, 317
AspS9I	GGNCC	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	364
BalI	TGGCCA	2 cut(s)	203, 371
BanII	GRGCYC	2 cut(s)	327, 350
BauI	CACGAG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	163, 323
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	389
BglI	GCCNNNNNGGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	3 cut(s)	152, 231, 337
BlsI	GCNGC	3 cut(s)	153, 232, 338
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	163, 323
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	185, 317
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	203, 221, 239, 371
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	62, 108
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	4 cut(s)	203, 221, 239, 371
Bsp1286I	GDGCHC	2 cut(s)	327, 350
Bsp143I	GATC	3 cut(s)	120, 132, 186
Bsp68I	TCGCGA	1 cut(s)	185
BspACI	CCGC	4 cut(s)	93, 159, 231, 244
BspANI	GGCC	4 cut(s)	203, 221, 239, 371
BspFNI	CGCG	2 cut(s)	185, 317
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	3 cut(s)	120, 132, 186
BssNAI	GTATAC	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	234
Bst1107I	GTATAC	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	355
BstACI	GRCGYC	1 cut(s)	111
BstFNI	CGCG	2 cut(s)	185, 317
BstHHI	GCGC	2 cut(s)	30, 317
BstKTI	GATC	3 cut(s)	123, 135, 189
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	3 cut(s)	120, 132, 186
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 236, 312, 345
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstUI	CGCG	2 cut(s)	185, 317
BstV1I	GCAGC	2 cut(s)	163, 323
BstX2I	RGATCY	1 cut(s)	120
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	120
BstZ17I	GTATAC	1 cut(s)	387
BsuRI	GGCC	4 cut(s)	203, 221, 239, 371
BtrI	CACGTC	1 cut(s)	181
BtuMI	TCGCGA	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	336
CfoI	GCGC	2 cut(s)	30, 317
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	364
CseI	GACGC	2 cut(s)	100, 306
DpnI	GATC	3 cut(s)	122, 134, 188
DpnII	GATC	3 cut(s)	120, 132, 186
EaeI	YGGCCR	2 cut(s)	201, 369
EciI	GGCGGA	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	2 cut(s)	327, 350
Eco47I	GGWCC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	327, 350
ErhI	CCWWGG	1 cut(s)	234
FaiI	YATR	5 cut(s)	98, 206, 226, 387, 407
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	3 cut(s)	152, 231, 337
FriOI	GRGCYC	2 cut(s)	327, 350
Fsp4HI	GCNGC	3 cut(s)	152, 231, 337
GlaI	GCGC	2 cut(s)	29, 316
GluI	GCNGC	3 cut(s)	152, 231, 337
HaeIII	GGCC	4 cut(s)	203, 221, 239, 371
HapII	CCGG	2 cut(s)	62, 108
HgaI	GACGC	2 cut(s)	100, 306
HhaI	GCGC	2 cut(s)	30, 317
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	2 cut(s)	28, 315
HinP1I	GCGC	2 cut(s)	28, 315
HinfI	GANTC	2 cut(s)	251, 397
HpaII	CCGG	2 cut(s)	62, 108
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	2 cut(s)	82, 322
Hpy188III	TCNNGA	2 cut(s)	184, 271
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	5 cut(s)	82, 116, 185, 220, 322
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 236, 312, 345
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	2 cut(s)	28, 315
Kzo9I	GATC	3 cut(s)	120, 132, 186
LmnI	GCTCC	3 cut(s)	322, 330, 333
LpnPI	CCDG	9 cut(s)	57, 75, 115, 121, 131, 287, 316, 353, 380
Lsp1109I	GCAGC	2 cut(s)	163, 323
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	122, 134, 188
MboI	GATC	3 cut(s)	120, 132, 186
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	2 cut(s)	327, 350
MlsI	TGGCCA	2 cut(s)	203, 371
MluNI	TGGCCA	2 cut(s)	203, 371
MlyI	GAGTC	2 cut(s)	245, 391
MmeI	TCCRAC	2 cut(s)	60, 300
MnlI	CCTC	4 cut(s)	173, 206, 232, 269
Mox20I	TGGCCA	2 cut(s)	203, 371
MscI	TGGCCA	2 cut(s)	203, 371
MseI	TTAA	1 cut(s)	173
Msp20I	TGGCCA	2 cut(s)	203, 371
MspI	CCGG	2 cut(s)	62, 108
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	2 cut(s)	185, 317
MwoI	GCNNNNNNNGC	4 cut(s)	227, 236, 312, 345
NdeII	GATC	3 cut(s)	120, 132, 186
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	153, 232, 338
Ple19I	CGATCG	1 cut(s)	135
PleI	GAGTC	2 cut(s)	245, 391
PpsI	GAGTC	2 cut(s)	245, 391
PpuMI	RGGWCCY	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	364
PspPPI	RGGWCCY	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	120
PvuI	CGATCG	1 cut(s)	135
RruI	TCGCGA	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	152, 231, 337
Sau3AI	GATC	3 cut(s)	120, 132, 186
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	2 cut(s)	245, 391
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	2 cut(s)	327, 350
SetI	ASST	8 cut(s)	147, 156, 183, 198, 261, 327, 338, 369
SinI	GGWCC	1 cut(s)	364
SsiI	CCGC	4 cut(s)	93, 159, 231, 244
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	4 cut(s)	131, 165, 254, 350
TauI	GCSGC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	151, 336
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.