Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006787

Physical Location & Seq

Genomic Coordinates Forward (+)

5696419 .. 5697727

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G108700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCCCAAAAATCAAAATCAAAACGAAAAACACCAAGACAACAAGGACCCCCAACGACAAGCCCAAACCCAACCCCATCGGAGTTCTCATTCGCCATAGCCAGAATCGCAGCGTCTCAAATCAGTCAATCAGTCGGCTTCAAAGCCACGAAGCCTGCCGCCGTCGAAACCCTAGCCCACATCGCCATCAAGTACATCGAGGCCATAGCTTCCGCCTCAGCCTCCTACGCCGCCATGGCCAATCGCACCAACACTAACGTTTTCGACTTCACCAACGCCCTCCATGACTTGCAGTCGGTGCAAGGCTTCAAAGGCGCCTCCTTTCTCCACGAAAACGGCTTCTGCGTTTTGGGTTCGAGCGTTTTGACCGATCTCGCCAAATTCGTCAGCTGGAACGAGGAAACCCCATTCGCCAGGCCGATTCCGCGGGCCGAGAAATTGGATACAGAGAAACGGATTCCGTTTCCGGTGGAAACGGATTCCGGGAGGGATTTGCACGTGCCGAGATGGCTTCCAGCATTCCCGGATGTAAAGAAAACGGTCGCGAAGAGGAGGAATGGTGAGGAGTTGTGGGAGAATATGGTGGCTGGGAATGGCGGTGGTGGTGTTATGAATGAAAGTGAAAGTGAAAGAGTAAGTGAGAGTGGGAATTGGAATGGGAATGGTGGGAATGAGAAAGGGTTTTGCTTGGAATTGGGGGAGGAGAAGAAGATGGGGAGAGTGAGGTTTAGGATTGGATTGGGGGTTGAGGTGGAGGAGAAAGGGGTGGCGGGTTTGGGTTTGAATTTGAGAAGTGGGGTTTGTAGAGGAGGGAAAAGAGTATGTTGGAATAATAACAGTAAAATTGGTTACAATTTTGATGATGATGATAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Bromo_TP TAF8_C

Protein Analysis

293

Amino Acids

31.88

Weight (kDa)

9.11

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31240
fragaria_vesca	FvH4_3g12040
malus_domestica	MD05G1255100.v1.1 MD10G1235200.v1.1
prunus_persica	Prupe.4G108700_v2.0.a1
pyrus_communis	pycom05g23330 pycom10g19690
rosa_chinensis	RchiOBHm_Chr3g0490931 RchiOBHm_Chr5g0019751
rosa_laevigata	RLG00000032465 RLG00000035697
rosa_multiflora	Rmu_sc0000652.1_g000024 Rmu_sc0006747.1_g000002 Rmu_sc0006747.1_g000018 Rmu_sc0041921.1_g000001 Rmu_ssc0000062.1_g000026
rosa_roxburghii	Rroxscaffold_1G00058380
rosa_rugosa	Rorug05G0053500 Rorug05G0361900
rosa_samantha	Rh3DG334700 Rh4CG166900 Rh5AG144100 Rh5BG142800 Rh5CG154600 Rh5DG143100
rosa_wichuraiana	Rw5G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	2 cut(s)	427, 545
AciI	CCGC	7 cut(s)	159, 213, 231, 425, 427, 597, 770
AclI	AACGTT	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	380, 784
AcvI	CACGTG	1 cut(s)	499
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	142, 310, 784
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	2 cut(s)	209, 390
AluI	AGCT	2 cut(s)	209, 390
Alw26I	GTCTC	1 cut(s)	120
AoxI	GGCC	4 cut(s)	201, 237, 416, 429
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	380, 784
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	47, 429
AsuC2I	CCSGG	2 cut(s)	484, 524
AsuHPI	GGTGA	2 cut(s)	262, 572
AvaII	GGWCC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	314
BbrPI	CACGTG	1 cut(s)	499
BbvCI	CCTCAGC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	4 cut(s)	85, 194, 501, 706
BceAI	ACGGC	2 cut(s)	146, 352
BciT130I	CCWGG	1 cut(s)	415
BciVI	GTATCC	1 cut(s)	436
BcnI	CCSGG	2 cut(s)	484, 524
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	436
BglI	GCCNNNNNGGC	2 cut(s)	236, 508
BisI	GCNGC	3 cut(s)	111, 159, 231
BlsI	GCNGC	3 cut(s)	112, 160, 232
Bme1390I	CCNGG	3 cut(s)	415, 484, 524
Bme18I	GGWCC	1 cut(s)	47
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	47, 429
BmiI	GGNNCC	2 cut(s)	49, 316
BmrFI	CCNGG	3 cut(s)	415, 484, 524
Bpu10I	CCTNAGC	1 cut(s)	217
BpuMI	CCSGG	2 cut(s)	484, 524
BsaAI	YACGTR	1 cut(s)	499
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	234, 425
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	234, 425
BseGI	GGATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	5 cut(s)	565, 578, 716, 770, 822
BseXI	GCAGC	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	587
Bsh1236I	CGCG	2 cut(s)	427, 545
Bsh1285I	CGRYCG	1 cut(s)	543
BshFI	GGCC	4 cut(s)	203, 239, 418, 431
BshNI	GGYRCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	543
BsiSI	CCGG	3 cut(s)	467, 483, 524
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	4 cut(s)	203, 239, 418, 431
Bsp143I	GATC	1 cut(s)	370
Bsp19I	CCATGG	1 cut(s)	234
Bsp68I	TCGCGA	1 cut(s)	545
BspACI	CCGC	7 cut(s)	159, 213, 231, 425, 427, 597, 770
BspANI	GGCC	4 cut(s)	203, 239, 418, 431
BspCNI	CTCAG	1 cut(s)	230
BspFNI	CGCG	2 cut(s)	427, 545
BspLI	GGNNCC	2 cut(s)	49, 316
BspT107I	GGYRCC	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	234, 425
BssMI	GATC	1 cut(s)	370
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	541, 839
Bst6I	CTCTTC	1 cut(s)	542
BstACI	GRCGYC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	156, 429
BstDEI	CTNAG	1 cut(s)	217
BstDSI	CCRYGG	2 cut(s)	234, 425
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	2 cut(s)	427, 545
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	370
BstMCI	CGRYCG	1 cut(s)	543
BstMWI	GCNNNNNNNGC	8 cut(s)	107, 182, 227, 236, 298, 312, 424, 508
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	3 cut(s)	413, 482, 522
BstUI	CGCG	2 cut(s)	427, 545
BstV1I	GCAGC	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	4 cut(s)	203, 239, 418, 431
BtgI	CCRYGG	2 cut(s)	234, 425
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	532
BtuMI	TCGCGA	1 cut(s)	545
Cac8I	GCNNGC	2 cut(s)	156, 429
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	47, 429
Cfr42I	CCGCGG	1 cut(s)	428
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	2 cut(s)	235, 284
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	217
DinI	GGCGCC	1 cut(s)	316
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
DriI	GACNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	542
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	542
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	47
Eco72I	CACGTG	1 cut(s)	499
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	316
EheI	GGCGCC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	2 cut(s)	238, 287
FaiI	YATR	7 cut(s)	98, 206, 236, 285, 581, 611, 823
FatI	CATG	2 cut(s)	234, 283
FauI	CCCGC	2 cut(s)	420, 763
Fnu4HI	GCNGC	3 cut(s)	111, 159, 231
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	3 cut(s)	111, 159, 231
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	3 cut(s)	111, 159, 231
GsaI	CCCAGC	1 cut(s)	591
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	4 cut(s)	203, 239, 418, 431
HapII	CCGG	3 cut(s)	467, 483, 524
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	317
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	238, 287
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	4 cut(s)	105, 421, 457, 479
HpaII	CCGG	3 cut(s)	467, 483, 524
HphI	GGTGA	2 cut(s)	262, 572
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	544
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	541, 839
HpyCH4IV	ACGT	2 cut(s)	258, 498
HpyCH4V	TGCA	3 cut(s)	292, 301, 496
HpyF10VI	GCNNNNNNNGC	8 cut(s)	107, 182, 227, 236, 298, 312, 424, 508
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	2 cut(s)	258, 498
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	238, 287
HspAI	GCGC	1 cut(s)	315
KasI	GGCGCC	1 cut(s)	314
KspI	CCGCGG	1 cut(s)	428
Kzo9I	GATC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	2 cut(s)	258, 498
MaeIII	GTNAC	1 cut(s)	848
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	3 cut(s)	559, 718, 721
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	7 cut(s)	380, 437, 649, 692, 784, 843, 853
MluNI	TGGCCA	1 cut(s)	239
Mly113I	GGCGCC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	806
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	390, 427
MspI	CCGG	3 cut(s)	467, 483, 524
MspR9I	CCNGG	3 cut(s)	415, 484, 524
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	2 cut(s)	427, 545
MwoI	GCNNNNNNNGC	8 cut(s)	107, 182, 227, 236, 298, 312, 424, 508
NarI	GGCGCC	1 cut(s)	315
NciI	CCSGG	2 cut(s)	484, 524
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	238, 287
NlaIV	GGNNCC	2 cut(s)	49, 316
NmeAIII	GCCGAG	2 cut(s)	457, 528
NruI	TCGCGA	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 381
PctI	GAATGC	1 cut(s)	518
PfeI	GAWTC	4 cut(s)	105, 421, 457, 479
PfoI	TCCNGGA	2 cut(s)	482, 522
PkrI	GCNGC	3 cut(s)	112, 160, 232
PluTI	GGCGCC	1 cut(s)	318
PmaCI	CACGTG	1 cut(s)	499
PmlI	CACGTG	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	47
Psp1406I	AACGTT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	413
PspCI	CACGTG	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	49, 316
PspPI	GGNCC	2 cut(s)	47, 429
PspPPI	RGGWCCY	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	390
RruI	TCGCGA	1 cut(s)	545
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SacII	CCGCGG	1 cut(s)	428
SatI	GCNGC	3 cut(s)	111, 159, 231
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	2 cut(s)	47, 429
ScrFI	CCNGG	3 cut(s)	415, 484, 524
SetI	ASST	6 cut(s)	211, 261, 392, 501, 728, 753
SfoI	GGCGCC	1 cut(s)	316
Sfr303I	CCGCGG	1 cut(s)	428
SgrBI	CCGCGG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	7 cut(s)	380, 437, 649, 692, 784, 843, 853
SsiI	CCGC	7 cut(s)	159, 213, 231, 425, 427, 597, 770
SspDI	GGCGCC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	3 cut(s)	413, 482, 522
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	541, 839
TaiI	ACGT	2 cut(s)	261, 501
TaqI	TCGA	4 cut(s)	165, 198, 264, 356
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	7 cut(s)	380, 437, 649, 692, 784, 843, 853
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	2 cut(s)	161, 233
TfiI	GAWTC	4 cut(s)	105, 421, 457, 479
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	626, 630
TspGWI	ACGGA	3 cut(s)	450, 469, 491
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	2 cut(s)	380, 784
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.