Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Forward (+)

38469294 .. 38474685

Gene Structure 5392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002713

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCTGCGGAGGACGACTATTCCTGTGCTTCCCCGCCTACCCATTCCCTTCTTCTCCTTAACAAGGTCTGTTCCGACCAAAATGAGTTCAACCCAATCACCAGTCAAACTCCCAAGATTTGTTTCTGTTGAAGAGAGTGGTATCTCTTCTCTAAGCAAACCTGATGGTATCAGGTTTAGTCTTGTCTCGTATAACATTTTGGCTCAGATTTGTACTTTCTGTAATTCAGGGTTTTATATCTTAGTTTTATCTGGTTATTTTGTATCTAGAATGATAAATCCCATATTTGTTAATTATGCTTACCATAGGTGGAAAGCCCGCTCGCAGGCAACTTTGAGTGTTCTCAAGAACCTTGGAGTCGACTTTCTCTGCCTACAGGAAGTTGATGAGTACGAGAGCTTTTACAAAGGAAATATGGAGAGCAGTGGTTATTCCAGTACCTACATTCAGAGAAGTGGGCAAAAGCGTGACGGATGTGGAATTTTTTATAAGAATAACATGGCAGAGTTGGTGTTACAGGATATTATAGATTACAATGATCTCGTAAACTCAACTCAAAAGGGAAACATTCTGGATGATGATAAACAATATGACAAGGATGCTATTGCAAACAAAGATCCTGGATCCAAAAATGGTTCAAAATCAAAAAGCACTCAGGATCGTGGAGATCCTAATGATCCCTGTGTCAGACTAAAACGTGATTGTGTAGGACTTATAGCAGCATTCAAGCTTAAAAATCCTTCACAAAATGTTGTTATTGTGGCAAACACACACATTTACTGGGATCCAGAGTTGGCAGACGTTAAGCTTGCACAAGCTAAATATCTACTGTCACGCTTAGCTCGATTTAAAAAGTTGGTATCAGATAAGTTTGAGTGCACCCCATCATTAATTGTAGCTGGCGACTTCAATTCAACCCCCGGCGATAAGGTTTACCAGTATCTTATTTCCGGCAACTCTTCATCTGCACCAACGCTTGATGTTGTTGAAGATCTGCCTATTCCTTTGTGCAGTGTCTACGGTTCTACAAGGGGTGAACCACCTTTTACGAATTACACCCCTGGCTTCACAGGCACACTGGATTATATATTCTTTTCCCCTAGTGACAACATACAACCAGTCAGTTTCCTTGAGCTTCCAGAACCAGAATCCTCTGACATTGATGGAGGATTACCAAACTTTAATCACCCAAGCGACCATTTACCAATTGGTGCCGAGTTTGTGATATCCCGGGAATATATTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

416

Amino Acids

46.24

Weight (kDa)

5.91

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	63 - 400	1.9e-18	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	1211
AccBSI	CCGCTC	1 cut(s)	321
AccI	GTMKAC	2 cut(s)	360, 1017
AciI	CCGC	3 cut(s)	7, 34, 319
AclWI	GGATC	8 cut(s)	611, 618, 631, 662, 666, 671, 779, 792
AcsI	RAATTY	1 cut(s)	480
AfaI	GTAC	3 cut(s)	214, 392, 439
AfiI	CCNNNNNNNGG	2 cut(s)	63, 325
AgsI	TTSAA	7 cut(s)	90, 131, 639, 727, 910, 915, 989
AjnI	CCWGG	2 cut(s)	619, 1060
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	7 cut(s)	399, 730, 808, 818, 842, 899, 1135
AluI	AGCT	7 cut(s)	399, 730, 808, 818, 842, 899, 1135
Alw21I	GWGCWC	1 cut(s)	881
Alw26I	GTCTC	1 cut(s)	190
Alw44I	GTGCAC	1 cut(s)	877
AlwI	GGATC	8 cut(s)	611, 618, 631, 662, 666, 671, 779, 792
Ama87I	CYCGRG	1 cut(s)	1230
ApaLI	GTGCAC	1 cut(s)	877
ApeKI	GCWGC	2 cut(s)	4, 719
ApoI	RAATTY	1 cut(s)	480
AseI	ATTAAT	1 cut(s)	890
Asp700I	GAANNNNTTC	1 cut(s)	1239
AsuC2I	CCSGG	3 cut(s)	921, 1231, 1232
AsuHPI	GGTGA	3 cut(s)	90, 1046, 1178
AvaI	CYCGRG	1 cut(s)	1230
BaeGI	GKGCMC	1 cut(s)	881
BamHI	GGATCC	2 cut(s)	623, 784
BanI	GGYRCC	1 cut(s)	1211
Bbv12I	GWGCWC	1 cut(s)	881
BbvI	GCAGC	1 cut(s)	731
BccI	CCATC	3 cut(s)	158, 892, 1157
BciT130I	CCWGG	2 cut(s)	621, 1062
BcnI	CCSGG	3 cut(s)	921, 1231, 1232
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	267, 1101
BfmI	CTRYAG	1 cut(s)	374
BglII	AGATCT	1 cut(s)	991
BisI	GCNGC	2 cut(s)	5, 720
BlpI	GCTNAGC	1 cut(s)	838
BlsI	GCNGC	2 cut(s)	6, 721
Bme1390I	CCNGG	5 cut(s)	621, 921, 1062, 1231, 1232
BmeT110I	CYCGRG	1 cut(s)	1230
BmiI	GGNNCC	3 cut(s)	625, 786, 1213
BmrFI	CCNGG	5 cut(s)	621, 921, 1062, 1231, 1232
BmrI	ACTGGG	1 cut(s)	790
BmsI	GCATC	1 cut(s)	589
BmuI	ACTGGG	1 cut(s)	790
Bpu1102I	GCTNAGC	1 cut(s)	838
BpuEI	CTTGAG	2 cut(s)	329, 1151
BpuMI	CCSGG	3 cut(s)	921, 1231, 1232
BsaJI	CCNNGG	4 cut(s)	352, 919, 1060, 1230
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 325
Bse1I	ACTGG	6 cut(s)	101, 435, 785, 937, 1083, 1118
BseBI	CCWGG	2 cut(s)	621, 1062
BseDI	CCNNGG	4 cut(s)	352, 919, 1060, 1230
BseGI	GGATG	3 cut(s)	479, 580, 604
BseLI	CCNNNNNNNGG	2 cut(s)	63, 325
BseMII	CTCAG	2 cut(s)	218, 668
BseNI	ACTGG	6 cut(s)	101, 435, 785, 937, 1083, 1118
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	1 cut(s)	731
BsgI	GTGCAG	2 cut(s)	951, 1030
BshNI	GGYRCC	1 cut(s)	1211
BsiHKAI	GWGCWC	1 cut(s)	881
BsiHKCI	CYCGRG	1 cut(s)	1230
BsiSI	CCGG	3 cut(s)	921, 951, 1231
BslI	CCNNNNNNNGG	2 cut(s)	63, 325
BsmAI	GTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	722
BsoBI	CYCGRG	1 cut(s)	1230
Bsp1286I	GDGCHC	1 cut(s)	881
Bsp143I	GATC	8 cut(s)	538, 616, 623, 658, 667, 676, 784, 991
Bsp1720I	GCTNAGC	1 cut(s)	838
BspACI	CCGC	3 cut(s)	7, 34, 319
BspCNI	CTCAG	2 cut(s)	217, 667
BspLI	GGNNCC	3 cut(s)	625, 786, 1213
BspPI	GGATC	8 cut(s)	611, 618, 631, 662, 666, 671, 779, 792
BspT107I	GGYRCC	1 cut(s)	1211
BsrBI	CCGCTC	1 cut(s)	321
BsrI	ACTGG	6 cut(s)	101, 435, 785, 937, 1083, 1118
BssECI	CCNNGG	4 cut(s)	352, 919, 1060, 1230
BssMI	GATC	8 cut(s)	538, 616, 623, 658, 667, 676, 784, 991
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	2 cut(s)	621, 1062
Bst4CI	ACNGT	2 cut(s)	831, 1022
Bst6I	CTCTTC	3 cut(s)	126, 151, 964
BstC8I	GCNNGC	5 cut(s)	319, 323, 327, 810, 901
BstDEI	CTNAG	5 cut(s)	152, 204, 241, 654, 838
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	479, 580, 604
BstKTI	GATC	8 cut(s)	541, 619, 626, 661, 670, 679, 787, 994
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	8 cut(s)	538, 616, 623, 658, 667, 676, 784, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	1071
BstNI	CCWGG	2 cut(s)	621, 1062
BstSCI	CCNGG	5 cut(s)	619, 919, 1060, 1229, 1230
BstSFI	CTRYAG	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	881
BstV1I	GCAGC	1 cut(s)	731
BstX2I	RGATCY	5 cut(s)	616, 623, 667, 784, 991
BstYI	RGATCY	5 cut(s)	616, 623, 667, 784, 991
BtsCI	GGATG	3 cut(s)	479, 580, 604
BtsI	GCAGTG	2 cut(s)	430, 1018
BtsIMutI	CAGTG	3 cut(s)	430, 1018, 1076
Cac8I	GCNNGC	5 cut(s)	319, 323, 327, 810, 901
Cfr9I	CCCGGG	1 cut(s)	1230
Csp6I	GTAC	3 cut(s)	213, 391, 438
CviAII	CATG	1 cut(s)	499
CviQI	GTAC	3 cut(s)	213, 391, 438
DdeI	CTNAG	5 cut(s)	152, 204, 241, 654, 838
DpnI	GATC	8 cut(s)	540, 618, 625, 660, 669, 678, 786, 993
DpnII	GATC	8 cut(s)	538, 616, 623, 658, 667, 676, 784, 991
DraI	TTTAAA	1 cut(s)	850
Eam1104I	CTCTTC	3 cut(s)	126, 151, 964
EarI	CTCTTC	3 cut(s)	126, 151, 964
Eco130I	CCWWGG	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	1227
Eco88I	CYCGRG	1 cut(s)	1230
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	619, 1060
EcoRV	GATATC	1 cut(s)	1227
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	502
FatI	CATG	1 cut(s)	498
FauI	CCCGC	2 cut(s)	41, 326
FblI	GTMKAC	2 cut(s)	360, 1017
Fnu4HI	GCNGC	2 cut(s)	5, 720
FokI	GGATG	3 cut(s)	486, 587, 611
Fsp4HI	GCNGC	2 cut(s)	5, 720
FspBI	CTAG	2 cut(s)	267, 1101
GluI	GCNGC	2 cut(s)	5, 720
HapII	CCGG	3 cut(s)	921, 951, 1231
Hin1II	CATG	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	2 cut(s)	728, 806
HinfI	GANTC	2 cut(s)	357, 1148
HpaII	CCGG	3 cut(s)	921, 951, 1231
HphI	GGTGA	3 cut(s)	90, 1046, 1178
Hpy166II	GTNNAC	6 cut(s)	361, 547, 879, 934, 1018, 1037
Hpy188I	TCNGA	6 cut(s)	75, 207, 450, 689, 865, 1156
Hpy188III	TCNNGA	6 cut(s)	267, 346, 572, 656, 788, 1139
Hpy8I	GTNNAC	6 cut(s)	361, 547, 879, 934, 1018, 1037
HpyAV	CCTTC	2 cut(s)	58, 750
HpyCH4III	ACNGT	2 cut(s)	831, 1022
HpyCH4IV	ACGT	2 cut(s)	697, 801
HpyCH4V	TGCA	5 cut(s)	608, 812, 879, 968, 1011
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1071
HpyF3I	CTNAG	5 cut(s)	152, 204, 241, 654, 838
HpySE526I	ACGT	2 cut(s)	697, 801
Hsp92II	CATG	1 cut(s)	502
Kzo9I	GATC	8 cut(s)	538, 616, 623, 658, 667, 676, 784, 991
Lsp1109I	GCAGC	1 cut(s)	731
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	2 cut(s)	267, 1101
MaeII	ACGT	2 cut(s)	697, 801
MaeIII	GTNAC	4 cut(s)	467, 513, 831, 1103
MalI	GATC	8 cut(s)	540, 618, 625, 660, 669, 678, 786, 993
MbiI	CCGCTC	1 cut(s)	321
MboI	GATC	8 cut(s)	538, 616, 623, 658, 667, 676, 784, 991
MboII	GAAGA	5 cut(s)	43, 138, 143, 951, 1001
MfeI	CAATTG	1 cut(s)	1206
MflI	RGATCY	5 cut(s)	616, 623, 667, 784, 991
MhlI	GDGCHC	1 cut(s)	881
MluCI	AATT	7 cut(s)	223, 292, 480, 891, 910, 1051, 1206
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	3, 1160, 1162
MroXI	GAANNNNTTC	1 cut(s)	1239
MseI	TTAA	8 cut(s)	59, 291, 732, 804, 849, 890, 1182, 1246
MspI	CCGG	3 cut(s)	921, 951, 1231
MspR9I	CCNGG	5 cut(s)	621, 921, 1062, 1231, 1232
MunI	CAATTG	1 cut(s)	1206
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	2 cut(s)	621, 1062
MwoI	GCNNNNNNNGC	1 cut(s)	1071
NciI	CCSGG	3 cut(s)	921, 1231, 1232
NdeII	GATC	8 cut(s)	538, 616, 623, 658, 667, 676, 784, 991
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	3 cut(s)	625, 786, 1213
NmeAIII	GCCGAG	1 cut(s)	1240
NmuCI	GTSAC	3 cut(s)	467, 831, 1103
PcsI	WCGNNNNNNNCGW	1 cut(s)	841
PctI	GAATGC	1 cut(s)	722
PdmI	GAANNNNTTC	1 cut(s)	1239
PfeI	GAWTC	1 cut(s)	1148
PfoI	TCCNGGA	1 cut(s)	619
PkrI	GCNGC	2 cut(s)	6, 721
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PshBI	ATTAAT	1 cut(s)	890
PsiI	TTATAA	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	619, 1060
PspGI	CCWGG	2 cut(s)	619, 1060
PspN4I	GGNNCC	3 cut(s)	625, 786, 1213
PsuI	RGATCY	5 cut(s)	616, 623, 667, 784, 991
RsaI	GTAC	3 cut(s)	214, 392, 439
RsaNI	GTAC	3 cut(s)	213, 391, 438
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	8 cut(s)	59, 291, 732, 804, 849, 890, 1182, 1246
SatI	GCNGC	2 cut(s)	5, 720
Sau3AI	GATC	8 cut(s)	538, 616, 623, 658, 667, 676, 784, 991
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	5 cut(s)	621, 921, 1062, 1231, 1232
SduI	GDGCHC	1 cut(s)	881
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	374
SmaI	CCCGGG	1 cut(s)	1232
SmlI	CTYRAG	2 cut(s)	344, 1130
SmoI	CTYRAG	2 cut(s)	344, 1130
Sse9I	AATT	7 cut(s)	223, 292, 480, 891, 910, 1051, 1206
SsiI	CCGC	3 cut(s)	7, 34, 319
SspMI	CTAG	2 cut(s)	267, 1101
StyD4I	CCNGG	5 cut(s)	619, 919, 1060, 1229, 1230
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	2 cut(s)	831, 1022
TaiI	ACGT	2 cut(s)	700, 804
TaqI	TCGA	2 cut(s)	360, 844
TasI	AATT	7 cut(s)	223, 292, 480, 891, 910, 1051, 1206
TatI	WGTACW	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	1148
Tru1I	TTAA	8 cut(s)	59, 291, 732, 804, 849, 890, 1182, 1246
Tru9I	TTAA	8 cut(s)	59, 291, 732, 804, 849, 890, 1182, 1246
TscAI	CASTG	3 cut(s)	430, 1018, 1083
TseFI	GTSAC	3 cut(s)	467, 831, 1103
TseI	GCWGC	2 cut(s)	4, 719
Tsp45I	GTSAC	3 cut(s)	467, 831, 1103
TspDTI	ATGAA	1 cut(s)	951
TspGWI	ACGGA	1 cut(s)	486
TspMI	CCCGGG	1 cut(s)	1230
TspRI	CASTG	3 cut(s)	430, 1018, 1083
VneI	GTGCAC	1 cut(s)	877
VspI	ATTAAT	1 cut(s)	890
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	480
XbaI	TCTAGA	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1205
XmaI	CCCGGG	1 cut(s)	1230
XmiI	GTMKAC	2 cut(s)	360, 1017
XmnI	GAANNNNTTC	1 cut(s)	1239
XspI	CTAG	2 cut(s)	267, 1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.