Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

33397542 .. 33403538

Gene Structure 5997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG151100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGTGCCTGTAGTCTTATCGGCGCCAAGTGTTCAGGCTGGTGGCGAGAGTGGTGTTGAGGACGTGGTCGCCGTCGAGCCAGAACGACATGAACAGTGTATCAGGTTTAGTCTTGTGTCGTATAACATTTTGGCTCAGGCGTATGTGAAGAGCTCCTTGTTTCCCCACTCTCCATCTTCTTGTCTCAAGGGGAAAGCCCGTTCGCAGGCAATTTTGAGTGTTCTCAAGAACCTTGGAGTCGACTCTCTGCCTACAGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

87

Amino Acids

9.14

Weight (kDa)

6.71

Isoelectric Point (pI)

65.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 22
AccI	GTMKAC	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	64
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	25
BanI	GGYRCC	2 cut(s)	4, 22
BanII	GRGCYC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	155
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	188
BfmI	CTRYAG	2 cut(s)	9, 252
BfoI	RGCGCY	1 cut(s)	26
BmgBI	CACGTC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	6, 24
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	170, 209
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	149
BshNI	GGYRCC	2 cut(s)	4, 22
BsiHKAI	GWGCWC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	6, 24
BspQI	GCTCTTC	1 cut(s)	143
BspT107I	GGYRCC	2 cut(s)	4, 22
BssECI	CCNNGG	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	188
BstSFI	CTRYAG	2 cut(s)	9, 252
BtrI	CACGTC	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	5 cut(s)	38, 79, 134, 153, 197
CviKI_1	RGCY	5 cut(s)	38, 79, 134, 153, 197
DdeI	CTNAG	1 cut(s)	135
DinI	GGCGCC	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	1 cut(s)	92
FaiI	YATR	3 cut(s)	90, 123, 144
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	240
FriOI	GRGCYC	1 cut(s)	155
GlaI	GCGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	26
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	237, 242
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	23
KasI	GGCGCC	1 cut(s)	22
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	20, 21, 24, 88, 93, 122, 191, 240
MaeII	ACGT	1 cut(s)	63
MboII	GAAGA	2 cut(s)	160, 168
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	1 cut(s)	210
Mly113I	GGCGCC	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	236, 246
MnlI	CCTC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	6, 24
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PflFI	GACNNNGTC	1 cut(s)	65
PleI	GAGTC	2 cut(s)	236, 245
PluTI	GGCGCC	1 cut(s)	26
PpsI	GAGTC	2 cut(s)	236, 245
Psp124BI	GAGCTC	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	6, 24
PsyI	GACNNNGTC	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	155
SalI	GTCGAC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	236, 246
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	4 cut(s)	66, 107, 155, 234
SfcI	CTRYAG	2 cut(s)	9, 252
SfoI	GGCGCC	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	185, 224
SmoI	CTYRAG	2 cut(s)	185, 224
Sse9I	AATT	1 cut(s)	210
SspDI	GGCGCC	1 cut(s)	22
SstI	GAGCTC	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	75, 240
TasI	AATT	1 cut(s)	210
TscAI	CASTG	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	101
Tth111I	GACNNNGTC	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.