RLG00000032465

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006787
Physical Location & Seq
Forward (+)
15530877 .. 15531770
894 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032465

Sequence Viewer

Length: 894 bp
ATGCCCCAAAAATCAAAACCCAAAAAGCGGAAAACCCCAAAACCAGTAATCATTCCCACGCCGGAAAATCCAACCCCGTCGGAGTTCTCCACCGCCATAGCCAGAACCGGCGTCGCCCAGATCTGCCACTCGATCGGCTTCAAGGTCACGCAGCTCTCCGCCCTCGAAACCTTAACCCACGTCGCGATCAACTACCTCGTGGCCATAGCCAAGTCCTCGGCCTCATACGCCGCCAAGGCCAACCGCACCGACTCAAACCTCTTCGACTTCACGAACGCAATCCACGACTTGTCGTTGGTGCAGGGCTTCAACGGCGCGTCGGAGCTTCACAGGAGCTGCGTTTTGGGCTCGACTGTGTTGAAGGACCTGGCCAAGTTCGTGGAGTATACTGATGAAACTCCGTTTATGTGGCCGATTCCGCAGCGCGAGAAAATGGGAATGGGAGTTGAGGAGGAATTGGTTTTGAGGAATCGGGAATCGGATTCCGGGAGGGGTGTTGGGTTACATGTTCCGAGATGGCTGCCTGGGTTGCCGGAAGTTGGGAAGCCGAAACCTGTTAAGAGGAGGAATGGGGAGGAGCTGTGGGAGAATGTGGTGGTTGGGAATGGGAATGGGAATGTGGATAGTGGGAATGGGAATGAGAATGTTGGGAATGGGAATGGGAATAGGAATAGGAATAGGGAGTTGGGGGTCAAGAGTAAGAGGGGAAGAGTGAGGTTTAAGATTGGAGTGATTGAGGAGAAGGGAGGAGGGTGTGTGGGAGTGAAGATGAGGAATGGGATTTGCAGAGGAGGGAAGAGAGTGTGTTGGAATGGTAATGGAAATAATGGGTCCAATTTGAATACTGGGATTAGGATCCTTGGAGTTGGTGATGATGGTGATGGAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

298

Amino Acids

32.15

Weight (kDa)

9.79

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 28 - 99 1.2e-16 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 386
AccII CGCG 3 cut(s) 185, 317, 426
AciI CCGC 6 cut(s) 28, 93, 159, 231, 244, 419
AclWI GGATC 2 cut(s) 850, 863
AcoI YGGCCR 3 cut(s) 201, 369, 410
AcyI GRCGYC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 27, 539
AflIII ACRYGT 1 cut(s) 505
AgsI TTSAA 4 cut(s) 142, 310, 361, 841
AjiI CACGTC 1 cut(s) 181
AjnI CCWGG 2 cut(s) 366, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 4 cut(s) 154, 325, 336, 580
AluI AGCT 4 cut(s) 154, 325, 336, 580
AlwI GGATC 2 cut(s) 850, 863
AlwNI CAGNNNCTG 1 cut(s) 336
AoxI GGCC 5 cut(s) 201, 219, 237, 369, 410
ApeKI GCWGC 4 cut(s) 151, 336, 421, 520
AspLEI GCGC 2 cut(s) 317, 426
AspS9I GGNCC 2 cut(s) 364, 831
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 881, 890
AvaII GGWCC 2 cut(s) 364, 831
BalI TGGCCA 2 cut(s) 203, 371
BamHI GGATCC 1 cut(s) 855
BanII GRGCYC 1 cut(s) 350
BauI CACGAG 1 cut(s) 197
BbvI GCAGC 4 cut(s) 163, 323, 433, 507
BccI CCATC 3 cut(s) 510, 869, 875
BceAI ACGGC 1 cut(s) 328
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BciT130I CCWGG 2 cut(s) 368, 525
BcnI CCSGG 1 cut(s) 487
BglI GCCNNNNNGGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 120
BisI GCNGC 5 cut(s) 152, 231, 337, 422, 521
BlsI GCNGC 5 cut(s) 153, 232, 338, 423, 522
Bme1390I CCNGG 3 cut(s) 368, 487, 525
Bme18I GGWCC 2 cut(s) 364, 831
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 364, 831
BmiI GGNNCC 2 cut(s) 832, 857
BmrFI CCNGG 3 cut(s) 368, 487, 525
BmrI ACTGGG 1 cut(s) 855
BmuI ACTGGG 1 cut(s) 855
BpuMI CCSGG 1 cut(s) 487
BsaBI GATNNNNATC 1 cut(s) 854
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 4 cut(s) 216, 234, 524, 859
BsaXI ACNNNNNCTCC 4 cut(s) 566, 596, 741, 771
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 539
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 44, 850
Bse8I GATNNNNATC 1 cut(s) 854
BseBI CCWGG 2 cut(s) 368, 525
BseDI CCNNGG 4 cut(s) 216, 234, 524, 859
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 2 cut(s) 27, 539
BseNI ACTGG 2 cut(s) 44, 850
BseRI GAGGAG 6 cut(s) 464, 577, 590, 752, 762, 804
BseXI GCAGC 4 cut(s) 163, 323, 433, 507
BsgI GTGCAG 1 cut(s) 320
Bsh1236I CGCG 3 cut(s) 185, 317, 426
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 5 cut(s) 203, 221, 239, 371, 412
BsiEI CGRYCG 1 cut(s) 135
BsiSI CCGG 4 cut(s) 62, 108, 486, 533
BslI CCNNNNNNNGG 2 cut(s) 27, 539
BsnI GGCC 5 cut(s) 203, 221, 239, 371, 412
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 4 cut(s) 120, 132, 186, 855
Bsp68I TCGCGA 1 cut(s) 185
BspACI CCGC 6 cut(s) 28, 93, 159, 231, 244, 419
BspANI GGCC 5 cut(s) 203, 221, 239, 371, 412
BspFNI CGCG 3 cut(s) 185, 317, 426
BspLI GGNNCC 2 cut(s) 832, 857
BspPI GGATC 2 cut(s) 850, 863
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 2 cut(s) 44, 850
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 4 cut(s) 216, 234, 524, 859
BssMI GATC 4 cut(s) 120, 132, 186, 855
BssNAI GTATAC 1 cut(s) 387
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 2 cut(s) 234, 859
Bst1107I GTATAC 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 2 cut(s) 368, 525
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 3 cut(s) 266, 703, 791
BstACI GRCGYC 1 cut(s) 111
BstFNI CGCG 3 cut(s) 185, 317, 426
BstHHI GCGC 2 cut(s) 317, 426
BstKTI GATC 4 cut(s) 123, 135, 189, 858
BstMBI GATC 4 cut(s) 120, 132, 186, 855
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 6 cut(s) 227, 236, 312, 345, 418, 529
BstNI CCWGG 2 cut(s) 368, 525
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 3 cut(s) 366, 485, 523
BstUI CGCG 3 cut(s) 185, 317, 426
BstV1I GCAGC 4 cut(s) 163, 323, 433, 507
BstX2I RGATCY 2 cut(s) 120, 855
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 2 cut(s) 120, 855
BstZ17I GTATAC 1 cut(s) 387
BsuRI GGCC 5 cut(s) 203, 221, 239, 371, 412
BtrI CACGTC 1 cut(s) 181
BtuMI TCGCGA 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 336
CfoI GCGC 2 cut(s) 317, 426
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 364, 831
CseI GACGC 2 cut(s) 100, 306
CviAII CATG 1 cut(s) 506
DpnI GATC 4 cut(s) 122, 134, 188, 857
DpnII GATC 4 cut(s) 120, 132, 186, 855
EaeI YGGCCR 3 cut(s) 201, 369, 410
Eam1104I CTCTTC 3 cut(s) 266, 703, 791
EarI CTCTTC 3 cut(s) 266, 703, 791
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 234, 859
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 364, 831
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 2 cut(s) 366, 523
EcoT14I CCWWGG 2 cut(s) 234, 859
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 2 cut(s) 234, 859
FaeI CATG 1 cut(s) 509
FaiI YATR 6 cut(s) 98, 206, 226, 387, 407, 507
FatI CATG 1 cut(s) 505
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 5 cut(s) 152, 231, 337, 422, 521
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 5 cut(s) 152, 231, 337, 422, 521
GlaI GCGC 2 cut(s) 316, 425
GluI GCNGC 5 cut(s) 152, 231, 337, 422, 521
HaeIII GGCC 5 cut(s) 203, 221, 239, 371, 412
HapII CCGG 4 cut(s) 62, 108, 486, 533
HgaI GACGC 2 cut(s) 100, 306
HhaI GCGC 2 cut(s) 317, 426
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 1 cut(s) 509
Hin6I GCGC 2 cut(s) 315, 424
HinP1I GCGC 2 cut(s) 315, 424
HinfI GANTC 5 cut(s) 251, 415, 469, 476, 482
HpaII CCGG 4 cut(s) 62, 108, 486, 533
HphI GGTGA 2 cut(s) 881, 890
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 4 cut(s) 82, 322, 481, 513
Hpy188III TCNNGA 4 cut(s) 184, 271, 473, 694
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 4 cut(s) 82, 116, 185, 322
HpyAV CCTTC 2 cut(s) 355, 736
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 301, 786
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 236, 312, 345, 418, 529
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 509
HspAI GCGC 2 cut(s) 315, 424
Kzo9I GATC 4 cut(s) 120, 132, 186, 855
LmnI GCTCC 3 cut(s) 322, 333, 577
Lsp1109I GCAGC 4 cut(s) 163, 323, 433, 507
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 145, 501
MalI GATC 4 cut(s) 122, 134, 188, 857
MboI GATC 4 cut(s) 120, 132, 186, 855
MboII GAAGA 4 cut(s) 253, 720, 778, 808
MflI RGATCY 2 cut(s) 120, 855
MhlI GDGCHC 1 cut(s) 350
MlsI TGGCCA 2 cut(s) 203, 371
MluCI AATT 2 cut(s) 455, 835
MluNI TGGCCA 2 cut(s) 203, 371
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 4 cut(s) 60, 95, 300, 788
Mox20I TGGCCA 2 cut(s) 203, 371
MscI TGGCCA 2 cut(s) 203, 371
MseI TTAA 3 cut(s) 173, 558, 720
Msp20I TGGCCA 2 cut(s) 203, 371
MspI CCGG 4 cut(s) 62, 108, 486, 533
MspR9I CCNGG 3 cut(s) 368, 487, 525
MvaI CCWGG 2 cut(s) 368, 525
MvnI CGCG 3 cut(s) 185, 317, 426
MwoI GCNNNNNNNGC 6 cut(s) 227, 236, 312, 345, 418, 529
NciI CCSGG 1 cut(s) 487
NdeII GATC 4 cut(s) 120, 132, 186, 855
NlaIII CATG 1 cut(s) 509
NlaIV GGNNCC 2 cut(s) 832, 857
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 145
NruI TCGCGA 1 cut(s) 185
NspI RCATGY 1 cut(s) 509
PciI ACATGT 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 4 cut(s) 415, 469, 476, 482
PfoI TCCNGGA 1 cut(s) 485
PkrI GCNGC 5 cut(s) 153, 232, 338, 423, 522
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PpuMI RGGWCCY 1 cut(s) 364
PscI ACATGT 1 cut(s) 505
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 2 cut(s) 366, 523
PspGI CCWGG 2 cut(s) 366, 523
PspN4I GGNNCC 2 cut(s) 832, 857
PspPI GGNCC 2 cut(s) 364, 831
PspPPI RGGWCCY 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 336
PsuI RGATCY 2 cut(s) 120, 855
PvuI CGATCG 1 cut(s) 135
RruI TCGCGA 1 cut(s) 185
SaqAI TTAA 3 cut(s) 173, 558, 720
SatI GCNGC 5 cut(s) 152, 231, 337, 422, 521
Sau3AI GATC 4 cut(s) 120, 132, 186, 855
Sau96I GGNCC 2 cut(s) 364, 831
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 3 cut(s) 368, 487, 525
SduI GDGCHC 1 cut(s) 350
SinI GGWCC 2 cut(s) 364, 831
Sse9I AATT 2 cut(s) 455, 835
SsiI CCGC 6 cut(s) 28, 93, 159, 231, 244, 419
StyD4I CCNGG 3 cut(s) 366, 485, 523
StyI CCWWGG 2 cut(s) 234, 859
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 183
TaqI TCGA 4 cut(s) 131, 165, 264, 350
TasI AATT 2 cut(s) 455, 835
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 415, 469, 476, 482
Tru1I TTAA 3 cut(s) 173, 558, 720
Tru9I TTAA 3 cut(s) 173, 558, 720
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 4 cut(s) 151, 336, 421, 520
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 1 cut(s) 390
VpaK11BI GGWCC 2 cut(s) 364, 831
XceI RCATGY 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.