Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

25602128 .. 25607507

Gene Structure 5380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG275700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCTGCGGACGACGACTATTCCTGTGCTTCCCCGCCTACCCATTCCCTTCTTCTCCTTAACAAGGTCTGTTCCGACCAAAATGAGTTCAACCCAATCACCAATCAAACTCCCAAGATTTGTTTCTGTTGAAGAGAGTGGCATCTCTTCTCTAAGCAAACCTGATGGTATCAGGTTTAGTCTTGTGTCGTATAACATTTTGGCTCAGGCGTATGTGAAGAGCTCCTTGTTTCCCCACTCTCCATCTTCTTGTCTCAAGTGGAAAGCCCGCTCGCAGGCAATTTTGAGTGTTCTCAAGAACCTTGGAGTCGACTTTCTCTGCCTACAGGAAGTTGATGATGGGCAAAAGCGTGACGGATGTGGAATTTTTTATAAGCATAACATGGCAGAGTTGGTGTTAGAGGATATTATAGATTACAATGATCTTGTAAACTCAACTCAAGAGGGAAACGTTCTGGATGATGATAAACAATATGACAAGGACGCTATTGCAAACAAAGATCCTGGATCCAAAAATGGTTCAAAATCAAAAGGCACTCAGGATCGTGGAGATCCTAATGATCCCCGTGTCAGATTAAAACGTGATTGTGTAGGACTTATAGCAGCATTCAAGCTTAAAAATCCTTCACAAAATGTTGTTATTGTGGCAAACACACACATTTACTGGGATCCAGAGTGGGCAGACGTTAAGCTTGCACAAGCTAAATATCTACTGTCACGCTTAGCTCGATTTAAAAAGTTGGTATCAGATAAGTTTGAGTGCACCCCATCATTAATTGTAGCTGGTGACTTCAATTCAACCCCGGGCGATAAGGTTTACCAGTATCTTATTTCCGGCAACTCTTCATCTGCACCAACGCTTGATGTTGTTGAAGATCTGGCTATTCCTTTGTGCAGTGTCTACGGTTCTACAAGGGGTGAACCACCTTTTACGAATTACACCCCTGGCTTCACAGGCACACTGGATTATGTATTCTTTTCCCCTAGTGACAACATACAACCAGTCAGTTTCCTTGAGCTTCCAGAACCAGAATCCTCTGATATTGATGGAGGATTACCAAACTTTAATCACCCAAGCGACCATTTACCAATTGGTGCTGAGTTTGTGATATCCCGGGAATATATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

376

Amino Acids

41.53

Weight (kDa)

5.5

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	63 - 361	1.6e-16	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccBSI	CCGCTC	1 cut(s)	270
AccI	GTMKAC	2 cut(s)	309, 900
AciI	CCGC	3 cut(s)	7, 34, 268
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	8 cut(s)	494, 501, 514, 545, 549, 554, 662, 675
AcsI	RAATTY	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	63, 274
AgsI	TTSAA	7 cut(s)	90, 131, 522, 610, 793, 798, 872
AjnI	CCWGG	2 cut(s)	502, 943
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	7 cut(s)	222, 613, 691, 701, 725, 782, 1018
AluI	AGCT	7 cut(s)	222, 613, 691, 701, 725, 782, 1018
Alw21I	GWGCWC	2 cut(s)	224, 764
Alw26I	GTCTC	1 cut(s)	257
Alw44I	GTGCAC	1 cut(s)	760
AlwI	GGATC	8 cut(s)	494, 501, 514, 545, 549, 554, 662, 675
Ama87I	CYCGRG	2 cut(s)	802, 1113
ApaLI	GTGCAC	1 cut(s)	760
ApeKI	GCWGC	2 cut(s)	4, 602
ApoI	RAATTY	1 cut(s)	363
AseI	ATTAAT	1 cut(s)	773
Asp700I	GAANNNNTTC	1 cut(s)	1122
AsuC2I	CCSGG	4 cut(s)	803, 804, 1114, 1115
AsuHPI	GGTGA	4 cut(s)	90, 797, 929, 1061
AvaI	CYCGRG	2 cut(s)	802, 1113
BaeGI	GKGCMC	1 cut(s)	764
BamHI	GGATCC	2 cut(s)	506, 667
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	224, 764
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	5 cut(s)	158, 250, 332, 775, 1040
BciT130I	CCWGG	2 cut(s)	504, 945
BcnI	CCSGG	4 cut(s)	803, 804, 1114, 1115
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	984
BfmI	CTRYAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	874
BisI	GCNGC	2 cut(s)	5, 603
BlpI	GCTNAGC	1 cut(s)	721
BlsI	GCNGC	2 cut(s)	6, 604
Bme1390I	CCNGG	6 cut(s)	504, 803, 804, 945, 1114, 1115
BmeT110I	CYCGRG	2 cut(s)	802, 1113
BmiI	GGNNCC	2 cut(s)	508, 669
BmrFI	CCNGG	6 cut(s)	504, 803, 804, 945, 1114, 1115
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	673
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	721
BpuEI	CTTGAG	4 cut(s)	239, 278, 423, 1034
BpuMI	CCSGG	4 cut(s)	803, 804, 1114, 1115
BsaJI	CCNNGG	5 cut(s)	301, 801, 802, 943, 1113
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 274
Bse1I	ACTGG	4 cut(s)	668, 820, 966, 1001
BseBI	CCWGG	2 cut(s)	504, 945
BseDI	CCNNGG	5 cut(s)	301, 801, 802, 943, 1113
BseGI	GGATG	2 cut(s)	362, 463
BseLI	CCNNNNNNNGG	2 cut(s)	63, 274
BseMII	CTCAG	3 cut(s)	218, 551, 1089
BseNI	ACTGG	4 cut(s)	668, 820, 966, 1001
BseSI	GKGCMC	1 cut(s)	764
BseXI	GCAGC	1 cut(s)	614
BsgI	GTGCAG	2 cut(s)	834, 913
BsiHKAI	GWGCWC	2 cut(s)	224, 764
BsiHKCI	CYCGRG	2 cut(s)	802, 1113
BsiSI	CCGG	3 cut(s)	803, 834, 1114
BslI	CCNNNNNNNGG	2 cut(s)	63, 274
BsmAI	GTCTC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	605
BsoBI	CYCGRG	2 cut(s)	802, 1113
Bsp1286I	GDGCHC	2 cut(s)	224, 764
Bsp143I	GATC	8 cut(s)	421, 499, 506, 541, 550, 559, 667, 874
Bsp1720I	GCTNAGC	1 cut(s)	721
BspACI	CCGC	3 cut(s)	7, 34, 268
BspCNI	CTCAG	3 cut(s)	217, 550, 1090
BspLI	GGNNCC	2 cut(s)	508, 669
BspPI	GGATC	8 cut(s)	494, 501, 514, 545, 549, 554, 662, 675
BspQI	GCTCTTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	270
BsrI	ACTGG	4 cut(s)	668, 820, 966, 1001
BssECI	CCNNGG	5 cut(s)	301, 801, 802, 943, 1113
BssMI	GATC	8 cut(s)	421, 499, 506, 541, 550, 559, 667, 874
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	504, 945
Bst4CI	ACNGT	2 cut(s)	714, 905
Bst6I	CTCTTC	4 cut(s)	126, 151, 212, 847
BstC8I	GCNNGC	4 cut(s)	268, 272, 276, 693
BstDEI	CTNAG	5 cut(s)	152, 204, 537, 721, 1098
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	362, 463
BstKTI	GATC	8 cut(s)	424, 502, 509, 544, 553, 562, 670, 877
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	8 cut(s)	421, 499, 506, 541, 550, 559, 667, 874
BstMWI	GCNNNNNNNGC	1 cut(s)	954
BstNI	CCWGG	2 cut(s)	504, 945
BstSCI	CCNGG	6 cut(s)	502, 801, 802, 943, 1112, 1113
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	764
BstV1I	GCAGC	1 cut(s)	614
BstX2I	RGATCY	5 cut(s)	499, 506, 550, 667, 874
BstYI	RGATCY	5 cut(s)	499, 506, 550, 667, 874
BtsCI	GGATG	2 cut(s)	362, 463
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	2 cut(s)	901, 959
Cac8I	GCNNGC	4 cut(s)	268, 272, 276, 693
Cfr9I	CCCGGG	2 cut(s)	802, 1113
CseI	GACGC	1 cut(s)	491
CviAII	CATG	1 cut(s)	382
DdeI	CTNAG	5 cut(s)	152, 204, 537, 721, 1098
DpnI	GATC	8 cut(s)	423, 501, 508, 543, 552, 561, 669, 876
DpnII	GATC	8 cut(s)	421, 499, 506, 541, 550, 559, 667, 874
DraI	TTTAAA	1 cut(s)	733
Eam1104I	CTCTTC	4 cut(s)	126, 151, 212, 847
EarI	CTCTTC	4 cut(s)	126, 151, 212, 847
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	1110
Eco53kI	GAGCTC	1 cut(s)	222
Eco88I	CYCGRG	2 cut(s)	802, 1113
EcoICRI	GAGCTC	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	502, 943
EcoRV	GATATC	1 cut(s)	1110
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	385
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	1 cut(s)	381
FauI	CCCGC	2 cut(s)	41, 275
FblI	GTMKAC	2 cut(s)	309, 900
Fnu4HI	GCNGC	2 cut(s)	5, 603
FokI	GGATG	2 cut(s)	369, 470
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	5, 603
FspBI	CTAG	1 cut(s)	984
GluI	GCNGC	2 cut(s)	5, 603
HapII	CCGG	3 cut(s)	803, 834, 1114
HgaI	GACGC	1 cut(s)	491
Hin1II	CATG	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	611, 689
HinfI	GANTC	2 cut(s)	306, 1031
HpaII	CCGG	3 cut(s)	803, 834, 1114
HphI	GGTGA	4 cut(s)	90, 797, 929, 1061
Hpy166II	GTNNAC	6 cut(s)	310, 430, 762, 817, 901, 920
Hpy188I	TCNGA	4 cut(s)	75, 572, 748, 1039
Hpy188III	TCNNGA	6 cut(s)	295, 440, 455, 539, 671, 1022
Hpy8I	GTNNAC	6 cut(s)	310, 430, 762, 817, 901, 920
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	58, 633
HpyCH4III	ACNGT	2 cut(s)	714, 905
HpyCH4IV	ACGT	3 cut(s)	450, 580, 684
HpyCH4V	TGCA	5 cut(s)	491, 695, 762, 851, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	954
HpyF3I	CTNAG	5 cut(s)	152, 204, 537, 721, 1098
HpySE526I	ACGT	3 cut(s)	450, 580, 684
Hsp92II	CATG	1 cut(s)	385
Kzo9I	GATC	8 cut(s)	421, 499, 506, 541, 550, 559, 667, 874
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	984
MaeII	ACGT	3 cut(s)	450, 580, 684
MaeIII	GTNAC	4 cut(s)	350, 714, 785, 986
MalI	GATC	8 cut(s)	423, 501, 508, 543, 552, 561, 669, 876
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	8 cut(s)	421, 499, 506, 541, 550, 559, 667, 874
MboII	GAAGA	7 cut(s)	43, 138, 143, 229, 237, 834, 884
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	5 cut(s)	499, 506, 550, 667, 874
MhlI	GDGCHC	2 cut(s)	224, 764
MluCI	AATT	6 cut(s)	279, 363, 774, 793, 934, 1089
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	4 cut(s)	394, 436, 1043, 1045
MroXI	GAANNNNTTC	1 cut(s)	1122
MseI	TTAA	7 cut(s)	59, 575, 615, 687, 732, 773, 1065
MspI	CCGG	3 cut(s)	803, 834, 1114
MspR9I	CCNGG	6 cut(s)	504, 803, 804, 945, 1114, 1115
MunI	CAATTG	1 cut(s)	1089
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	2 cut(s)	504, 945
MwoI	GCNNNNNNNGC	1 cut(s)	954
NciI	CCSGG	4 cut(s)	803, 804, 1114, 1115
NdeII	GATC	8 cut(s)	421, 499, 506, 541, 550, 559, 667, 874
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	508, 669
NmuCI	GTSAC	4 cut(s)	350, 714, 785, 986
PciSI	GCTCTTC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	724
PctI	GAATGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	1122
PfeI	GAWTC	1 cut(s)	1031
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	6, 604
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	773
PsiI	TTATAA	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	224
Psp1406I	AACGTT	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	502, 943
PspGI	CCWGG	2 cut(s)	502, 943
PspN4I	GGNNCC	2 cut(s)	508, 669
PsuI	RGATCY	5 cut(s)	499, 506, 550, 667, 874
SacI	GAGCTC	1 cut(s)	224
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	7 cut(s)	59, 575, 615, 687, 732, 773, 1065
SatI	GCNGC	2 cut(s)	5, 603
Sau3AI	GATC	8 cut(s)	421, 499, 506, 541, 550, 559, 667, 874
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	6 cut(s)	504, 803, 804, 945, 1114, 1115
SduI	GDGCHC	2 cut(s)	224, 764
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	323
SmaI	CCCGGG	2 cut(s)	804, 1115
SmlI	CTYRAG	4 cut(s)	254, 293, 438, 1013
SmoI	CTYRAG	4 cut(s)	254, 293, 438, 1013
Sse9I	AATT	6 cut(s)	279, 363, 774, 793, 934, 1089
SsiI	CCGC	3 cut(s)	7, 34, 268
SspMI	CTAG	1 cut(s)	984
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	6 cut(s)	502, 801, 802, 943, 1112, 1113
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	714, 905
TaiI	ACGT	3 cut(s)	453, 583, 687
TaqI	TCGA	2 cut(s)	309, 727
TasI	AATT	6 cut(s)	279, 363, 774, 793, 934, 1089
TfiI	GAWTC	1 cut(s)	1031
Tru1I	TTAA	7 cut(s)	59, 575, 615, 687, 732, 773, 1065
Tru9I	TTAA	7 cut(s)	59, 575, 615, 687, 732, 773, 1065
TscAI	CASTG	2 cut(s)	901, 966
TseFI	GTSAC	4 cut(s)	350, 714, 785, 986
TseI	GCWGC	2 cut(s)	4, 602
Tsp45I	GTSAC	4 cut(s)	350, 714, 785, 986
TspDTI	ATGAA	1 cut(s)	834
TspGWI	ACGGA	1 cut(s)	369
TspMI	CCCGGG	2 cut(s)	802, 1113
TspRI	CASTG	2 cut(s)	901, 966
VneI	GTGCAC	1 cut(s)	760
VspI	ATTAAT	1 cut(s)	773
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1088
XmaI	CCCGGG	2 cut(s)	802, 1113
XmiI	GTMKAC	2 cut(s)	309, 900
XmnI	GAANNNNTTC	1 cut(s)	1122
XspI	CTAG	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.