FvH4_3g12040

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006787
Physical Location & Seq
Forward (+)
7142206 .. 7143452
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12040.t1

Sequence Viewer

Length: 837 bp
ATGCCCCCAAAACCCAAACCCAAAACCCCAAAACCACCAATCCTTCCCACACCGGAAAACCCAACCCCGTCGGAGTTCTCCACCGCGATAGCCAGAACCGCCGTCGCCCAGATCTGCCACTCGATCGGCTTCAAAGTCACACAGCTCTCCGCCCTCGAAGCCTTGACCCACGTCGCGATCAACTACCTCGTCGCCATAGCCAAGTCCTCCGCCTCATACGCCGCCAAGGCCAACCGCACCGACTCGAACCTCTTCGACTTCACCAACGCAATCCACGACCTGTCGTTTGTCCAGGGCTTCACCGGCGCGTCGGAGCTTCACCGGAGCTGCGTTCTGGGGTCGAGTGTGTTGAAGGACTTAGCAAAGTTCGTGGAGTACAGGGAGGAGACTCCATTTGCGTGGCCGATTCCGCGGCGCGAGGAAATAGGAGCACGAGGGAATGTTGTTCCGAGGAATCGGGAATCGAATTGCGCACATGTTCCGAGATGGCTGCCGGGTTTTCCGGAAGTTGGGGAAGCGAAAGTGGTGAAGAGGAGGAATGGGGAGGAGCTGTGGGAGAATGTGGTGGTTGAGAATGGGAATGGGGAAAGTGGGAATGGAAATGAGAATGGTGGGAATGGGAATAGGGAGTTGGGGGTGAAGAGTAAGAGGGGGAGAGTGAGGTTTAAGATTGGAGGGGTTGAGGAGAAAGGGTGTGTGGGAGTGAAAATGAGGAATGGGGTTTGCAGAGGAGGGAAAAGGGTGTGTTGGAATGGGAATGGAAATAATGTGTGCAATTTGAATACCGGGATTAGAATTGTTGGTGGAGTTGATGATGATGATGATGGAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

279

Amino Acids

30.13

Weight (kDa)

9.28

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 25 - 96 4e-17 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 472
AccII CGCG 5 cut(s) 86, 176, 308, 412, 417
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 8 cut(s) 84, 99, 150, 210, 222, 235, 410, 412
AcoI YGGCCR 1 cut(s) 401
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 509
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 3 cut(s) 133, 352, 781
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 291
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AluBI AGCT 4 cut(s) 145, 316, 327, 550
AluI AGCT 4 cut(s) 145, 316, 327, 550
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 2 cut(s) 228, 401
ApeKI GCWGC 2 cut(s) 327, 490
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 3 cut(s) 308, 417, 473
AsuC2I CCSGG 2 cut(s) 495, 787
AsuHPI GGTGA 5 cut(s) 253, 292, 311, 538, 649
BauI CACGAG 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 2 cut(s) 314, 477
BccI CCATC 2 cut(s) 480, 818
BceAI ACGGC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 2 cut(s) 495, 787
BcoDI GTCTC 1 cut(s) 380
BglI GCCNNNNNGGC 1 cut(s) 227
BglII AGATCT 1 cut(s) 111
BisI GCNGC 4 cut(s) 222, 328, 413, 491
BlsI GCNGC 4 cut(s) 223, 329, 414, 492
Bme1390I CCNGG 3 cut(s) 293, 495, 787
BmgBI CACGTC 1 cut(s) 172
BmrFI CCNGG 3 cut(s) 293, 495, 787
BoxI GACNNNNGTC 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 495, 787
BsaJI CCNNGG 4 cut(s) 225, 292, 410, 449
BsaWI WCCGGW 3 cut(s) 52, 321, 502
BsaXI ACNNNNNCTCC 4 cut(s) 536, 566, 677, 707
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 4 cut(s) 225, 292, 410, 449
BseLI CCNNNNNNNGG 1 cut(s) 509
BseRI GAGGAG 5 cut(s) 398, 547, 560, 698, 744
BseXI GCAGC 2 cut(s) 314, 477
Bsh1236I CGCG 5 cut(s) 86, 176, 308, 412, 417
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 2 cut(s) 230, 403
BsiEI CGRYCG 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 433
BsiSI CCGG 6 cut(s) 53, 303, 322, 494, 503, 786
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 380
BsnI GGCC 2 cut(s) 230, 403
Bsp1286I GDGCHC 1 cut(s) 433
Bsp13I TCCGGA 1 cut(s) 502
Bsp143I GATC 3 cut(s) 111, 123, 177
Bsp68I TCGCGA 1 cut(s) 176
BspACI CCGC 8 cut(s) 84, 99, 150, 210, 222, 235, 410, 412
BspANI GGCC 2 cut(s) 230, 403
BspEI TCCGGA 1 cut(s) 502
BspFNI CGCG 5 cut(s) 86, 176, 308, 412, 417
BsrFI RCCGGY 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 4 cut(s) 225, 292, 410, 449
BssMI GATC 3 cut(s) 111, 123, 177
BssSI CACGAG 1 cut(s) 432
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 293
Bst6I CTCTTC 3 cut(s) 257, 524, 635
BstDEI CTNAG 1 cut(s) 358
BstDSI CCRYGG 1 cut(s) 410
BstFNI CGCG 5 cut(s) 86, 176, 308, 412, 417
BstHHI GCGC 3 cut(s) 308, 417, 473
BstKTI GATC 3 cut(s) 114, 126, 180
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 3 cut(s) 111, 123, 177
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 6 cut(s) 98, 158, 218, 227, 303, 409
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 479
BstPAI GACNNNNGTC 1 cut(s) 170
BstSCI CCNGG 3 cut(s) 291, 493, 785
BstUI CGCG 5 cut(s) 86, 176, 308, 412, 417
BstV1I GCAGC 2 cut(s) 314, 477
BstX2I RGATCY 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 399
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 2 cut(s) 230, 403
BtgI CCRYGG 1 cut(s) 410
BtrI CACGTC 1 cut(s) 172
BtuMI TCGCGA 1 cut(s) 176
CfoI GCGC 3 cut(s) 308, 417, 473
Cfr10I RCCGGY 1 cut(s) 302
Cfr42I CCGCGG 1 cut(s) 413
CseI GACGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 376
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 1 cut(s) 476
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 1 cut(s) 358
DpnI GATC 3 cut(s) 113, 125, 179
DpnII GATC 3 cut(s) 111, 123, 177
EaeI YGGCCR 1 cut(s) 401
Eam1104I CTCTTC 3 cut(s) 257, 524, 635
EarI CTCTTC 3 cut(s) 257, 524, 635
EciI GGCGGA 2 cut(s) 139, 199
Eco130I CCWWGG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 479
FaiI YATR 3 cut(s) 197, 217, 477
FatI CATG 1 cut(s) 475
Fnu4HI GCNGC 4 cut(s) 222, 328, 413, 491
Fsp4HI GCNGC 4 cut(s) 222, 328, 413, 491
FspI TGCGCA 1 cut(s) 472
GlaI GCGC 3 cut(s) 307, 416, 472
GluI GCNGC 4 cut(s) 222, 328, 413, 491
HaeIII GGCC 2 cut(s) 230, 403
HapII CCGG 6 cut(s) 53, 303, 322, 494, 503, 786
HgaI GACGC 1 cut(s) 297
HhaI GCGC 3 cut(s) 308, 417, 473
Hin1II CATG 1 cut(s) 479
Hin6I GCGC 3 cut(s) 306, 415, 471
HinP1I GCGC 3 cut(s) 306, 415, 471
HinfI GANTC 5 cut(s) 242, 388, 406, 454, 461
HpaII CCGG 6 cut(s) 53, 303, 322, 494, 503, 786
HphI GGTGA 5 cut(s) 253, 292, 311, 538, 649
Hpy188I TCNGA 4 cut(s) 73, 313, 450, 483
Hpy188III TCNNGA 3 cut(s) 175, 458, 503
Hpy99I CGWCG 5 cut(s) 73, 107, 176, 194, 313
HpyAV CCTTC 2 cut(s) 53, 346
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 726, 774
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 158, 218, 227, 303, 409
HpyF3I CTNAG 1 cut(s) 358
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 479
HspAI GCGC 3 cut(s) 306, 415, 471
Kpn2I TCCGGA 1 cut(s) 502
KspI CCGCGG 1 cut(s) 413
Kzo9I GATC 3 cut(s) 111, 123, 177
LmnI GCTCC 4 cut(s) 313, 324, 428, 547
Lsp1109I GCAGC 2 cut(s) 314, 477
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 136
MalI GATC 3 cut(s) 113, 125, 179
MboI GATC 3 cut(s) 111, 123, 177
MboII GAAGA 3 cut(s) 244, 541, 652
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 3 cut(s) 466, 775, 795
MlyI GAGTC 2 cut(s) 236, 382
MmeI TCCRAC 3 cut(s) 51, 291, 728
MroI TCCGGA 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 666
MslI CAYNNNNRTG 1 cut(s) 397
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 6 cut(s) 53, 303, 322, 494, 503, 786
MspR9I CCNGG 3 cut(s) 293, 495, 787
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 5 cut(s) 86, 176, 308, 412, 417
MwoI GCNNNNNNNGC 6 cut(s) 98, 158, 218, 227, 303, 409
NciI CCSGG 2 cut(s) 495, 787
NdeII GATC 3 cut(s) 111, 123, 177
NlaIII CATG 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 136
NruI TCGCGA 1 cut(s) 176
NsbI TGCGCA 1 cut(s) 472
NspI RCATGY 1 cut(s) 479
PciI ACATGT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 406, 454, 461
PkrI GCNGC 4 cut(s) 223, 329, 414, 492
Ple19I CGATCG 1 cut(s) 126
PleI GAGTC 2 cut(s) 236, 382
PpsI GAGTC 2 cut(s) 236, 382
PscI ACATGT 1 cut(s) 475
PshAI GACNNNNGTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PsuI RGATCY 1 cut(s) 111
PvuI CGATCG 1 cut(s) 126
RruI TCGCGA 1 cut(s) 176
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 397
SacII CCGCGG 1 cut(s) 413
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 4 cut(s) 222, 328, 413, 491
Sau3AI GATC 3 cut(s) 111, 123, 177
SchI GAGTC 2 cut(s) 236, 382
ScrFI CCNGG 3 cut(s) 293, 495, 787
SduI GDGCHC 1 cut(s) 433
SetI ASST 9 cut(s) 147, 174, 189, 252, 282, 318, 329, 552, 665
Sfr303I CCGCGG 1 cut(s) 413
SgrAI CRCCGGYG 1 cut(s) 302
SgrBI CCGCGG 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 397
Sse9I AATT 3 cut(s) 466, 775, 795
SsiI CCGC 8 cut(s) 84, 99, 150, 210, 222, 235, 410, 412
StyD4I CCNGG 3 cut(s) 291, 493, 785
StyI CCWWGG 1 cut(s) 225
TaiI ACGT 1 cut(s) 174
TaqI TCGA 6 cut(s) 122, 156, 245, 255, 341, 464
TasI AATT 3 cut(s) 466, 775, 795
TatI WGTACW 1 cut(s) 375
TauI GCSGC 2 cut(s) 224, 415
TfiI GAWTC 3 cut(s) 406, 454, 461
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 2 cut(s) 327, 490
Tsp45I GTSAC 1 cut(s) 136
XceI RCATGY 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.