MD10G1235200.v1.1

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006787
Physical Location & Seq
Reverse (-)
33115961 .. 33116740
780 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1235200.v1.1.491

Sequence Viewer

Length: 780 bp
ATGTCCCCAAAATCAAAATCCAAATCACGACGCAAAACCCCAAAACAAGATCAAACCCCAACACCCCCATTCCAAAACCCGACACCACCAGAGTTCCAATTCGCCATCGCCAGGATCGCGGTTTCTCAGATCACCCAATCGGTCGGATTCAAATCCACGAAGCCCTCCGCCCTCGATACCCTAACCCACATCGCCGTCAAGTACATCGGCGCCGTAGCCTCCGCCTCGGCCTCCTACGCAGCCATGACCAACCGCACCAAAACGAACGTCTTCGACCTCGCCAATGCCCTCCACGACTTGCAGTCGGTGCAGGGATTCCAGGGCGCCTCCGCCCTCCACGAAAGTGGATACTGCGTACTGGGTTCGAGTGTTTTGAGCGATCTCGCCGGCTTCGTGAGGCGGAATCAGGAAACCCCGTTCGCCAGACCGATTCCCCGGGGAGAGAAATTGGGTGCGGAGGAAGGTGGGACTGTGATTCCCATTCCGCGGGAATTGGATTCCCGGAGGGGTTTGCACGTGCCGAGATGGCTGCCGGCGTTGCCGGAGGTGAAGAAGGCGGTTGGGAAGAGAAGGAATGGGGAGGAGCTGTGGGAGAATGTGGCGGCCGGAAATGGTGGCGATGGCGGTGAAAGTGGGAGCGGGAATGGTAAGGGGATATGCTGGGAATCGGGGGTAAAAAGTAAGAGGGGGAGAGTGAGGTTTAGGATAGGAGGAGGGAAGGAGGAGGGAATGGGTGTGGATTTGAGGAGTGTGGTGCGTAGACGAAGGAAGAGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

260

Amino Acids

27.93

Weight (kDa)

10.44

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 31 - 100 2.1e-17 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 209, 323
AccBSI CCGCTC 1 cut(s) 639
AccI GTMKAC 1 cut(s) 760
AccII CGCG 2 cut(s) 119, 487
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 603
AcvI CACGTG 1 cut(s) 517
AcyI GRCGYC 2 cut(s) 210, 324
AfaI GTAC 2 cut(s) 203, 357
AfiI CCNNNNNNNGG 2 cut(s) 111, 486
AgsI TTSAA 1 cut(s) 151
AhdI GACNNNNNGTC 1 cut(s) 301
AjnI CCWGG 2 cut(s) 110, 318
AleI CACNNNNGTG 1 cut(s) 342
AloI GAACNNNNNNTCC 2 cut(s) 401, 433
AluBI AGCT 1 cut(s) 586
AluI AGCT 1 cut(s) 586
AlwI GGATC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 2 cut(s) 228, 603
ApeKI GCWGC 2 cut(s) 239, 529
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 212, 326
AsuC2I CCSGG 3 cut(s) 436, 437, 502
AsuHPI GGTGA 3 cut(s) 124, 559, 638
AvaI CYCGRG 1 cut(s) 435
BanI GGYRCC 2 cut(s) 209, 323
BbrPI CACGTG 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 251, 516
BccI CCATC 3 cut(s) 113, 519, 614
BceAI ACGGC 2 cut(s) 179, 197
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 2 cut(s) 112, 320
BciVI GTATCC 1 cut(s) 341
BcnI CCSGG 3 cut(s) 436, 437, 502
BfoI RGCGCY 2 cut(s) 213, 327
BfuI GTATCC 1 cut(s) 341
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 3 cut(s) 240, 530, 603
BlsI GCNGC 3 cut(s) 241, 531, 604
Bme1390I CCNGG 5 cut(s) 112, 320, 436, 437, 502
BmeRI GACNNNNNGTC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 211, 325
BmrFI CCNGG 5 cut(s) 112, 320, 436, 437, 502
BmrI ACTGGG 1 cut(s) 368
BmuI ACTGGG 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 262
BpuMI CCSGG 3 cut(s) 436, 437, 502
BsaAI YACGTR 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 151
BsaHI GRCGYC 2 cut(s) 210, 324
BsaJI CCNNGG 6 cut(s) 225, 319, 434, 435, 436, 485
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 486
Bse118I RCCGGY 2 cut(s) 386, 532
Bse1I ACTGG 1 cut(s) 363
Bse8I GATNNNNATC 1 cut(s) 151
BseBI CCWGG 2 cut(s) 112, 320
BseDI CCNNGG 6 cut(s) 225, 319, 434, 435, 436, 485
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 111, 486
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 4 cut(s) 596, 726, 737, 760
BseX3I CGGCCG 1 cut(s) 603
BseXI GCAGC 2 cut(s) 251, 516
BseYI CCCAGC 1 cut(s) 660
BsgI GTGCAG 1 cut(s) 329
Bsh1236I CGCG 2 cut(s) 119, 487
Bsh1285I CGRYCG 2 cut(s) 144, 606
BshFI GGCC 2 cut(s) 230, 605
BshNI GGYRCC 2 cut(s) 209, 323
BsiEI CGRYCG 2 cut(s) 144, 606
BsiHKCI CYCGRG 1 cut(s) 435
BsiSI CCGG 6 cut(s) 387, 436, 502, 533, 542, 606
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 111, 486
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 2 cut(s) 230, 605
BsoBI CYCGRG 1 cut(s) 435
Bsp143I GATC 4 cut(s) 49, 114, 129, 379
BspANI GGCC 2 cut(s) 230, 605
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 2 cut(s) 119, 487
BspLI GGNNCC 2 cut(s) 211, 325
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 2 cut(s) 209, 323
BsrBI CCGCTC 1 cut(s) 639
BsrFI RCCGGY 2 cut(s) 386, 532
BsrI ACTGG 1 cut(s) 363
BssAI RCCGGY 2 cut(s) 386, 532
BssECI CCNNGG 6 cut(s) 225, 319, 434, 435, 436, 485
BssMI GATC 4 cut(s) 49, 114, 129, 379
BssNI GRCGYC 2 cut(s) 210, 324
Bst2UI CCWGG 2 cut(s) 112, 320
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 2 cut(s) 560, 764
BstACI GRCGYC 2 cut(s) 210, 324
BstAPI GCANNNNNTGC 1 cut(s) 307
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 388, 534
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 485
BstFNI CGCG 2 cut(s) 119, 487
BstH2I RGCGCY 2 cut(s) 213, 327
BstHHI GCGC 2 cut(s) 212, 326
BstKTI GATC 4 cut(s) 52, 117, 132, 382
BstMBI GATC 4 cut(s) 49, 114, 129, 379
BstMCI CGRYCG 2 cut(s) 144, 606
BstMWI GCNNNNNNNGC 5 cut(s) 116, 236, 307, 526, 538
BstNI CCWGG 2 cut(s) 112, 320
BstSCI CCNGG 5 cut(s) 110, 318, 434, 435, 500
BstUI CGCG 2 cut(s) 119, 487
BstV1I GCAGC 2 cut(s) 251, 516
BstV2I GAAGAC 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 344
BstZI CGGCCG 1 cut(s) 603
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 230, 605
BtgI CCRYGG 1 cut(s) 485
BtgZI GCGATG 3 cut(s) 91, 175, 633
Cac8I GCNNGC 2 cut(s) 388, 534
CfoI GCGC 2 cut(s) 212, 326
Cfr10I RCCGGY 2 cut(s) 386, 532
Cfr42I CCGCGG 1 cut(s) 488
Cfr9I CCCGGG 1 cut(s) 435
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 202, 356
CviAII CATG 1 cut(s) 244
CviJI RGCY 8 cut(s) 163, 218, 230, 242, 390, 529, 586, 605
CviKI_1 RGCY 8 cut(s) 163, 218, 230, 242, 390, 529, 586, 605
CviQI GTAC 2 cut(s) 202, 356
DdeI CTNAG 1 cut(s) 126
DinI GGCGCC 2 cut(s) 211, 325
DpnI GATC 4 cut(s) 51, 116, 131, 381
DpnII GATC 4 cut(s) 49, 114, 129, 379
DriI GACNNNNNGTC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 603
EagI CGGCCG 1 cut(s) 603
Eam1104I CTCTTC 2 cut(s) 560, 764
Eam1105I GACNNNNNGTC 1 cut(s) 301
EarI CTCTTC 2 cut(s) 560, 764
EciI GGCGGA 4 cut(s) 157, 211, 319, 415
EclXI CGGCCG 1 cut(s) 603
Eco52I CGGCCG 1 cut(s) 603
Eco72I CACGTG 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 110, 318
EgeI GGCGCC 2 cut(s) 211, 325
EheI GGCGCC 2 cut(s) 211, 325
FaeI CATG 1 cut(s) 247
FaiI YATR 2 cut(s) 245, 658
FaqI GGGAC 1 cut(s) 481
FatI CATG 1 cut(s) 243
FauI CCCGC 2 cut(s) 480, 632
FblI GTMKAC 1 cut(s) 760
Fnu4HI GCNGC 3 cut(s) 240, 530, 603
Fsp4HI GCNGC 3 cut(s) 240, 530, 603
GlaI GCGC 2 cut(s) 211, 325
GluI GCNGC 3 cut(s) 240, 530, 603
GsaI CCCAGC 1 cut(s) 664
HaeII RGCGCY 2 cut(s) 213, 327
HaeIII GGCC 2 cut(s) 230, 605
HapII CCGG 6 cut(s) 387, 436, 502, 533, 542, 606
HgaI GACGC 1 cut(s) 39
HhaI GCGC 2 cut(s) 212, 326
Hin1I GRCGYC 2 cut(s) 210, 324
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 2 cut(s) 210, 324
HinP1I GCGC 2 cut(s) 210, 324
HinfI GANTC 7 cut(s) 147, 315, 403, 430, 475, 497, 665
HpaII CCGG 6 cut(s) 387, 436, 502, 533, 542, 606
HphI GGTGA 3 cut(s) 124, 559, 638
Hpy166II GTNNAC 1 cut(s) 761
Hpy188I TCNGA 2 cut(s) 129, 146
Hpy188III TCNNGA 3 cut(s) 27, 394, 407
Hpy8I GTNNAC 1 cut(s) 761
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 5 cut(s) 455, 547, 564, 712, 759
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 2 cut(s) 267, 516
HpyCH4V TGCA 3 cut(s) 301, 310, 514
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 236, 307, 526, 538
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 2 cut(s) 267, 516
Hsp92I GRCGYC 2 cut(s) 210, 324
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 2 cut(s) 210, 324
KasI GGCGCC 2 cut(s) 209, 323
KroI GCCGGC 2 cut(s) 386, 532
KroNI GCCGGC 2 cut(s) 388, 534
KspI CCGCGG 1 cut(s) 488
Kzo9I GATC 4 cut(s) 49, 114, 129, 379
LmnI GCTCC 2 cut(s) 583, 636
Lsp1109I GCAGC 2 cut(s) 251, 516
MaeII ACGT 2 cut(s) 267, 516
MalI GATC 4 cut(s) 51, 116, 131, 381
MbiI CCGCTC 1 cut(s) 639
MboI GATC 4 cut(s) 49, 114, 129, 379
MboII GAAGA 3 cut(s) 262, 562, 577
MluCI AATT 3 cut(s) 98, 446, 491
Mly113I GGCGCC 2 cut(s) 210, 324
MmeI TCCRAC 1 cut(s) 124
MroNI GCCGGC 2 cut(s) 386, 532
MroXI GAANNNNTTC 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 6 cut(s) 387, 436, 502, 533, 542, 606
MspR9I CCNGG 5 cut(s) 112, 320, 436, 437, 502
MvaI CCWGG 2 cut(s) 112, 320
MvnI CGCG 2 cut(s) 119, 487
MwoI GCNNNNNNNGC 5 cut(s) 116, 236, 307, 526, 538
NaeI GCCGGC 2 cut(s) 388, 534
NarI GGCGCC 2 cut(s) 210, 324
NciI CCSGG 3 cut(s) 436, 437, 502
NdeII GATC 4 cut(s) 49, 114, 129, 379
NgoMIV GCCGGC 2 cut(s) 386, 532
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 2 cut(s) 211, 325
NmeAIII GCCGAG 2 cut(s) 206, 546
OliI CACNNNNGTG 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdiI GCCGGC 2 cut(s) 388, 534
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 7 cut(s) 147, 315, 403, 430, 475, 497, 665
PfoI TCCNGGA 1 cut(s) 500
PkrI GCNGC 3 cut(s) 241, 531, 604
PluTI GGCGCC 2 cut(s) 213, 327
PmaCI CACGTG 1 cut(s) 517
PmlI CACGTG 1 cut(s) 517
Ppu21I YACGTR 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 110, 318
PspCI CACGTG 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 660
PspGI CCWGG 2 cut(s) 110, 318
PspN4I GGNNCC 2 cut(s) 211, 325
RsaI GTAC 2 cut(s) 203, 357
RsaNI GTAC 2 cut(s) 202, 356
RseI CAYNNNNRTG 1 cut(s) 342
SacII CCGCGG 1 cut(s) 488
SatI GCNGC 3 cut(s) 240, 530, 603
Sau3AI GATC 4 cut(s) 49, 114, 129, 379
ScrFI CCNGG 5 cut(s) 112, 320, 436, 437, 502
SetI ASST 7 cut(s) 270, 279, 466, 519, 549, 588, 701
SfoI GGCGCC 2 cut(s) 211, 325
Sfr303I CCGCGG 1 cut(s) 488
SgrBI CCGCGG 1 cut(s) 488
SmaI CCCGGG 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 3 cut(s) 98, 446, 491
SspDI GGCGCC 2 cut(s) 209, 323
StyD4I CCNGG 5 cut(s) 110, 318, 434, 435, 500
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 2 cut(s) 270, 519
TaqI TCGA 3 cut(s) 174, 273, 365
TaqII GACCGA 2 cut(s) 130, 442
TasI AATT 3 cut(s) 98, 446, 491
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 605
TfiI GAWTC 7 cut(s) 147, 315, 403, 430, 475, 497, 665
TseI GCWGC 2 cut(s) 239, 529
TspMI CCCGGG 1 cut(s) 435
XmaI CCCGGG 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 760
XmnI GAANNNNTTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.