Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

32214737 .. 32220558

Gene Structure 5822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG288300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCTGCGGAGGACGACTATTCCTGTGCTTCCCCGCCTACCCATTCCCTTCTTCTCCTTAACAAGGTCTGTTCCGACCAAAATGAGCTCAACCCAATCACCAATCAGACTCCCAAGATTTGTTTCTGTTCAAGAGAGTGGCATCTCTTCTCTAACCAAACCTGATGGTATCAGGTTTAGTCTTGTCTCGTATAACATTTTGGCTCAGGCGTATGTGAAGAGCTCCTTGTTTCCCCACTCTCCATCTTCTTGTCTCAAGTGGAAAGCCCGCTCACAGGCAATTTTGAGTGTTCTCAAGAACCTTGGAGTCGACTTTCTCTGCCTACAGGAAGTTGATGAGTACGAGAGCTTTTACAAAGGAAATATGGAGAGCAGTGGTTATTCCAGTACCTACATTCAGAGAAGTGGGCAAAAGCGTGACGGATGTGGAATTTTTTATAAGCATAACATGGCAGAGTTGGTGTTAGAGGATATTATAGATTACAATGATCTTGTAAACTCAACTCAAGAGGGAAACGTTCTGGATGATGATAAACAATATGACAAGGACGCTATTGCAAGCAAAGATCCTGGATCCAAAAATGGTTCAAAATCAAAAAGCACTCAGGATCGTGGAGATCCTAATGATCCCCGTGTCAGACTAAAACGTGATTGTGTAGGACTTATAGCAGCATTCAAGCTTAAAAATCCTTCACAAAATGTTGTTATTGTGGCAAACACACACATTTACTGGGATCCAGAGTGGGCAGACGTTAAACTTGCACAAGCTAAATATCTACTGTCACGCTTAGCTCGATTTAAAAAGTTGGTATCAGATAAGTTTGAGTGCACCCCATCATTAATTGTAGCTGGCGACTTCAATTCAACCCCAGGCGATAAGGTTAATGTCCTTAAAGTTCTTAATCTGCATAGTTTCCTCTCTCTGTTGCCTATGGTATTATTTTCTTTGGTGATTGTGCATGCAGCTGTTCTGGTAGTTAAAATTTCATTGCTGAACCATAGTGTTACCCAAATTTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

340

Amino Acids

37.9

Weight (kDa)

9.26

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	63 - 292	4e-12	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AccB7I	CCANNNNNTGG	1 cut(s)	1015
AccBSI	CCGCTC	1 cut(s)	270
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	3 cut(s)	7, 34, 268
AclI	AACGTT	1 cut(s)	516
AclWI	GGATC	8 cut(s)	560, 567, 580, 611, 615, 620, 728, 741
AcsI	RAATTY	3 cut(s)	429, 981, 1011
AfaI	GTAC	2 cut(s)	341, 388
AfiI	CCNNNNNNNGG	3 cut(s)	63, 274, 1015
AgsI	TTSAA	5 cut(s)	131, 588, 676, 859, 864
AjnI	CCWGG	2 cut(s)	568, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	8 cut(s)	87, 222, 348, 679, 767, 791, 848, 965
AluI	AGCT	8 cut(s)	87, 222, 348, 679, 767, 791, 848, 965
Alw21I	GWGCWC	3 cut(s)	89, 224, 830
Alw26I	GTCTC	2 cut(s)	190, 257
Alw44I	GTGCAC	1 cut(s)	826
AlwI	GGATC	8 cut(s)	560, 567, 580, 611, 615, 620, 728, 741
ApaLI	GTGCAC	1 cut(s)	826
ApeKI	GCWGC	3 cut(s)	4, 668, 962
ApoI	RAATTY	3 cut(s)	429, 981, 1011
AseI	ATTAAT	1 cut(s)	839
AsuHPI	GGTGA	2 cut(s)	90, 961
BaeGI	GKGCMC	1 cut(s)	830
BamHI	GGATCC	2 cut(s)	572, 733
BanII	GRGCYC	2 cut(s)	89, 224
Bbv12I	GWGCWC	3 cut(s)	89, 224, 830
BbvI	GCAGC	2 cut(s)	680, 974
BccI	CCATC	3 cut(s)	158, 250, 841
BciT130I	CCWGG	2 cut(s)	570, 870
BcoDI	GTCTC	2 cut(s)	190, 257
BfmI	CTRYAG	1 cut(s)	323
BisI	GCNGC	3 cut(s)	5, 669, 963
BlpI	GCTNAGC	1 cut(s)	787
BlsI	GCNGC	3 cut(s)	6, 670, 964
Bme1390I	CCNGG	2 cut(s)	570, 870
BmiI	GGNNCC	2 cut(s)	574, 735
BmrFI	CCNGG	2 cut(s)	570, 870
BmrI	ACTGGG	1 cut(s)	739
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	739
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	787
BpuEI	CTTGAG	3 cut(s)	239, 278, 489
BsaJI	CCNNGG	2 cut(s)	301, 868
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 274, 1015
Bse1I	ACTGG	2 cut(s)	384, 734
Bse3DI	GCAATG	1 cut(s)	986
BseBI	CCWGG	2 cut(s)	570, 870
BseDI	CCNNGG	2 cut(s)	301, 868
BseGI	GGATG	2 cut(s)	428, 529
BseLI	CCNNNNNNNGG	3 cut(s)	63, 274, 1015
BseMI	GCAATG	1 cut(s)	986
BseMII	CTCAG	2 cut(s)	218, 617
BseNI	ACTGG	2 cut(s)	384, 734
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	2 cut(s)	680, 974
BsiHKAI	GWGCWC	3 cut(s)	89, 224, 830
BslI	CCNNNNNNNGG	3 cut(s)	63, 274, 1015
BsmAI	GTCTC	2 cut(s)	190, 257
BsmI	GAATGC	1 cut(s)	671
Bsp1286I	GDGCHC	3 cut(s)	89, 224, 830
Bsp143I	GATC	7 cut(s)	487, 565, 572, 607, 616, 625, 733
Bsp1720I	GCTNAGC	1 cut(s)	787
BspACI	CCGC	3 cut(s)	7, 34, 268
BspCNI	CTCAG	2 cut(s)	217, 616
BspLI	GGNNCC	2 cut(s)	574, 735
BspPI	GGATC	8 cut(s)	560, 567, 580, 611, 615, 620, 728, 741
BspQI	GCTCTTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	986
BsrI	ACTGG	2 cut(s)	384, 734
BssECI	CCNNGG	2 cut(s)	301, 868
BssMI	GATC	7 cut(s)	487, 565, 572, 607, 616, 625, 733
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	570, 870
Bst4CI	ACNGT	1 cut(s)	780
Bst6I	CTCTTC	2 cut(s)	151, 212
BstC8I	GCNNGC	4 cut(s)	268, 559, 850, 960
BstDEI	CTNAG	3 cut(s)	204, 603, 787
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	428, 529
BstKTI	GATC	7 cut(s)	490, 568, 575, 610, 619, 628, 736
BstMAI	GTCTC	2 cut(s)	190, 257
BstMBI	GATC	7 cut(s)	487, 565, 572, 607, 616, 625, 733
BstNI	CCWGG	2 cut(s)	570, 870
BstNSI	RCATGY	1 cut(s)	962
BstSCI	CCNGG	2 cut(s)	568, 868
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	830
BstV1I	GCAGC	2 cut(s)	680, 974
BstX2I	RGATCY	4 cut(s)	565, 572, 616, 733
BstYI	RGATCY	4 cut(s)	565, 572, 616, 733
BtsCI	GGATG	2 cut(s)	428, 529
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	4 cut(s)	268, 559, 850, 960
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	2 cut(s)	340, 387
CviAII	CATG	3 cut(s)	448, 959, 1020
CviQI	GTAC	2 cut(s)	340, 387
DdeI	CTNAG	3 cut(s)	204, 603, 787
DpnI	GATC	7 cut(s)	489, 567, 574, 609, 618, 627, 735
DpnII	GATC	7 cut(s)	487, 565, 572, 607, 616, 625, 733
DraI	TTTAAA	1 cut(s)	799
Eam1104I	CTCTTC	2 cut(s)	151, 212
EarI	CTCTTC	2 cut(s)	151, 212
Ecl136II	GAGCTC	2 cut(s)	87, 222
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	2 cut(s)	89, 224
Eco53kI	GAGCTC	2 cut(s)	87, 222
EcoICRI	GAGCTC	2 cut(s)	87, 222
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	568, 868
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	2 cut(s)	89, 224
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	3 cut(s)	451, 962, 1023
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	3 cut(s)	447, 958, 1019
FauI	CCCGC	2 cut(s)	41, 275
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	5, 669, 963
FokI	GGATG	2 cut(s)	435, 536
FriOI	GRGCYC	2 cut(s)	89, 224
Fsp4HI	GCNGC	3 cut(s)	5, 669, 963
GluI	GCNGC	3 cut(s)	5, 669, 963
HgaI	GACGC	1 cut(s)	557
Hin1II	CATG	3 cut(s)	451, 962, 1023
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	2 cut(s)	108, 306
HphI	GGTGA	2 cut(s)	90, 961
Hpy166II	GTNNAC	3 cut(s)	310, 496, 828
Hpy188I	TCNGA	5 cut(s)	75, 107, 399, 638, 814
Hpy188III	TCNNGA	6 cut(s)	131, 295, 506, 521, 605, 737
Hpy8I	GTNNAC	3 cut(s)	310, 496, 828
HpyAV	CCTTC	2 cut(s)	58, 699
HpyCH4III	ACNGT	1 cut(s)	780
HpyCH4IV	ACGT	3 cut(s)	516, 646, 750
HpyCH4V	TGCA	6 cut(s)	557, 761, 828, 907, 958, 962
HpyF3I	CTNAG	3 cut(s)	204, 603, 787
HpySE526I	ACGT	3 cut(s)	516, 646, 750
Hsp92II	CATG	3 cut(s)	451, 962, 1023
Kzo9I	GATC	7 cut(s)	487, 565, 572, 607, 616, 625, 733
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	2 cut(s)	680, 974
LweI	GCATC	1 cut(s)	150
MaeII	ACGT	3 cut(s)	516, 646, 750
MaeIII	GTNAC	3 cut(s)	416, 780, 1003
MalI	GATC	7 cut(s)	489, 567, 574, 609, 618, 627, 735
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	7 cut(s)	487, 565, 572, 607, 616, 625, 733
MboII	GAAGA	4 cut(s)	43, 138, 229, 237
MflI	RGATCY	4 cut(s)	565, 572, 616, 733
MhlI	GDGCHC	3 cut(s)	89, 224, 830
MluCI	AATT	6 cut(s)	279, 429, 840, 859, 981, 1011
MlyI	GAGTC	2 cut(s)	102, 315
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	4 cut(s)	3, 460, 502, 926
MseI	TTAA	9 cut(s)	59, 681, 753, 798, 839, 882, 891, 900, 978
MspA1I	CMGCKG	1 cut(s)	965
MspR9I	CCNGG	2 cut(s)	570, 870
Mva1269I	GAATGC	1 cut(s)	671
MvaI	CCWGG	2 cut(s)	570, 870
NdeII	GATC	7 cut(s)	487, 565, 572, 607, 616, 625, 733
NlaIII	CATG	3 cut(s)	451, 962, 1023
NlaIV	GGNNCC	2 cut(s)	574, 735
NmuCI	GTSAC	2 cut(s)	416, 780
NspI	RCATGY	1 cut(s)	962
PaeI	GCATGC	1 cut(s)	962
PciSI	GCTCTTC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	790
PctI	GAATGC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	1015
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	3 cut(s)	6, 670, 964
PleI	GAGTC	2 cut(s)	102, 314
PpsI	GAGTC	2 cut(s)	102, 314
PshBI	ATTAAT	1 cut(s)	839
PsiI	TTATAA	1 cut(s)	438
Psp124BI	GAGCTC	2 cut(s)	89, 224
Psp1406I	AACGTT	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	568, 868
PspGI	CCWGG	2 cut(s)	568, 868
PspN4I	GGNNCC	2 cut(s)	574, 735
PsuI	RGATCY	4 cut(s)	565, 572, 616, 733
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	2 cut(s)	341, 388
RsaNI	GTAC	2 cut(s)	340, 387
SacI	GAGCTC	2 cut(s)	89, 224
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	9 cut(s)	59, 681, 753, 798, 839, 882, 891, 900, 978
SatI	GCNGC	3 cut(s)	5, 669, 963
Sau3AI	GATC	7 cut(s)	487, 565, 572, 607, 616, 625, 733
SchI	GAGTC	2 cut(s)	102, 315
ScrFI	CCNGG	2 cut(s)	570, 870
SduI	GDGCHC	3 cut(s)	89, 224, 830
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	323
SmlI	CTYRAG	3 cut(s)	254, 293, 504
SmoI	CTYRAG	3 cut(s)	254, 293, 504
SphI	GCATGC	1 cut(s)	962
Sse9I	AATT	6 cut(s)	279, 429, 840, 859, 981, 1011
SsiI	CCGC	3 cut(s)	7, 34, 268
SstI	GAGCTC	2 cut(s)	89, 224
StyD4I	CCNGG	2 cut(s)	568, 868
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	780
TaiI	ACGT	3 cut(s)	519, 649, 753
TaqI	TCGA	2 cut(s)	309, 793
TasI	AATT	6 cut(s)	279, 429, 840, 859, 981, 1011
Tru1I	TTAA	9 cut(s)	59, 681, 753, 798, 839, 882, 891, 900, 978
Tru9I	TTAA	9 cut(s)	59, 681, 753, 798, 839, 882, 891, 900, 978
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	416, 780
TseI	GCWGC	3 cut(s)	4, 668, 962
Tsp45I	GTSAC	2 cut(s)	416, 780
TspDTI	ATGAA	1 cut(s)	975
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	379
Van91I	CCANNNNNTGG	1 cut(s)	1015
VneI	GTGCAC	1 cut(s)	826
VspI	ATTAAT	1 cut(s)	839
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	3 cut(s)	429, 981, 1011
XceI	RCATGY	1 cut(s)	962
XmiI	GTMKAC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.