Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000652.1

Orthogroup ID

OG0006787

Physical Location & Seq

Genomic Coordinates Reverse (-)

87584 .. 88863

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000652.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggagttgtttcgagcttttcaaatctaccagaaagtgaggatacaatgttctatggtattcttcttccacctctctatcctcgttctgtttatctcctcgtctgcggccttctcttcgacatcagaccagattgcctcgctcttaatcacaagaaacctaaaccaaaacctcaaccatcttctccaaatcctctcttccaccaccatcgtgtcccaaaaatcaaaacccaaaaagtgcaaaaccccaaaaccagtaatcattcccacaccggaaaacccagccccgtcggagttctccaccatcatagccagaaaggctgtcgcccagatctccgccctcgaaaccctaacccaagtcgcagtcaactacctcatggctatagccaagtcctcggcctcatacaccgccaaggctaaccgcaccaactcaaacctcttccgacttcacaacgcaatccacgacttgcagtcggtgcctggtttcaagggcgcggcggagcttcacaggagctgcgttttttgggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Bromo_TP TAF8_C

Protein Analysis

176

Amino Acids

19.5

Weight (kDa)

10.02

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31240
fragaria_vesca	FvH4_3g12040
malus_domestica	MD05G1255100.v1.1 MD10G1235200.v1.1
prunus_persica	Prupe.4G108700_v2.0.a1
pyrus_communis	pycom05g23330 pycom10g19690
rosa_chinensis	RchiOBHm_Chr3g0490931 RchiOBHm_Chr5g0019751
rosa_laevigata	RLG00000032465 RLG00000035697
rosa_multiflora	Rmu_sc0000652.1_g000024 Rmu_sc0006747.1_g000002 Rmu_sc0006747.1_g000018 Rmu_sc0041921.1_g000001 Rmu_ssc0000062.1_g000026
rosa_roxburghii	Rroxscaffold_1G00058380
rosa_rugosa	Rorug05G0053500 Rorug05G0361900
rosa_samantha	Rh3DG334700 Rh4CG166900 Rh5AG144100 Rh5BG142800 Rh5CG154600 Rh5DG143100
rosa_wichuraiana	Rw5G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	475
AccII	CGCG	1 cut(s)	494
AciI	CCGC	6 cut(s)	107, 336, 408, 421, 494, 497
AgsI	TTSAA	2 cut(s)	23, 487
AhdI	GACNNNNNGTC	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	478
AleI	CACNNNNGTG	1 cut(s)	209
AloI	GAACNNNNNNTCC	2 cut(s)	34, 66
AluBI	AGCT	3 cut(s)	17, 502, 513
AluI	AGCT	3 cut(s)	17, 502, 513
AlwNI	CAGNNNCTG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	108, 396
ApeKI	GCWGC	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	3 cut(s)	186, 215, 311
BciT130I	CCWGG	1 cut(s)	480
BciVI	GTATCC	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	317
BglII	AGATCT	1 cut(s)	330
BisI	GCNGC	3 cut(s)	108, 495, 514
BlsI	GCNGC	3 cut(s)	109, 496, 515
Bme1390I	CCNGG	1 cut(s)	480
BmeRI	GACNNNNNGTC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	393, 411
BsaWI	WCCGGW	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	393, 411
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	500
BseYI	CCCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	110, 398
BshNI	GGYRCC	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	110, 398
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	6 cut(s)	107, 336, 408, 421, 494, 497
BspANI	GGCC	2 cut(s)	110, 398
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	393, 411
BssMI	GATC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	480
Bst6I	CTCTTC	3 cut(s)	121, 202, 443
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 475
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	110, 398
CaiI	CAGNNNCTG	1 cut(s)	513
CfoI	GCGC	1 cut(s)	494
CviAII	CATG	1 cut(s)	376
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DriI	GACNNNNNGTC	1 cut(s)	469
Eam1104I	CTCTTC	3 cut(s)	121, 202, 443
Eam1105I	GACNNNNNGTC	1 cut(s)	469
EarI	CTCTTC	3 cut(s)	121, 202, 443
EciI	GGCGGA	2 cut(s)	325, 512
Eco130I	CCWWGG	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	379
FaiI	YATR	5 cut(s)	56, 308, 377, 383, 403
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	1 cut(s)	375
Fnu4HI	GCNGC	3 cut(s)	108, 495, 514
Fsp4HI	GCNGC	3 cut(s)	108, 495, 514
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	3 cut(s)	108, 495, 514
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	110, 398
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	3 cut(s)	127, 292, 443
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	240, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 475
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	499, 510
Lsp1109I	GCAGC	1 cut(s)	500
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	6 cut(s)	55, 58, 108, 173, 189, 430
MflI	RGATCY	1 cut(s)	330
MmeI	TCCRAC	2 cut(s)	270, 466
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	317, 475
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	1 cut(s)	477
NmeAIII	GCCGAG	1 cut(s)	374
OliI	CACNNNNGTG	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	109, 496, 515
Psp6I	CCWGG	1 cut(s)	478
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	477
PstNI	CAGNNNCTG	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	3 cut(s)	108, 495, 514
Sau3AI	GATC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	480
SetI	ASST	8 cut(s)	19, 75, 162, 174, 375, 438, 504, 515
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	209
SsiI	CCGC	6 cut(s)	107, 336, 408, 421, 494, 497
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	411
TaqI	TCGA	3 cut(s)	13, 119, 342
TauI	GCSGC	2 cut(s)	110, 497
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseI	GCWGC	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.