Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

15810611 .. 15816971

Gene Structure 6361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24460.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTTGCGGACGACTATTGCTGTTGTTCCTCTCCTACCCATTCTTCCCCATTGCTCCTTCAGCAGGACTGTTTCGACCAAAATGAGCTCAACACAATCACCCATCAAACTCCCAAGATTTGTTTCTGTCGAAGACAGTGGCATCTCTTCACTGACCAAGCCTGATGATGGTATCAAGTTTAGTCTTGTGTCTTATAACATTTTGGCTCAGGCGTATGTGAAGAGCTCCTTGTTTCCACACTCTCCACCTTCTCATCTCAAGTGGAAAGCCCGCTCGCAGGCAATTTTGACTGTTCTCAAGAACCTTGGAGCCGACTTTCTATGCCTACAGGAAGTTGATGAGTACAACAGCTTTTACAAAGGAAATATGGAGAGAAATGGTTATTCTAGTACTTACATTCAGAGAAGTGGGCAAAAGCGTGACGGATGTGGAATATTTTACAAGCATCACATAGCGGAGTTGGTGTTGGAGGAAATTATAGATTACAATGATCTTGTAGACTCAATTCAAGAGGGAAAAGTTCTGGGTGTTGATATACAATATGACAAGGAAGCTACTGCAAACAAAGATCCTGGATCCAAAAATGGTTCAAAATCAACAGGCACTCAGGATCGTGGAGATCCCAATGATCCCCGTGTCAGACTAAAACGTGATTGTGTAGGACTTATAGCAGCATTCAAGCTTAAAAATCCTTCACAAAATGTTGTTATAGTGGCAAACACACATATTTACTGGGATCCAGACTGGGCAGATGTTAAGCTAGCACAAGCTAAATATCTGCTATCACGCTTGGCTCGTTTTAAAAAGTTGGTATCAGATAAGTTTGACTGCGCCCCATCCTTAATTTTAGCTGGTGACTTCAATTCAACTCCAGGCGATAAGGTTTACCAGCATCTTACTTCTGGCAACTCTTCATCTCCACCAGCGTTTGATGCTCTTGAAGATCTGCCTATCCCTTTGTGCAGTGTCTACGCTTCTACAAGGGGTGAACCACCTTTCACGAATTACACCCCTGGCTTCACAGGCACACTGGATTATATATTCTTTTCCCCAAGTGCCCACATACAGCCAGTCAGTTTCCTTGAGCTTCCAGAACCAGAATCCTCTGATATTAATGGAGGATTGCCAAACTTTAATCACCCAAGCGACCATTTACCAATTGGTGCTGAGTTTGTGATATCCCAGGAACAAATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

400

Amino Acids

44.05

Weight (kDa)

6.07

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	63 - 293	1.5e-14	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	498, 969
AciI	CCGC	3 cut(s)	7, 271, 455
AclWI	GGATC	8 cut(s)	563, 570, 583, 614, 618, 623, 731, 744
AcsI	RAATTY	1 cut(s)	1191
AcuI	CTGAAG	1 cut(s)	43
AfaI	GTAC	2 cut(s)	344, 391
AfiI	CCNNNNNNNGG	3 cut(s)	63, 167, 277
AgsI	TTSAA	6 cut(s)	509, 591, 679, 862, 867, 941
AjnI	CCWGG	4 cut(s)	571, 871, 1012, 1182
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	9 cut(s)	87, 225, 351, 554, 682, 760, 770, 851, 1087
AluI	AGCT	9 cut(s)	87, 225, 351, 554, 682, 760, 770, 851, 1087
Alw21I	GWGCWC	2 cut(s)	89, 227
AlwI	GGATC	8 cut(s)	563, 570, 583, 614, 618, 623, 731, 744
ApeKI	GCWGC	1 cut(s)	671
ApoI	RAATTY	1 cut(s)	1191
AseI	ATTAAT	1 cut(s)	1113
Asp700I	GAANNNNTTC	1 cut(s)	1191
AspLEI	GCGC	1 cut(s)	833
AsuHPI	GGTGA	4 cut(s)	90, 866, 998, 1130
AsuNHI	GCTAGC	1 cut(s)	760
BaeGI	GKGCMC	1 cut(s)	1060
BamHI	GGATCC	2 cut(s)	575, 736
BanII	GRGCYC	2 cut(s)	89, 227
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	89, 227
BbvI	GCAGC	1 cut(s)	683
BccI	CCATC	3 cut(s)	110, 161, 844
BciT130I	CCWGG	4 cut(s)	573, 873, 1014, 1184
BfaI	CTAG	2 cut(s)	387, 761
BfmI	CTRYAG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	1 cut(s)	672
BlsI	GCNGC	1 cut(s)	673
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	4 cut(s)	573, 873, 1014, 1184
BmiI	GGNNCC	3 cut(s)	310, 577, 738
BmrFI	CCNGG	4 cut(s)	573, 873, 1014, 1184
BmrI	ACTGGG	2 cut(s)	742, 754
BmsI	GCATC	4 cut(s)	150, 454, 901, 922
BmtI	GCTAGC	1 cut(s)	764
BmuI	ACTGGG	2 cut(s)	742, 754
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	855
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	3 cut(s)	242, 281, 1103
BsaJI	CCNNGG	3 cut(s)	304, 1012, 1182
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 167, 277
Bse1I	ACTGG	4 cut(s)	737, 749, 1035, 1070
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	4 cut(s)	573, 873, 1014, 1184
BseDI	CCNNGG	3 cut(s)	304, 1012, 1182
BseGI	GGATG	2 cut(s)	431, 836
BseLI	CCNNNNNNNGG	3 cut(s)	63, 167, 277
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	3 cut(s)	221, 620, 1158
BseNI	ACTGG	4 cut(s)	737, 749, 1035, 1070
BseSI	GKGCMC	1 cut(s)	1060
BseXI	GCAGC	1 cut(s)	683
BsgI	GTGCAG	1 cut(s)	982
BsiHKAI	GWGCWC	2 cut(s)	89, 227
BslI	CCNNNNNNNGG	3 cut(s)	63, 167, 277
BsmI	GAATGC	1 cut(s)	674
Bsp1286I	GDGCHC	3 cut(s)	89, 227, 1060
Bsp143I	GATC	8 cut(s)	490, 568, 575, 610, 619, 628, 736, 943
BspACI	CCGC	3 cut(s)	7, 271, 455
BspCNI	CTCAG	3 cut(s)	220, 619, 1159
BspLI	GGNNCC	3 cut(s)	310, 577, 738
BspOI	GCTAGC	1 cut(s)	764
BspPI	GGATC	8 cut(s)	563, 570, 583, 614, 618, 623, 731, 744
BspQI	GCTCTTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	4 cut(s)	737, 749, 1035, 1070
BssECI	CCNNGG	3 cut(s)	304, 1012, 1182
BssMI	GATC	8 cut(s)	490, 568, 575, 610, 619, 628, 736, 943
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	4 cut(s)	573, 873, 1014, 1184
Bst4CI	ACNGT	3 cut(s)	70, 137, 292
Bst6I	CTCTTC	3 cut(s)	151, 215, 916
BstC8I	GCNNGC	4 cut(s)	271, 275, 279, 762
BstDEI	CTNAG	3 cut(s)	207, 606, 1167
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	431, 836
BstHHI	GCGC	1 cut(s)	833
BstKTI	GATC	8 cut(s)	493, 571, 578, 613, 622, 631, 739, 946
BstMBI	GATC	8 cut(s)	490, 568, 575, 610, 619, 628, 736, 943
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 932, 1023
BstNI	CCWGG	4 cut(s)	573, 873, 1014, 1184
BstSCI	CCNGG	4 cut(s)	571, 871, 1012, 1182
BstSFI	CTRYAG	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	1060
BstV1I	GCAGC	1 cut(s)	683
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	5 cut(s)	568, 575, 619, 736, 943
BstYI	RGATCY	5 cut(s)	568, 575, 619, 736, 943
BtsCI	GGATG	2 cut(s)	431, 836
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	4 cut(s)	142, 149, 970, 1028
Cac8I	GCNNGC	4 cut(s)	271, 275, 279, 762
CfoI	GCGC	1 cut(s)	833
Csp6I	GTAC	2 cut(s)	343, 390
CviQI	GTAC	2 cut(s)	343, 390
DdeI	CTNAG	3 cut(s)	207, 606, 1167
DpnI	GATC	8 cut(s)	492, 570, 577, 612, 621, 630, 738, 945
DpnII	GATC	8 cut(s)	490, 568, 575, 610, 619, 628, 736, 943
DraI	TTTAAA	1 cut(s)	802
Eam1104I	CTCTTC	3 cut(s)	151, 215, 916
EarI	CTCTTC	3 cut(s)	151, 215, 916
Ecl136II	GAGCTC	2 cut(s)	87, 225
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	89, 227
Eco32I	GATATC	1 cut(s)	1179
Eco53kI	GAGCTC	2 cut(s)	87, 225
Eco57I	CTGAAG	1 cut(s)	43
EcoICRI	GAGCTC	2 cut(s)	87, 225
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoRII	CCWGG	4 cut(s)	571, 871, 1012, 1182
EcoRV	GATATC	1 cut(s)	1179
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	89, 227
ErhI	CCWWGG	1 cut(s)	304
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FauI	CCCGC	1 cut(s)	278
FblI	GTMKAC	2 cut(s)	498, 969
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	2 cut(s)	438, 823
FriOI	GRGCYC	2 cut(s)	89, 227
Fsp4HI	GCNGC	1 cut(s)	672
FspBI	CTAG	2 cut(s)	387, 761
GlaI	GCGC	1 cut(s)	832
GluI	GCNGC	1 cut(s)	672
GsuI	CTGGAG	1 cut(s)	855
HhaI	GCGC	1 cut(s)	833
Hin6I	GCGC	1 cut(s)	831
HinP1I	GCGC	1 cut(s)	831
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	2 cut(s)	500, 1100
HphI	GGTGA	4 cut(s)	90, 866, 998, 1130
Hpy166II	GTNNAC	4 cut(s)	499, 886, 970, 989
Hpy188I	TCNGA	4 cut(s)	402, 641, 817, 1108
Hpy188III	TCNNGA	7 cut(s)	298, 509, 608, 740, 938, 1000, 1091
Hpy8I	GTNNAC	4 cut(s)	499, 886, 970, 989
HpyAV	CCTTC	3 cut(s)	67, 258, 702
HpyCH4III	ACNGT	3 cut(s)	70, 137, 292
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	2 cut(s)	560, 963
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 932, 1023
HpyF3I	CTNAG	3 cut(s)	207, 606, 1167
HpySE526I	ACGT	1 cut(s)	649
HspAI	GCGC	1 cut(s)	831
Kzo9I	GATC	8 cut(s)	490, 568, 575, 610, 619, 628, 736, 943
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	3 cut(s)	59, 230, 308
Lsp1109I	GCAGC	1 cut(s)	683
LweI	GCATC	4 cut(s)	150, 454, 901, 922
MaeI	CTAG	2 cut(s)	387, 761
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	2 cut(s)	419, 854
MalI	GATC	8 cut(s)	492, 570, 577, 612, 621, 630, 738, 945
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	8 cut(s)	490, 568, 575, 610, 619, 628, 736, 943
MboII	GAAGA	6 cut(s)	35, 138, 143, 232, 903, 953
MfeI	CAATTG	1 cut(s)	1158
MflI	RGATCY	5 cut(s)	568, 575, 619, 736, 943
MhlI	GDGCHC	3 cut(s)	89, 227, 1060
MluCI	AATT	8 cut(s)	282, 474, 504, 843, 862, 1003, 1158, 1191
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	5 cut(s)	39, 463, 505, 1112, 1114
MroXI	GAANNNNTTC	1 cut(s)	1191
MseI	TTAA	6 cut(s)	684, 756, 801, 842, 1113, 1134
MspR9I	CCNGG	4 cut(s)	573, 873, 1014, 1184
MunI	CAATTG	1 cut(s)	1158
Mva1269I	GAATGC	1 cut(s)	674
MvaI	CCWGG	4 cut(s)	573, 873, 1014, 1184
MwoI	GCNNNNNNNGC	3 cut(s)	60, 932, 1023
NdeII	GATC	8 cut(s)	490, 568, 575, 610, 619, 628, 736, 943
NheI	GCTAGC	1 cut(s)	760
NlaIV	GGNNCC	3 cut(s)	310, 577, 738
NmuCI	GTSAC	2 cut(s)	419, 854
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	793
PctI	GAATGC	1 cut(s)	674
PdmI	GAANNNNTTC	1 cut(s)	1191
PfeI	GAWTC	1 cut(s)	1100
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	673
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PshBI	ATTAAT	1 cut(s)	1113
PsiI	TTATAA	1 cut(s)	195
Psp124BI	GAGCTC	2 cut(s)	89, 227
Psp6I	CCWGG	4 cut(s)	571, 871, 1012, 1182
PspGI	CCWGG	4 cut(s)	571, 871, 1012, 1182
PspN4I	GGNNCC	3 cut(s)	310, 577, 738
PsuI	RGATCY	5 cut(s)	568, 575, 619, 736, 943
RsaI	GTAC	2 cut(s)	344, 391
RsaNI	GTAC	2 cut(s)	343, 390
SacI	GAGCTC	2 cut(s)	89, 227
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	6 cut(s)	684, 756, 801, 842, 1113, 1134
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	8 cut(s)	490, 568, 575, 610, 619, 628, 736, 943
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	4 cut(s)	573, 873, 1014, 1184
SduI	GDGCHC	3 cut(s)	89, 227, 1060
SfaNI	GCATC	4 cut(s)	150, 454, 901, 922
SfcI	CTRYAG	1 cut(s)	326
SmlI	CTYRAG	3 cut(s)	257, 296, 1082
SmoI	CTYRAG	3 cut(s)	257, 296, 1082
Sse9I	AATT	8 cut(s)	282, 474, 504, 843, 862, 1003, 1158, 1191
SsiI	CCGC	3 cut(s)	7, 271, 455
SspI	AATATT	1 cut(s)	435
SspMI	CTAG	2 cut(s)	387, 761
SstI	GAGCTC	2 cut(s)	89, 227
StyD4I	CCNGG	4 cut(s)	571, 871, 1012, 1182
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	3 cut(s)	70, 137, 292
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	2 cut(s)	74, 129
TasI	AATT	8 cut(s)	282, 474, 504, 843, 862, 1003, 1158, 1191
TatI	WGTACW	2 cut(s)	342, 389
TfiI	GAWTC	1 cut(s)	1100
Tru1I	TTAA	6 cut(s)	684, 756, 801, 842, 1113, 1134
Tru9I	TTAA	6 cut(s)	684, 756, 801, 842, 1113, 1134
TscAI	CASTG	4 cut(s)	142, 156, 970, 1035
TseFI	GTSAC	2 cut(s)	419, 854
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	2 cut(s)	419, 854
TspDTI	ATGAA	1 cut(s)	903
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	4 cut(s)	142, 156, 970, 1035
VspI	ATTAAT	1 cut(s)	1113
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	1191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1157
XmiI	GTMKAC	2 cut(s)	498, 969
XmnI	GAANNNNTTC	1 cut(s)	1191
XspI	CTAG	2 cut(s)	387, 761
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.