Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

31792249 .. 31797592

Gene Structure 5344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG304000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCTGCGGAGGACGACTATTCCTGTGCTTCCCCGCCTACCCATTCCCTTCTTCTCCTTAACAAGGTCTGTTCCGACCAAAATGAGCTCAACCCAATCACCAATCAAACCCCCGAGATTTGTTTCTGTTCAAGAGAGTGGCATCTCTTCTCTAACCAAACCTGATGGTTCAAAATCAAAAAGCACTCAGGATCGTGGAGATCCTAATGATCCCTGTGTCAGACTAAAACGTGATTGTGTAGGACTTATAGCAGCATTCAAGCTTAAAAATCCTTCACAAAATGTTGTTATTGTGGCAAACACACACATTTACTGGGATCCAGAGTGGGCAGACGTTAAGCTTGCACAAGCTAAATATCTACTGTCACGCTTAGCTCGATTTAAAAAGTTGGTATCAGATAAGTTTGAGTGCACCCCATCATTAATTGTAGCTGGCGACTTCAATTCAACCCCAGGCGATAAGGTTTATCAGTATCTTATTTCCGGCAACTCTTCATCTGCACCAACTCTTGATGTTGTTGAAGATCTGCCTATTCCTTTGTGCAGTGTCTACGGTTCTACAAGGGGTGAACCACCTTTTACGAATTACACCCCTGGCTTCACAGGCACACTGGATTATATATTCTTTTCCCCTAGTGACAACATACAACCAGTCAGTTTCCTTGAGCTTCCAGAACCAGAATCCTCTGATATTGTTGGAGGATTACCAAACTTTAATCACCCAAGCGACCATTTACCAATTGGTGCTGAGTTTGTGATATCCCGGGAATATATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

259

Amino Acids

28.53

Weight (kDa)

6.83

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	109 - 244	1.1e-09	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	2 cut(s)	7, 34
AclWI	GGATC	5 cut(s)	194, 198, 203, 311, 324
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	6 cut(s)	131, 171, 259, 442, 447, 521
AjnI	CCWGG	2 cut(s)	451, 592
AluBI	AGCT	7 cut(s)	87, 262, 340, 350, 374, 431, 667
AluI	AGCT	7 cut(s)	87, 262, 340, 350, 374, 431, 667
Alw21I	GWGCWC	2 cut(s)	89, 413
Alw44I	GTGCAC	1 cut(s)	409
AlwI	GGATC	5 cut(s)	194, 198, 203, 311, 324
Ama87I	CYCGRG	2 cut(s)	112, 762
ApaLI	GTGCAC	1 cut(s)	409
ApeKI	GCWGC	2 cut(s)	4, 251
AseI	ATTAAT	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	771
AsuC2I	CCSGG	2 cut(s)	763, 764
AsuHPI	GGTGA	3 cut(s)	90, 578, 710
AvaI	CYCGRG	2 cut(s)	112, 762
BaeGI	GKGCMC	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	89, 413
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	158, 424
BciT130I	CCWGG	2 cut(s)	453, 594
BcnI	CCSGG	2 cut(s)	763, 764
BfaI	CTAG	1 cut(s)	633
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	2 cut(s)	5, 252
BlpI	GCTNAGC	1 cut(s)	370
BlsI	GCNGC	2 cut(s)	6, 253
Bme1390I	CCNGG	4 cut(s)	453, 594, 763, 764
BmeT110I	CYCGRG	2 cut(s)	112, 762
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	4 cut(s)	453, 594, 763, 764
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	2 cut(s)	763, 764
BsaJI	CCNNGG	3 cut(s)	451, 592, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	3 cut(s)	317, 615, 650
BseBI	CCWGG	2 cut(s)	453, 594
BseDI	CCNNGG	3 cut(s)	451, 592, 762
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	200, 738
BseNI	ACTGG	3 cut(s)	317, 615, 650
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	263
BsgI	GTGCAG	2 cut(s)	483, 562
BsiHKAI	GWGCWC	2 cut(s)	89, 413
BsiHKCI	CYCGRG	2 cut(s)	112, 762
BsiSI	CCGG	2 cut(s)	483, 763
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	254
BsoBI	CYCGRG	2 cut(s)	112, 762
Bsp1286I	GDGCHC	2 cut(s)	89, 413
Bsp143I	GATC	5 cut(s)	190, 199, 208, 316, 523
Bsp1720I	GCTNAGC	1 cut(s)	370
BspACI	CCGC	2 cut(s)	7, 34
BspCNI	CTCAG	2 cut(s)	199, 739
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	5 cut(s)	194, 198, 203, 311, 324
BsrI	ACTGG	3 cut(s)	317, 615, 650
BssECI	CCNNGG	3 cut(s)	451, 592, 762
BssMI	GATC	5 cut(s)	190, 199, 208, 316, 523
Bst2UI	CCWGG	2 cut(s)	453, 594
Bst4CI	ACNGT	2 cut(s)	363, 554
Bst6I	CTCTTC	2 cut(s)	151, 496
BstC8I	GCNNGC	2 cut(s)	342, 433
BstDEI	CTNAG	3 cut(s)	186, 370, 747
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstKTI	GATC	5 cut(s)	193, 202, 211, 319, 526
BstMBI	GATC	5 cut(s)	190, 199, 208, 316, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	603
BstNI	CCWGG	2 cut(s)	453, 594
BstSCI	CCNGG	4 cut(s)	451, 592, 761, 762
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	3 cut(s)	199, 316, 523
BstYI	RGATCY	3 cut(s)	199, 316, 523
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	2 cut(s)	550, 608
Cac8I	GCNNGC	2 cut(s)	342, 433
Cfr9I	CCCGGG	1 cut(s)	762
CviJI	RGCY	8 cut(s)	87, 262, 340, 350, 374, 431, 597, 667
CviKI_1	RGCY	8 cut(s)	87, 262, 340, 350, 374, 431, 597, 667
DdeI	CTNAG	3 cut(s)	186, 370, 747
DpnI	GATC	5 cut(s)	192, 201, 210, 318, 525
DpnII	GATC	5 cut(s)	190, 199, 208, 316, 523
DraI	TTTAAA	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	151, 496
EarI	CTCTTC	2 cut(s)	151, 496
Ecl136II	GAGCTC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	759
Eco53kI	GAGCTC	1 cut(s)	87
Eco88I	CYCGRG	2 cut(s)	112, 762
EcoICRI	GAGCTC	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	451, 592
EcoRV	GATATC	1 cut(s)	759
EcoT38I	GRGCYC	1 cut(s)	89
FaiI	YATR	5 cut(s)	248, 618, 620, 644, 771
FauI	CCCGC	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	2 cut(s)	5, 252
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	5, 252
FspBI	CTAG	1 cut(s)	633
GluI	GCNGC	2 cut(s)	5, 252
HapII	CCGG	2 cut(s)	483, 763
HindIII	AAGCTT	2 cut(s)	260, 338
HinfI	GANTC	1 cut(s)	680
HpaII	CCGG	2 cut(s)	483, 763
HphI	GGTGA	3 cut(s)	90, 578, 710
Hpy166II	GTNNAC	3 cut(s)	411, 550, 569
Hpy188I	TCNGA	4 cut(s)	75, 221, 397, 688
Hpy188III	TCNNGA	5 cut(s)	131, 188, 320, 509, 671
Hpy8I	GTNNAC	3 cut(s)	411, 550, 569
HpyAV	CCTTC	2 cut(s)	58, 282
HpyCH4III	ACNGT	2 cut(s)	363, 554
HpyCH4IV	ACGT	2 cut(s)	229, 333
HpyCH4V	TGCA	4 cut(s)	344, 411, 500, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	603
HpyF3I	CTNAG	3 cut(s)	186, 370, 747
HpySE526I	ACGT	2 cut(s)	229, 333
Kzo9I	GATC	5 cut(s)	190, 199, 208, 316, 523
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	2 cut(s)	229, 333
MaeIII	GTNAC	2 cut(s)	363, 635
MalI	GATC	5 cut(s)	192, 201, 210, 318, 525
MboI	GATC	5 cut(s)	190, 199, 208, 316, 523
MboII	GAAGA	4 cut(s)	43, 138, 483, 533
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	3 cut(s)	199, 316, 523
MhlI	GDGCHC	2 cut(s)	89, 413
MluCI	AATT	4 cut(s)	423, 442, 583, 738
MmeI	TCCRAC	2 cut(s)	98, 676
MnlI	CCTC	3 cut(s)	3, 692, 694
MroXI	GAANNNNTTC	1 cut(s)	771
MseI	TTAA	6 cut(s)	59, 264, 336, 381, 422, 714
MspI	CCGG	2 cut(s)	483, 763
MspR9I	CCNGG	4 cut(s)	453, 594, 763, 764
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	2 cut(s)	453, 594
MwoI	GCNNNNNNNGC	1 cut(s)	603
NciI	CCSGG	2 cut(s)	763, 764
NdeII	GATC	5 cut(s)	190, 199, 208, 316, 523
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	2 cut(s)	363, 635
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	1 cut(s)	680
PkrI	GCNGC	2 cut(s)	6, 253
PshBI	ATTAAT	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	451, 592
PspGI	CCWGG	2 cut(s)	451, 592
PspN4I	GGNNCC	1 cut(s)	318
PsuI	RGATCY	3 cut(s)	199, 316, 523
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	6 cut(s)	59, 264, 336, 381, 422, 714
SatI	GCNGC	2 cut(s)	5, 252
Sau3AI	GATC	5 cut(s)	190, 199, 208, 316, 523
ScrFI	CCNGG	4 cut(s)	453, 594, 763, 764
SduI	GDGCHC	2 cut(s)	89, 413
SfaNI	GCATC	1 cut(s)	150
SmaI	CCCGGG	1 cut(s)	764
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	4 cut(s)	423, 442, 583, 738
SsiI	CCGC	2 cut(s)	7, 34
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	4 cut(s)	451, 592, 761, 762
TaaI	ACNGT	2 cut(s)	363, 554
TaiI	ACGT	2 cut(s)	232, 336
TaqI	TCGA	1 cut(s)	376
TasI	AATT	4 cut(s)	423, 442, 583, 738
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	6 cut(s)	59, 264, 336, 381, 422, 714
Tru9I	TTAA	6 cut(s)	59, 264, 336, 381, 422, 714
TscAI	CASTG	2 cut(s)	550, 615
TseFI	GTSAC	2 cut(s)	363, 635
TseI	GCWGC	2 cut(s)	4, 251
Tsp45I	GTSAC	2 cut(s)	363, 635
TspDTI	ATGAA	1 cut(s)	483
TspMI	CCCGGG	1 cut(s)	762
TspRI	CASTG	2 cut(s)	550, 615
VneI	GTGCAC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	737
XmaI	CCCGGG	1 cut(s)	762
XmiI	GTMKAC	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.