Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Forward (+)

37753720 .. 37760088

Gene Structure 6369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGCTGCGGACGACGACTATTCCTGTGCTTCCCCGCCTACCCATTCCCTTCTTCTCCTTAACAAGGTCTGTTCCGACCAAAATGAGTTCAACCCAATCACCAATCAAACTCCCAAGATTTGTTTCTGTTGAAGAGAGTGGCATCTCTTCTCTAAGCAAACCTGATGGTATCAGGTTTAGTCTTGTCTCGTATAACATTTTGGCTCAGGCGTATGTGAAGAGCTCCTTGTTTCCCCACTCTCCATCTTCTTGTCTCAAGTGGAAAGCCCGCTCGCAGGCAATTTTGAGTGTTCTCAAGAACCTTGGAGTCGACTTTCTCTGCCTACAGGAAGTTGATGAGTACGAGAGCTTTTACAAAGGAAATATGGAGAGCAGTGGTTATTCCAGTACCTACATTCAGAGAAGTGGGCAAAAGCGTGACGGATGTGGAATTTTTTATAAGCATAACATGGCAGAGTTGGTGTTAGAGGATATTATAGATTACAATGATCTTGTAAACTCAACTCAAGAGGGAAACGTTCTGGATGATGATAAACAATATGACAAGGACGCTATTGCAAACAAAGATCCTGGATCCAAAAATGGTTCAAAATCAAAAAGCACTCAGGATCGTGGAGATCCTAATGATCCCTGTGTCAGACTAAAACGTGATTGTGTAGGACTTATAGCAGCATTCAAGCTTAAAAATCCTTCACAAAATGTTGTTATTGTGGCAAACACACACATTTACTGGGATCCAGAGTGGGCAGACGTTAAGCTTGCACAAGCTAAATATCTACTGTCACGCTTAGCTCGATTTAAAAAGTTGGTATCAGATAAGTTTGAGTGCACCCCATCATTAATTGTAGCTGGCGACTTCAATTCAACCCCCGGCGATAAGGTTTACCAGTATCTTATTTCCGGCAACTCTTCATCTGCACCAAAGCTTGATGTTGTTGAAGATCTGCCTATTCCTTTGTGCAGTGTCTACGGTTCTACAAGGGGTGAACCACCTTTTACAAATTACACCCCTGGCTTCACAGGCACACTGGATTATATATTCTTTTCCCCTAGTGACAACATACAACCAGTCAGTTTCCTTGAGCTTCCAGAACCAGAATCCTCTGATATTGATGGAGGATTACCAAACTTTAATCACCCAAGCGACCATTTACCAATTGGTGCTGAGTTTGTGATATCCCGGGAATATATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

398

Amino Acids

44.16

Weight (kDa)

5.53

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	63 - 383	1.9e-19	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AccBSI	CCGCTC	1 cut(s)	270
AccI	GTMKAC	2 cut(s)	309, 966
AciI	CCGC	3 cut(s)	7, 34, 268
AclI	AACGTT	1 cut(s)	516
AclWI	GGATC	8 cut(s)	560, 567, 580, 611, 615, 620, 728, 741
AcsI	RAATTY	1 cut(s)	429
AfaI	GTAC	2 cut(s)	341, 388
AfiI	CCNNNNNNNGG	2 cut(s)	63, 274
AgsI	TTSAA	7 cut(s)	90, 131, 588, 676, 859, 864, 938
AjnI	CCWGG	2 cut(s)	568, 1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	9 cut(s)	222, 348, 679, 757, 767, 791, 848, 925, 1084
AluI	AGCT	9 cut(s)	222, 348, 679, 757, 767, 791, 848, 925, 1084
Alw21I	GWGCWC	2 cut(s)	224, 830
Alw26I	GTCTC	2 cut(s)	190, 257
Alw44I	GTGCAC	1 cut(s)	826
AlwI	GGATC	8 cut(s)	560, 567, 580, 611, 615, 620, 728, 741
Ama87I	CYCGRG	1 cut(s)	1179
ApaLI	GTGCAC	1 cut(s)	826
ApeKI	GCWGC	2 cut(s)	4, 668
ApoI	RAATTY	1 cut(s)	429
AseI	ATTAAT	1 cut(s)	839
Asp700I	GAANNNNTTC	1 cut(s)	1188
AsuC2I	CCSGG	3 cut(s)	870, 1180, 1181
AsuHPI	GGTGA	3 cut(s)	90, 995, 1127
AvaI	CYCGRG	1 cut(s)	1179
BaeGI	GKGCMC	1 cut(s)	830
BamHI	GGATCC	2 cut(s)	572, 733
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	224, 830
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	4 cut(s)	158, 250, 841, 1106
BciT130I	CCWGG	2 cut(s)	570, 1011
BcnI	CCSGG	3 cut(s)	870, 1180, 1181
BcoDI	GTCTC	2 cut(s)	190, 257
BfaI	CTAG	1 cut(s)	1050
BfmI	CTRYAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	940
BisI	GCNGC	2 cut(s)	5, 669
BlpI	GCTNAGC	1 cut(s)	787
BlsI	GCNGC	2 cut(s)	6, 670
Bme1390I	CCNGG	5 cut(s)	570, 870, 1011, 1180, 1181
BmeT110I	CYCGRG	1 cut(s)	1179
BmiI	GGNNCC	2 cut(s)	574, 735
BmrFI	CCNGG	5 cut(s)	570, 870, 1011, 1180, 1181
BmrI	ACTGGG	1 cut(s)	739
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	739
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	787
BpuEI	CTTGAG	4 cut(s)	239, 278, 489, 1100
BpuMI	CCSGG	3 cut(s)	870, 1180, 1181
BsaJI	CCNNGG	4 cut(s)	301, 868, 1009, 1179
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 274
Bse1I	ACTGG	5 cut(s)	384, 734, 886, 1032, 1067
BseBI	CCWGG	2 cut(s)	570, 1011
BseDI	CCNNGG	4 cut(s)	301, 868, 1009, 1179
BseGI	GGATG	2 cut(s)	428, 529
BseLI	CCNNNNNNNGG	2 cut(s)	63, 274
BseMII	CTCAG	3 cut(s)	218, 617, 1155
BseNI	ACTGG	5 cut(s)	384, 734, 886, 1032, 1067
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	1 cut(s)	680
BsgI	GTGCAG	2 cut(s)	900, 979
BsiHKAI	GWGCWC	2 cut(s)	224, 830
BsiHKCI	CYCGRG	1 cut(s)	1179
BsiSI	CCGG	3 cut(s)	870, 900, 1180
BslI	CCNNNNNNNGG	2 cut(s)	63, 274
BsmAI	GTCTC	2 cut(s)	190, 257
BsmI	GAATGC	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	1179
Bsp1286I	GDGCHC	2 cut(s)	224, 830
Bsp143I	GATC	8 cut(s)	487, 565, 572, 607, 616, 625, 733, 940
Bsp1720I	GCTNAGC	1 cut(s)	787
BspACI	CCGC	3 cut(s)	7, 34, 268
BspCNI	CTCAG	3 cut(s)	217, 616, 1156
BspLI	GGNNCC	2 cut(s)	574, 735
BspPI	GGATC	8 cut(s)	560, 567, 580, 611, 615, 620, 728, 741
BspQI	GCTCTTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	270
BsrI	ACTGG	5 cut(s)	384, 734, 886, 1032, 1067
BssECI	CCNNGG	4 cut(s)	301, 868, 1009, 1179
BssMI	GATC	8 cut(s)	487, 565, 572, 607, 616, 625, 733, 940
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	570, 1011
Bst4CI	ACNGT	2 cut(s)	780, 971
Bst6I	CTCTTC	4 cut(s)	126, 151, 212, 913
BstC8I	GCNNGC	5 cut(s)	268, 272, 276, 759, 850
BstDEI	CTNAG	5 cut(s)	152, 204, 603, 787, 1164
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	428, 529
BstKTI	GATC	8 cut(s)	490, 568, 575, 610, 619, 628, 736, 943
BstMAI	GTCTC	2 cut(s)	190, 257
BstMBI	GATC	8 cut(s)	487, 565, 572, 607, 616, 625, 733, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	1020
BstNI	CCWGG	2 cut(s)	570, 1011
BstSCI	CCNGG	5 cut(s)	568, 868, 1009, 1178, 1179
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	830
BstV1I	GCAGC	1 cut(s)	680
BstX2I	RGATCY	5 cut(s)	565, 572, 616, 733, 940
BstYI	RGATCY	5 cut(s)	565, 572, 616, 733, 940
BtsCI	GGATG	2 cut(s)	428, 529
BtsI	GCAGTG	2 cut(s)	379, 967
BtsIMutI	CAGTG	3 cut(s)	379, 967, 1025
Cac8I	GCNNGC	5 cut(s)	268, 272, 276, 759, 850
Cfr9I	CCCGGG	1 cut(s)	1179
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	2 cut(s)	340, 387
CviAII	CATG	1 cut(s)	448
CviQI	GTAC	2 cut(s)	340, 387
DdeI	CTNAG	5 cut(s)	152, 204, 603, 787, 1164
DpnI	GATC	8 cut(s)	489, 567, 574, 609, 618, 627, 735, 942
DpnII	GATC	8 cut(s)	487, 565, 572, 607, 616, 625, 733, 940
DraI	TTTAAA	1 cut(s)	799
Eam1104I	CTCTTC	4 cut(s)	126, 151, 212, 913
EarI	CTCTTC	4 cut(s)	126, 151, 212, 913
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	1176
Eco53kI	GAGCTC	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	1179
EcoICRI	GAGCTC	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	568, 1009
EcoRV	GATATC	1 cut(s)	1176
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	451
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	1 cut(s)	447
FauI	CCCGC	2 cut(s)	41, 275
FblI	GTMKAC	2 cut(s)	309, 966
Fnu4HI	GCNGC	2 cut(s)	5, 669
FokI	GGATG	2 cut(s)	435, 536
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	5, 669
FspBI	CTAG	1 cut(s)	1050
GluI	GCNGC	2 cut(s)	5, 669
HapII	CCGG	3 cut(s)	870, 900, 1180
HgaI	GACGC	1 cut(s)	557
Hin1II	CATG	1 cut(s)	451
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	3 cut(s)	677, 755, 923
HinfI	GANTC	2 cut(s)	306, 1097
HpaII	CCGG	3 cut(s)	870, 900, 1180
HphI	GGTGA	3 cut(s)	90, 995, 1127
Hpy166II	GTNNAC	6 cut(s)	310, 496, 828, 883, 967, 986
Hpy188I	TCNGA	5 cut(s)	75, 399, 638, 814, 1105
Hpy188III	TCNNGA	6 cut(s)	295, 506, 521, 605, 737, 1088
Hpy8I	GTNNAC	6 cut(s)	310, 496, 828, 883, 967, 986
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	58, 699
HpyCH4III	ACNGT	2 cut(s)	780, 971
HpyCH4IV	ACGT	3 cut(s)	516, 646, 750
HpyCH4V	TGCA	5 cut(s)	557, 761, 828, 917, 960
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1020
HpyF3I	CTNAG	5 cut(s)	152, 204, 603, 787, 1164
HpySE526I	ACGT	3 cut(s)	516, 646, 750
Hsp92II	CATG	1 cut(s)	451
Kzo9I	GATC	8 cut(s)	487, 565, 572, 607, 616, 625, 733, 940
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	1050
MaeII	ACGT	3 cut(s)	516, 646, 750
MaeIII	GTNAC	3 cut(s)	416, 780, 1052
MalI	GATC	8 cut(s)	489, 567, 574, 609, 618, 627, 735, 942
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	8 cut(s)	487, 565, 572, 607, 616, 625, 733, 940
MboII	GAAGA	7 cut(s)	43, 138, 143, 229, 237, 900, 950
MfeI	CAATTG	1 cut(s)	1155
MflI	RGATCY	5 cut(s)	565, 572, 616, 733, 940
MhlI	GDGCHC	2 cut(s)	224, 830
MluCI	AATT	6 cut(s)	279, 429, 840, 859, 1000, 1155
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	4 cut(s)	460, 502, 1109, 1111
MroXI	GAANNNNTTC	1 cut(s)	1188
MseI	TTAA	6 cut(s)	59, 681, 753, 798, 839, 1131
MspI	CCGG	3 cut(s)	870, 900, 1180
MspR9I	CCNGG	5 cut(s)	570, 870, 1011, 1180, 1181
MunI	CAATTG	1 cut(s)	1155
Mva1269I	GAATGC	1 cut(s)	671
MvaI	CCWGG	2 cut(s)	570, 1011
MwoI	GCNNNNNNNGC	1 cut(s)	1020
NciI	CCSGG	3 cut(s)	870, 1180, 1181
NdeII	GATC	8 cut(s)	487, 565, 572, 607, 616, 625, 733, 940
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	2 cut(s)	574, 735
NmuCI	GTSAC	3 cut(s)	416, 780, 1052
PciSI	GCTCTTC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	790
PctI	GAATGC	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	1188
PfeI	GAWTC	1 cut(s)	1097
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	2 cut(s)	6, 670
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	839
PsiI	TTATAA	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	224
Psp1406I	AACGTT	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	568, 1009
PspGI	CCWGG	2 cut(s)	568, 1009
PspN4I	GGNNCC	2 cut(s)	574, 735
PsuI	RGATCY	5 cut(s)	565, 572, 616, 733, 940
RsaI	GTAC	2 cut(s)	341, 388
RsaNI	GTAC	2 cut(s)	340, 387
SacI	GAGCTC	1 cut(s)	224
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	6 cut(s)	59, 681, 753, 798, 839, 1131
SatI	GCNGC	2 cut(s)	5, 669
Sau3AI	GATC	8 cut(s)	487, 565, 572, 607, 616, 625, 733, 940
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	5 cut(s)	570, 870, 1011, 1180, 1181
SduI	GDGCHC	2 cut(s)	224, 830
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	323
SmaI	CCCGGG	1 cut(s)	1181
SmlI	CTYRAG	4 cut(s)	254, 293, 504, 1079
SmoI	CTYRAG	4 cut(s)	254, 293, 504, 1079
Sse9I	AATT	6 cut(s)	279, 429, 840, 859, 1000, 1155
SsiI	CCGC	3 cut(s)	7, 34, 268
SspMI	CTAG	1 cut(s)	1050
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	5 cut(s)	568, 868, 1009, 1178, 1179
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	780, 971
TaiI	ACGT	3 cut(s)	519, 649, 753
TaqI	TCGA	2 cut(s)	309, 793
TasI	AATT	6 cut(s)	279, 429, 840, 859, 1000, 1155
TfiI	GAWTC	1 cut(s)	1097
Tru1I	TTAA	6 cut(s)	59, 681, 753, 798, 839, 1131
Tru9I	TTAA	6 cut(s)	59, 681, 753, 798, 839, 1131
TscAI	CASTG	3 cut(s)	379, 967, 1032
TseFI	GTSAC	3 cut(s)	416, 780, 1052
TseI	GCWGC	2 cut(s)	4, 668
Tsp45I	GTSAC	3 cut(s)	416, 780, 1052
TspDTI	ATGAA	1 cut(s)	900
TspGWI	ACGGA	1 cut(s)	435
TspMI	CCCGGG	1 cut(s)	1179
TspRI	CASTG	3 cut(s)	379, 967, 1032
VneI	GTGCAC	1 cut(s)	826
VspI	ATTAAT	1 cut(s)	839
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1154
XmaI	CCCGGG	1 cut(s)	1179
XmiI	GTMKAC	2 cut(s)	309, 966
XmnI	GAANNNNTTC	1 cut(s)	1188
XspI	CTAG	1 cut(s)	1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.