Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

11273573 .. 11276636

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTTTAGTTCTACAACTCTGCATCATCTTCCTCGTCCGAATCTTCTTCTTCCCAGCTCTCGTGTCTGCAGGAAAGTTATTTCGAGAAGAATGAGTACGAATCCTGCAATTGAACCAAAAGTTCGCAAATTTGAATCTGTTGAAGGAGTTGATATTGGTTCAAGAAATAAATCCGATGGTATCAGATTCCGTCTTGTTTCATATAACATATTAGCTCAGGTTTATGTGAAGAGTGCACTTCTCCCACACTCTCCACCTGCCTGTCTCAAATGGAAAGCTCGTTCACATGCAATTCTCAGCGTTCTCAAAAATCTCCAGGCTGATTTCTTTTGTCTGCAGGAAGTAGATGAGTACGATAGCTTTTACAGAAATAACATGGACTCTCTGGGATATTCTGGGATTTATATTCAGAGAACCGGCCAGAGGAAGCGTGATGGTTGTGCAATCTTCTACAAGCCAAGCTGTGCAGAGTTAGTCACAAAGGAACGGATCGAATATAATGATCTTGTGGACTCAATAAAAGCAGATAGTGTTTCCTGCAGCGAACAGAAGATTGAGACATCCAACGAAGGAAAAGATTCTCGAAAAGACAGTCGTGACCTTAATGATCCACTAGTGAGACTAAAACGTGATTGCGTTGGAATAATGGCTGCTTTTAGGATCAACAAGCCGTTTCAGCATATCGTTATCGTGGCAAACACACATCTTTACTGGGACCCTGAATTGGCTGATGTCAAGCTTGCTCAAGCCAAGTATCTACTGTCACGACTAGCTCAGTTCAAAACACTAATATCAGATGAATTTGAGTGCACACCTTCATTGCTACTAGCTGGCGACTTCAATTCAATTCCTGGGGATATGGTTTATAGTTACCTAGTATCGGGTAATGCTAAACCCACAGAGACCATAGAAGAAGAAGAAGCTCCAGTTCCTCTGTCTAGTGTCTATGAAGTCACAAGAGGAGAGCCTAAGTTCACAAATTGCACTCCTGGCTTCACAAACACACTTGACTACATCTTCATCTCTCCTTCAGACTTCATTAAACCTGTGAGTATCCTTCAACTACCTGAGCCGGATTCTCCAGATGTTGTCGGTTTCTTACCGAATCATCATCACCCGAGTGATCATTTACCTATAGGAGCTGAGTTTGAGATTCGTCGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

388

Amino Acids

43.85

Weight (kDa)

6.39

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	37 - 346	9.3e-16	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AclWI	GGATC	3 cut(s)	497, 602, 668
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	2 cut(s)	128, 800
AcuI	CTGAAG	1 cut(s)	1014
AfaI	GTAC	2 cut(s)	97, 353
AfiI	CCNNNNNNNGG	3 cut(s)	423, 724, 880
AgsI	TTSAA	8 cut(s)	113, 134, 143, 162, 781, 841, 846, 1061
AhlI	ACTAGT	1 cut(s)	613
AjnI	CCWGG	3 cut(s)	315, 850, 988
AleI	CACNNNNGTG	1 cut(s)	1119
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
Alw21I	GWGCWC	2 cut(s)	238, 812
Alw26I	GTCTC	4 cut(s)	269, 551, 613, 896
Alw44I	GTGCAC	2 cut(s)	234, 808
AlwI	GGATC	3 cut(s)	497, 602, 668
Ama87I	CYCGRG	1 cut(s)	1117
AoxI	GGCC	1 cut(s)	418
ApaLI	GTGCAC	2 cut(s)	234, 808
ApeKI	GCWGC	2 cut(s)	540, 650
ApoI	RAATTY	2 cut(s)	128, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	577, 609
Asp700I	GAANNNNTTC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	1 cut(s)	1106
AvaI	CYCGRG	1 cut(s)	1117
AvaII	GGWCC	1 cut(s)	715
BaeGI	GKGCMC	2 cut(s)	238, 812
BarI	GAAGNNNNNNTAC	2 cut(s)	79, 111
BauI	CACGAG	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	238, 812
BbvI	GCAGC	2 cut(s)	552, 637
BccI	CCATC	2 cut(s)	170, 428
BceAI	ACGGC	1 cut(s)	655
BciT130I	CCWGG	3 cut(s)	317, 852, 990
BciVI	GTATCC	1 cut(s)	1064
BclI	TGATCA	1 cut(s)	1123
BcoDI	GTCTC	4 cut(s)	269, 551, 613, 896
BcuI	ACTAGT	1 cut(s)	613
BfaI	CTAG	5 cut(s)	614, 770, 827, 875, 939
BfmI	CTRYAG	4 cut(s)	67, 335, 538, 1134
BfuAI	ACCTGC	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	1064
BisI	GCNGC	2 cut(s)	541, 651
BlsI	GCNGC	2 cut(s)	542, 652
Bme1390I	CCNGG	3 cut(s)	317, 852, 990
Bme18I	GGWCC	1 cut(s)	715
BmeT110I	CYCGRG	1 cut(s)	1117
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	2 cut(s)	716, 717
BmrFI	CCNGG	3 cut(s)	317, 852, 990
BmrI	ACTGGG	1 cut(s)	721
BmsI	GCATC	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	721
BpmI	CTGGAG	3 cut(s)	299, 909, 1065
Bpu10I	CCTNAGC	2 cut(s)	216, 1068
BpuEI	CTTGAG	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	896
BsaJI	CCNNGG	1 cut(s)	851
Bsc4I	CCNNNNNNNGG	3 cut(s)	423, 724, 880
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	2 cut(s)	716, 926
Bse3DI	GCAATG	1 cut(s)	818
BseBI	CCWGG	3 cut(s)	317, 852, 990
BseDI	CCNNGG	1 cut(s)	851
BseGI	GGATG	1 cut(s)	560
BseLI	CCNNNNNNNGG	3 cut(s)	423, 724, 880
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	5 cut(s)	230, 310, 788, 1059, 1134
BseNI	ACTGG	2 cut(s)	716, 926
BseRI	GAGGAG	1 cut(s)	975
BseSI	GKGCMC	2 cut(s)	238, 812
BseXI	GCAGC	2 cut(s)	552, 637
BseYI	CCCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	420
BsiHKAI	GWGCWC	2 cut(s)	238, 812
BsiHKCI	CYCGRG	1 cut(s)	1117
BsiSI	CCGG	2 cut(s)	417, 1073
BslFI	GGGAC	1 cut(s)	728
BslI	CCNNNNNNNGG	3 cut(s)	423, 724, 880
BsmAI	GTCTC	4 cut(s)	269, 551, 613, 896
BsmFI	GGGAC	1 cut(s)	728
BsnI	GGCC	1 cut(s)	420
Bso31I	GGTCTC	1 cut(s)	896
BsoBI	CYCGRG	1 cut(s)	1117
Bsp1286I	GDGCHC	2 cut(s)	238, 812
Bsp143I	GATC	5 cut(s)	489, 502, 607, 660, 1123
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	5 cut(s)	229, 309, 787, 1060, 1135
BspLI	GGNNCC	2 cut(s)	716, 717
BspMAI	CTGCAG	3 cut(s)	71, 339, 542
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	3 cut(s)	497, 602, 668
BspTNI	GGTCTC	1 cut(s)	896
BsrDI	GCAATG	1 cut(s)	818
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	716, 926
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	851
BssMI	GATC	5 cut(s)	489, 502, 607, 660, 1123
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	3 cut(s)	317, 852, 990
Bst4CI	ACNGT	2 cut(s)	593, 762
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	741, 832
BstDEI	CTNAG	6 cut(s)	216, 296, 774, 969, 1068, 1143
BstF5I	GGATG	1 cut(s)	560
BstKTI	GATC	5 cut(s)	492, 505, 610, 663, 1126
BstMAI	GTCTC	4 cut(s)	269, 551, 613, 896
BstMBI	GATC	5 cut(s)	489, 502, 607, 660, 1123
BstMWI	GCNNNNNNNGC	2 cut(s)	676, 990
BstNI	CCWGG	3 cut(s)	317, 852, 990
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	315, 850, 988
BstSFI	CTRYAG	4 cut(s)	67, 335, 538, 1134
BstSLI	GKGCMC	2 cut(s)	238, 812
BstV1I	GCAGC	2 cut(s)	552, 637
BsuI	GTATCC	1 cut(s)	1064
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	560
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	741, 832
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	715
Csp6I	GTAC	2 cut(s)	96, 352
CviAII	CATG	2 cut(s)	287, 376
CviQI	GTAC	2 cut(s)	96, 352
DdeI	CTNAG	6 cut(s)	216, 296, 774, 969, 1068, 1143
DpnI	GATC	5 cut(s)	491, 504, 609, 662, 1125
DpnII	GATC	5 cut(s)	489, 502, 607, 660, 1123
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	896
Eco47I	GGWCC	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	1014
Eco88I	CYCGRG	1 cut(s)	1117
EcoO109I	RGGNCCY	1 cut(s)	715
EcoRII	CCWGG	3 cut(s)	315, 850, 988
FaeI	CATG	2 cut(s)	290, 379
FaqI	GGGAC	1 cut(s)	728
FatI	CATG	2 cut(s)	286, 375
FbaI	TGATCA	1 cut(s)	1123
Fnu4HI	GCNGC	2 cut(s)	541, 651
FokI	GGATG	1 cut(s)	547
Fsp4HI	GCNGC	2 cut(s)	541, 651
FspBI	CTAG	5 cut(s)	614, 770, 827, 875, 939
GluI	GCNGC	2 cut(s)	541, 651
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	3 cut(s)	299, 909, 1065
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	2 cut(s)	417, 1073
Hin1II	CATG	2 cut(s)	290, 379
HindIII	AAGCTT	1 cut(s)	737
HpaII	CCGG	2 cut(s)	417, 1073
HphI	GGTGA	1 cut(s)	1106
Hpy166II	GTNNAC	5 cut(s)	236, 284, 511, 810, 975
Hpy188I	TCNGA	6 cut(s)	39, 175, 185, 411, 796, 1033
Hpy188III	TCNNGA	7 cut(s)	84, 162, 582, 596, 765, 1082, 1160
Hpy8I	GTNNAC	5 cut(s)	236, 284, 511, 810, 975
Hpy99I	CGWCG	1 cut(s)	1161
HpyAV	CCTTC	5 cut(s)	137, 563, 825, 1038, 1067
HpyCH4III	ACNGT	2 cut(s)	593, 762
HpyCH4IV	ACGT	1 cut(s)	628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	676, 990
HpyF3I	CTNAG	6 cut(s)	216, 296, 774, 969, 1068, 1143
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	2 cut(s)	290, 379
KflI	GGGWCCC	1 cut(s)	715
Ksp22I	TGATCA	1 cut(s)	1123
Kzo9I	GATC	5 cut(s)	489, 502, 607, 660, 1123
LmnI	GCTCC	2 cut(s)	928, 1139
Lsp1109I	GCAGC	2 cut(s)	552, 637
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	5 cut(s)	614, 770, 827, 875, 939
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	5 cut(s)	475, 596, 762, 869, 952
MalI	GATC	5 cut(s)	491, 504, 609, 662, 1125
MboI	GATC	5 cut(s)	489, 502, 607, 660, 1123
MfeI	CAATTG	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	238, 812
MluCI	AATT	8 cut(s)	108, 128, 291, 722, 800, 841, 846, 979
MlyI	GAGTC	2 cut(s)	374, 506
MmeI	TCCRAC	2 cut(s)	588, 619
MnlI	CCTC	4 cut(s)	42, 417, 942, 953
MroXI	GAANNNNTTC	1 cut(s)	577
MseI	TTAA	2 cut(s)	603, 1041
MslI	CAYNNNNRTG	1 cut(s)	1119
MspI	CCGG	2 cut(s)	417, 1073
MspR9I	CCNGG	3 cut(s)	317, 852, 990
MunI	CAATTG	1 cut(s)	108
MvaI	CCWGG	3 cut(s)	317, 852, 990
MwoI	GCNNNNNNNGC	2 cut(s)	676, 990
NdeII	GATC	5 cut(s)	489, 502, 607, 660, 1123
NlaIII	CATG	2 cut(s)	290, 379
NlaIV	GGNNCC	2 cut(s)	716, 717
NmuCI	GTSAC	4 cut(s)	475, 596, 762, 952
NspI	RCATGY	1 cut(s)	290
OliI	CACNNNNGTG	1 cut(s)	1119
PaqCI	CACCTGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	577
PfeI	GAWTC	8 cut(s)	40, 100, 134, 186, 578, 1076, 1105, 1153
PkrI	GCNGC	2 cut(s)	542, 652
PleI	GAGTC	2 cut(s)	374, 506
PpsI	GAGTC	2 cut(s)	374, 506
PpuMI	RGGWCCY	1 cut(s)	715
Psp5II	RGGWCCY	1 cut(s)	715
Psp6I	CCWGG	3 cut(s)	315, 850, 988
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	3 cut(s)	315, 850, 988
PspN4I	GGNNCC	2 cut(s)	716, 717
PspPI	GGNCC	1 cut(s)	715
PspPPI	RGGWCCY	1 cut(s)	715
PstI	CTGCAG	3 cut(s)	71, 339, 542
RsaI	GTAC	2 cut(s)	97, 353
RsaNI	GTAC	2 cut(s)	96, 352
RseI	CAYNNNNRTG	1 cut(s)	1119
SaqAI	TTAA	2 cut(s)	603, 1041
SatI	GCNGC	2 cut(s)	541, 651
Sau3AI	GATC	5 cut(s)	489, 502, 607, 660, 1123
Sau96I	GGNCC	1 cut(s)	715
SchI	GAGTC	2 cut(s)	374, 506
ScrFI	CCNGG	3 cut(s)	317, 852, 990
SduI	GDGCHC	2 cut(s)	238, 812
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	4 cut(s)	67, 335, 538, 1134
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	1 cut(s)	1119
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
SpeI	ACTAGT	1 cut(s)	613
Sse9I	AATT	8 cut(s)	108, 128, 291, 722, 800, 841, 846, 979
SspMI	CTAG	5 cut(s)	614, 770, 827, 875, 939
StyD4I	CCNGG	3 cut(s)	315, 850, 988
TaaI	ACNGT	2 cut(s)	593, 762
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	3 cut(s)	83, 492, 583
TasI	AATT	8 cut(s)	108, 128, 291, 722, 800, 841, 846, 979
TfiI	GAWTC	8 cut(s)	40, 100, 134, 186, 578, 1076, 1105, 1153
Tru1I	TTAA	2 cut(s)	603, 1041
Tru9I	TTAA	2 cut(s)	603, 1041
TseFI	GTSAC	4 cut(s)	475, 596, 762, 952
TseI	GCWGC	2 cut(s)	540, 650
Tsp45I	GTSAC	4 cut(s)	475, 596, 762, 952
TspDTI	ATGAA	6 cut(s)	189, 807, 813, 963, 1009, 1027
TspGWI	ACGGA	2 cut(s)	179, 502
VneI	GTGCAC	2 cut(s)	234, 808
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	2 cut(s)	128, 800
XceI	RCATGY	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	577
XspI	CTAG	5 cut(s)	614, 770, 827, 875, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.